Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0025130 | OGI:02069930 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:26403324-26409028 | ||||||||
| Gene Symbol | OsRFPH2-15 | ||||||||||
| DNA seq | ttgcaattcggaaaagtaaggacgtgaatgaagtggataatactcgcaattcaccgcaaggcgacaacagaacaccagcaattaataactggtgaataaaaacaagagtttggatccatggaattacattgccaccccaaatcaaaatttcccaagattctatggtatacctcccccataccagaccctttacatcaccaaaaggcaaaatgaaaagaggttcatcaattagaaacatcctgacaatctaaattaccaacctacacaatcttactccttgaagcaattacaccattgctccagttctctactatttcttcccaggcccgcttcacaatgtatttaccaccaagcccccattcactttctccagtatacccccaaaaacatatttacctccaagctcacctccccatttccggtataccgccatccttgacttgaacagaagaacaaaggatgaatgctaagctactgcactattgacctactaagcaatgacaccaatgaaatttctacaccatcatctttgcacttgcttcgcaagagacaatggcaaactgccttctaccttggatggggtttctccaagagtgacctagtttgtcggagctgcggcctcgggcccggaggtgaagggcattggttctgtgagtgctgcagcatctgaaccatggatggtgtttgataggagtaaacaagtgtggtactgtctgtagaatcaccacgcgttgtagctctctgccaagaatgtgagctcaatccagatagcagatatgccctccccgaagcttcatatcgttgccgactagccatcctatcctgcatctcctttagctctgcatcaagggaaatgcacaggcgatccccactcttccttgaaaaagattccgagagtatcctccgacaatgctcaagaatagccactgcatcagaaagagcacccctctcagctgctgcccttgcagcctcaatagcttcagcagcacggacacggttcctctcccgatcaacctccatgcaaactggctcagacgtaggagactttggccttaggatttttacctcatctgcttgaatcttgatggcttcattcgttactgaatctctataggcacatgcaaccttcaaaagcatggtctgatcacgagattgtgggaagctcaaagatagtaagaagtccctctcctcatcagcataaagatgaccaacttcaattgatccatttcgtccatctccagccaccttactcaagtaactaccagatttgatagtatgaagctgaacactaggatgcacgcattccacagttagtcgcatatcctgaacaacaacactaagaagcccaccaatgcactgagcaaatgcatcctgaatcacactttcatcctcgataaaggaaaatgtaccaccagaggactcagcaattgagtgcagagcatctgaatcatgatctgcaccaaaaccaaagccatggacaggcactgtgcagatagtatgattcagaatggaagatggaacaagtgacctataatctggacgggttcccctaacatttgaggaaatattgtatgtgtcttgaccatctgataacagaataatgctgcagactggattcttataattgcgatcctcaataaccttggcagctttcttcaatgcatcagcaatgttcgtaccaccaccagcaccaagcaagttgacagcctgcaaggctttctgcctgccagagtgagacatccgtcggagatgaaacaaccttctggcagtagatgagaaagcaataactgaaaggcgatccgaaggcccaaggtgttgaataacaaaacccatggctcgttttaggagtgctagtttggtgcctgccatactgccactaacatcaagcacagtaaccagatcaacaggagcacgagatgtagggtatccaattgaggtggcattgaatggtctgcctgtgacttgttctgggttagcacaaggggcttttagatggatcaaaacagcaaaatcatcttcagatgacgactgtggaatggctgagaattcaggatatgtcttgatctccacagctctactgcatctagcatcatgactgtcaccagactctatcagctgcaaaggttcatcatcattgaaatcaactggctcagaagtatgggaaccagaagcttctcgatggtgacttggaacctggcgtagaagagccatgtaggtgccttgttggggtaatcgagcttgattcacattcaacccacttctaccacaaggtacaatagaagataacgagcggttaaagggtatctctttccacttcgctcgacaaactgggcatacataatttccatgtttcacactggaggagatgcagtggaagtgaaacatgtgagaacattcagcagtgaaaagtgcttgtccatggcctgacttcatgggatcgaaacatattgcgcacattccctgttgagagaaaaaaagaaagatgtatcaatttaattgtgcaacatcagaactcaccccttcacatttgaaatgtgcaatcaacatggagacatgtgttttaaaacatgaaacataagggcttaaagatgagccttgctgagaaaagacggttcaactgatattaatgatactttattgagaacaaaactttttgtatgttacatccaacatagtgaacagactggcatataacaacaaccctttgtcctgatatccacaccctgtacacccctatttaagtccttatcttcacagatcaattccactgtacagaattaagccctgcctagagtttaccatgctatgacagaagccaatctcaaattctgaatcaactccaagatctgcatagatatctccactaatctgcatgttcaacaaatttacttaggcccaccttaaattaccattatccagacttatttttcatcccaattcttcatcaaagtgtatccacgttgaacaatatatttgtttgttatttctgaaacatagtcagatagacacaaactgcaattcatggactaaagttactactttcttgatttattttcattggatcaatatggcaacttgaatagggcctcacgtgaaagctaaacaaaaatatatcagaaacacataccagaactaaatgaattgatgtcatatcacatccattccatcttttttgtgacatacaaggtgttggatctattagttcattggtgccatcataagctaaggctgtgtttagttccacgccgaaattggaagtttgaagaaattgaaacgatgtaacggaaaagttggaagtttgtgtgtagaaaagttcgatgtgacggagaagttggaagtttgaagaaaaaagttggaatctaaacaggacctaagataggcactgttattgattttgactaaaacataaaaaccaaagcatgttcaaacaaatacatcttttgactaacaccaagtcagcaaccacaactgtgttttatattttatgataatgtatgcacgtcataaataccaatggaaacagcacacctgattttacggtttccttactgataacttaaaagaaatacatattttgcatttgggcaccaatatatgttgcatttggcggcgttaccttgacaaataaaatcattttaaaccagagaaaccacaaagaattgtcagacttgcatgcgtgtcaatatattcaaataaacacagtaagcgttcatgccagtttaccaaattgtcaaatttgataatatagacaattcaagcttagcaaaggcagtaatgcagaaatcacaataaataactgtgcgatgcttattatcagaacttttcaagtcttcacttctgaccacggcagataaatgtcaaccaattgagtaatgagtaatgaggaaatcctcgtgaagtagttggtcaaacagggcactaccatacacaatatctcgctaaatcagaactgctactaaacaaaaggtgtgaacacagcaataaaaggcatcaatgaacaccacacgaaaaaatagtattgtatcagaaaacatcacaaattgacattgaccattcaaagagatcacgcacatgccatgacaactaaataaagataaatataaaaagaacagtataaggtaattataataagaggctggtgatacaaattttcagtgatggatgacagctacagttggaaaacatgcctttacaaaattaattggagttggagtacgtagtagtagtactaacggagtactaagagagagacggcaggatgatactacacgtgaacacatggggagttgctgaggaaagaagcgaactttcccattccggaacgagcaagtggaacagtagaaaagaagcttacgttaagatatgaatgtatcttagacagaaaaaaaacaactgggtttttttatttgaaataacccataacgaagcgcgataccgagggggaaaaataccagcagactgatagctgatagaaattcgtaagaatctctgttggcgtataaatttgagaaaaagaaacaagcagcaaatttttgtactatggaagatatgaaataaatacaacagagcccaaaaataagctataaaacacaaattgattcctttctgaatggtgaagaacaaaatggtatgatagtttgctggaacatgacacgaacaatggagcaacaagatgtagccaatgacggatgcatctcttttcttttttggatattcctttgaataatttagagaataaatagtttgcagaatcatcaaaatctgcacacaaaatggttttttattacaaaatgggcaagacccatgtttcctcagaaacaacataggatgatttcaattgcagacaaagtaacaaaggaaatgacaaatccaaactagcagaggcgaggctcaagacaaaactcagtattaaaaaaacagatgcatacaaaaaaaaaattgctagacacaaagaaaggaaacgcccattactgcaaccaaaaactgtcggccaggggaagcacatctgaatctaaatcgttcacgggtgaagccacattgctccaaatccgcgcctaaccccgaccaagaaccccggaggaaaccccaatctgctccgcatttcacatccagccaccccgaaacaaggctaccacggatacaatccaaggcacaggttatataactcacaatgagaagaagagggagaaaaggaaaagagcctaaccttggcggacttggtccctgacttggacctccggagcggggctcccggcaacgccgcggccggcgtattcggcgccgacacatgcgccgccgtcgccgccgccgaagacgcatcctgggagagcgcatccgacgcgcggcgctcgctgacaccgtcctcccagtcgccggcgacggcggggaggcgaacgcagaggccggcgcccagcgccttcttggccttcctccacatcccctccattgccccctagagcgcgcacacacctctcgcccctagcacagattcgtccctactcgcgacaagcaactacccgctacaaggagaggagatgggcggttttgacgaggaggagggggaggagccgccattggagagtctgagtggcggtggtgaatggtggtggcgatgctgcggctcttggtttgacccgtgcgccgctgctgatgagagggacagatgacaggcgaggaggcagacagccaagcagaggttgaggagg
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| CDS seq | atggaggggatgtggaggaaggccaagaaggcgctgggcgccggcctctgcgttcgcctccccgccgtcgccggcgactgggaggacggtgtcagcgagcgccgcgcgtcggatgcgctctcccaggatgcgtcttcggcggcggcgacggcggcgcatgtgtcggcgccgaatacgccggccgcggcgttgccgggagccccgctccggaggtccaagtcagggaccaagtccgccaagggaatgtgcgcaatatgtttcgatcccatgaagtcaggccatggacaagcacttttcactgctgaatgttctcacatgtttcacttccactgcatctcctccagtgtgaaacatggaaattatgtatgcccagtttgtcgagcgaagtggaaagagataccctttaaccgctcgttatcttctattgtaccttgtggtagaagtgggttgaatgtgaatcaagctcgattaccccaacaaggcacctacatggctcttctacgccaggttccaagtcaccatcgagaagcttctggttcccatacttctgagccagttgatttcaatgatgatgaacctttgcagctgatagagtctggtgacagtcatgatgctagatgcagtagagctgtggagatcaagacatatcctgaattctcagccattccacagtcgtcatctgaagatgattttgctgttttgatccatctaaaagccccttgtgctaacccagaacaagtcacaggcagaccattcaatgccacctcaattggataccctacatctcgtgctcctgttgatctggttactgtgcttgatgttagtggcagtatggcaggcaccaaactagcactcctaaaacgagccatgggttttgttattcaacaccttgggccttcggatcgcctttcagttattgctttctcatctactgccagaaggttgtttcatctccgacggatgtctcactctggcaggcagaaagccttgcaggctgtcaacttgcttggtgctggtggtggtacgaacattgctgatgcattgaagaaagctgccaaggttattgaggatcgcaattataagaatccagtctgcagcattattctgttatcagatggtcaagacacatacaatatttcctcaaatgttaggggaacccgtccagattataggtcacttgttccatcttccattctgaatcatactatctgcacagtgcctgtccatggctttggttttggtgcagatcatgattcagatgctctgcactcaattgctgagtcctctggtggtacattttcctttatcgaggatgaaagtgtgattcaggatgcatttgctcagtgcattggtgggcttcttagtgttgttgttcaggatatgcgactaactgtggaatgcgtgcatcctagtgttcagcttcatactatcaaatctggtagttacttgagtaaggtggctggagatggacgaaatggatcaattgaagttggtcatctttatgctgatgaggagagggacttcttactatctttgagcttcccacaatctcgtgatcagaccatgcttttgaaggttgcatgtgcctatagagattcagtaacgaatgaagccatcaagattcaagcagatgaggtaaaaatcctaaggccaaagtctcctacgtctgagccagtttgcatggaggttgatcgggagaggaaccgtgtccgtgctgctgaagctattgaggctgcaagggcagcagctgagaggggtgctctttctgatgcagtggctattcttgagcattgtcggaggatactctcggaatctttttcaaggaagagtggggatcgcctgtgcatttcccttgatgcagagctaaaggagatgcaggataggatggctagtcggcaacgatatgaagcttcggggagggcatatctgctatctggattgagctcacattcttggcagagagctacaacgcgtggtgattctacagacagtaccacacttgtttactcctatcaaacaccatccatggttcagatgctgcagcactcacagaaccaatgcccttcacctccgggcccgaggccgcagctccgacaaactaggtcactcttggagaaaccccatccaaggtag
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| Protein seq | MEGMWRKAKKALGAGLCVRLPAVAGDWEDGVSERRASDALSQDASSAAATAAHVSAPNTPAAALPGAPLRRSKSGTKSAKGMCAICFDPMKSGHGQALFTAECSHMFHFHCISSSVKHGNYVCPVCRAKWKEIPFNRSLSSIVPCGRSGLNVNQARLPQQGTYMALLRQVPSHHREASGSHTSEPVDFNDDEPLQLIESGDSHDARCSRAVEIKTYPEFSAIPQSSSEDDFAVLIHLKAPCANPEQVTGRPFNATSIGYPTSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFHLRRMSHSGRQKALQAVNLLGAGGGTNIADALKKAAKVIEDRNYKNPVCSIILLSDGQDTYNISSNVRGTRPDYRSLVPSSILNHTICTVPVHGFGFGADHDSDALHSIAESSGGTFSFIEDESVIQDAFAQCIGGLLSVVVQDMRLTVECVHPSVQLHTIKSGSYLSKVAGDGRNGSIEVGHLYADEERDFLLSLSFPQSRDQTMLLKVACAYRDSVTNEAIKIQADEVKILRPKSPTSEPVCMEVDRERNRVRAAEAIEAARAAAERGALSDAVAILEHCRRILSESFSRKSGDRLCISLDAELKEMQDRMASRQRYEASGRAYLLSGLSSHSWQRATTRGDSTDSTTLVYSYQTPSMVQMLQHSQNQCPSPPGPRPQLRQTRSLLEKPHPR |
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| Function | E3 ubiquitin-protein ligase WAV3 [UniProtKB/Swiss-Prot:Q9LTA6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025130 | OsLima_02g0025130.01 | Chr02 | 26403324 | 26409028 | - | NAM | ||
| CDS seq | atggaggggatgtggaggaaggccaagaaggcgctgggcgccggcctctgcgttcgcctccccgccgtcgccggcgactgggaggacggtgtcagcgagcgccgcgcgtcggatgcgctctcccaggatgcgtcttcggcggcggcgacggcggcgcatgtgtcggcgccgaatacgccggccgcggcgttgccgggagccccgctccggaggtccaagtcagggaccaagtccgccaagggaatgtgcgcaatatgtttcgatcccatgaagtcaggccatggacaagcacttttcactgctgaatgttctcacatgtttcacttccactgcatctcctccagtgtgaaacatggaaattatgtatgcccagtttgtcgagcgaagtggaaagagataccctttaaccgctcgttatcttctattgtaccttgtggtagaagtgggttgaatgtgaatcaagctcgattaccccaacaaggcacctacatggctcttctacgccaggttccaagtcaccatcgagaagcttctggttcccatacttctgagccagttgatttcaatgatgatgaacctttgcagctgatagagtctggtgacagtcatgatgctagatgcagtagagctgtggagatcaagacatatcctgaattctcagccattccacagtcgtcatctgaagatgattttgctgttttgatccatctaaaagccccttgtgctaacccagaacaagtcacaggcagaccattcaatgccacctcaattggataccctacatctcgtgctcctgttgatctggttactgtgcttgatgttagtggcagtatggcaggcaccaaactagcactcctaaaacgagccatgggttttgttattcaacaccttgggccttcggatcgcctttcagttattgctttctcatctactgccagaaggttgtttcatctccgacggatgtctcactctggcaggcagaaagccttgcaggctgtcaacttgcttggtgctggtggtggtacgaacattgctgatgcattgaagaaagctgccaaggttattgaggatcgcaattataagaatccagtctgcagcattattctgttatcagatggtcaagacacatacaatatttcctcaaatgttaggggaacccgtccagattataggtcacttgttccatcttccattctgaatcatactatctgcacagtgcctgtccatggctttggttttggtgcagatcatgattcagatgctctgcactcaattgctgagtcctctggtggtacattttcctttatcgaggatgaaagtgtgattcaggatgcatttgctcagtgcattggtgggcttcttagtgttgttgttcaggatatgcgactaactgtggaatgcgtgcatcctagtgttcagcttcatactatcaaatctggtagttacttgagtaaggtggctggagatggacgaaatggatcaattgaagttggtcatctttatgctgatgaggagagggacttcttactatctttgagcttcccacaatctcgtgatcagaccatgcttttgaaggttgcatgtgcctatagagattcagtaacgaatgaagccatcaagattcaagcagatgaggtaaaaatcctaaggccaaagtctcctacgtctgagccagtttgcatggaggttgatcgggagaggaaccgtgtccgtgctgctgaagctattgaggctgcaagggcagcagctgagaggggtgctctttctgatgcagtggctattcttgagcattgtcggaggatactctcggaatctttttcaaggaagagtggggatcgcctgtgcatttcccttgatgcagagctaaaggagatgcaggataggatggctagtcggcaacgatatgaagcttcggggagggcatatctgctatctggattgagctcacattcttggcagagagctacaacgcgtggtgattctacagacagtaccacacttgtttactcctatcaaacaccatccatggttcagatgctgcagcactcacagaaccaatgcccttcacctccgggcccgaggccgcagctccgacaaactaggtcactcttggagaaaccccatccaaggtag
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| Protein seq | MEGMWRKAKKALGAGLCVRLPAVAGDWEDGVSERRASDALSQDASSAAATAAHVSAPNTPAAALPGAPLRRSKSGTKSAKGMCAICFDPMKSGHGQALFTAECSHMFHFHCISSSVKHGNYVCPVCRAKWKEIPFNRSLSSIVPCGRSGLNVNQARLPQQGTYMALLRQVPSHHREASGSHTSEPVDFNDDEPLQLIESGDSHDARCSRAVEIKTYPEFSAIPQSSSEDDFAVLIHLKAPCANPEQVTGRPFNATSIGYPTSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFHLRRMSHSGRQKALQAVNLLGAGGGTNIADALKKAAKVIEDRNYKNPVCSIILLSDGQDTYNISSNVRGTRPDYRSLVPSSILNHTICTVPVHGFGFGADHDSDALHSIAESSGGTFSFIEDESVIQDAFAQCIGGLLSVVVQDMRLTVECVHPSVQLHTIKSGSYLSKVAGDGRNGSIEVGHLYADEERDFLLSLSFPQSRDQTMLLKVACAYRDSVTNEAIKIQADEVKILRPKSPTSEPVCMEVDRERNRVRAAEAIEAARAAAERGALSDAVAILEHCRRILSESFSRKSGDRLCISLDAELKEMQDRMASRQRYEASGRAYLLSGLSSHSWQRATTRGDSTDSTTLVYSYQTPSMVQMLQHSQNQCPSPPGPRPQLRQTRSLLEKPHPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.019561 | 0.164257 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0619600 | RBH | 0.088779 | 0.000000 | 1.447066 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40664 | RBH | 0.139209 | 0.150263 | 0.345492 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0619600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025350 | RBH | 0.0 | 5.298639 | 0.736159 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025510 | RBH | 0.0 | 0.364420 | 0.793664 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025350 | RBH | 0.0 | 1.074209 | 3.812698 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024950 | RBH | 0.0 | 0.059804 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025030 | RBH | 0.000000 | 2.336420 | 2.678438 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0400700 | RBH | 0.754452 | 0.472585 | 2.839266 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024910 | RBH | 0.0 | 0.460398 | 0.607386 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0430300 | RBH | 1.5671105 | 1.074425 | 7.278406 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019160 | RBH | 0.172285 | 0.042279 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024950 | RBH | 0.061810 | 2.047464 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025260 | RBH | 0.798281 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025160 | RBH | 0.0 | 0.080897 | 0.373263 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024680 | RBH | 0.079669 | 1.874509 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025340 | RBH | 0.053129 | 0.602796 | 1.543277 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025180 | RBH | 0.0 | 2.665822 | 1.880840 |
