Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0024790 | OGI:02095790 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:25973835-25978464 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatctccggccgttctgttcacgattccttccacttttttctattccaacggggcaagttttatggaggaggctgccgcacctaaaactatccaactcagcaaaagaagtactaggggcggatggtggatgcagctaatataataagttgcctctagtatagcactcaaacatttaatgctcgtatgggtgcatcagtttatttgatcagcaagtgccatctttgtggcactatgtggtgcacaataacttgaatgtttccaataaaacgagccacagatagaattggataaatcaaacgcttacattgatccataactaatgaccatggcaagatgacattaaataaaagtacaactaaataagttatgcaacaagtgataaagaagttcttgatctatatgacaattgatcaaccatggcaagacggcattaagcaaaagtagaactaaataagttctgcaacaagtgataaagaagttcttgatctagatgacaatagagcaacattaagactaaaaaacaccaaaagcctctgccattttattccagccacaccaaaatccactgcatcagctggcatctctctttgaagttaccaatctctgagtactctgcaacaggaagggatggagatattcacttgattatgtactaaatattatctctgtattaagtactaataaaataattagaaccgagcagcaacaatattagtttccatcgtataacaagcattaagctacagatgggcatacaaaaactgcacaatacttgtaatctggagcacattctagcaaaacaataacacgtgcacgtgatgatatagtatgaaatcatcacagtaaatacgccatttagcctttttgtgtcattcaaggtctatatcaaagcttacaatgaactgactacactcaaataatcaacaattcatacctgagagtaatataacatgagctaccatctataacaaagcatccacctgaaattaaataggcaaaagatgaataaaatggctaaacagttaggtaaaaaaatgcatatttgcagaaacctaccatgtttaattgtggtggttatttccaaaacgatgccaaatgtgctcaactaaatcatttttaagttgagtatgcactggacgagcacggatagctgcctttctgcgcagcacatcagctagagggatattaccaccagcccttacttcaggaggcagtaccatccctagtttatcattcaagtcaataggaatttcaattccctccctctcatcttcaactatcatattatggagaatgacacaagctagcatgattctcccaacactctttcttttccacaaccgtgctggatggcacacgatattgaatcgagactgcagcaccccaaaagcacgctccacatctttccttgccccttcttgatactgtgcaaacaacttatgcttatctgtttgaggaagtggtattgtcttcacaaaggcagcccattctgggtatataccgtcggcaaggtagtagcccatgctatactccttcccgttgacggtatactgaacattaggggcttcccctttcaacgcatcaaagaacaatggggactgattcaacacgttgatgtcattattggaaccagcgacaccaaagaaagcatgccatatccaaagatcctttgaagcaacggcttcaaggataattgttggcactccataatcaccacgggtgaattgacctctccatgccactggacatctttcccactgccaatgcatgcaatctatactccctaacattccagggaaaccatgagactcaccaatctgaagtaaacgcacaagatcctcacacgttggccgtctcaaatactcctcaccaaagacatcaatcacccctcttgcaaacatgtctaggcaatgcagtgaagtgctcttgccaatcttcaaatactcatctagggagtcggcagggctaccatatgctagcatgcgtattgctgccgtgcatttctgcaatggtgatagccctacacgaccagcacaatctaccctttgtgtgaaaaaggaagaccactgacttagggaccttactatacgaagaatgagaggcttttgcattctaaatctagaacgaaacatactctctggatagacaggattttcagcaaagtagtcagctacaagacgttgatgagcacctgcatgatccctccaaatgaccttccttgtacatcttcgacgccgaaatatgccagctgctaacttgaccttgatcttcgccgcgagacgcctagcaaaggagtctaggacatcccgctcggcaatgaactcttcaattattttggatgggtctagctcatcagaatcactagagaaggcaggtgggtgtgacatagttgagaaatgaagaaggattGgggggcttatgatctgaataggatatagcactatatatacagcaaagcttctaggtgggagatggactgtgttattactgttgcatgtttatctgaaacataataactgttgcatgtttatcagctactttgactacatcatttttaggagttttatggcacgttcttagagtgttgactctgcatgctgtttatgatagcagataaaatttgaacatttatgatggctaatacatgtgaacataaaaagaaattgccacctatataaaagaaattacttcactgtagaacacaatcagaaactgtatttacctcaatctgtttttacaaacagctcctccctcatacacttcaaagctaacacgtgctcagatctcacatcatctttcataccacttgtatctagcatcatgagagatcgatatgtttccagcatagccgcctttttgttctccactgctgctaggtgagtgaggcttttggcttcaaccttctcactcgaaacatgcttctgggtctctaatagagctcagtacgatcttcttttgttgtcttccgagcatctagaaatgtgtgcagctcatcttctaattctaaaatacaatccttaaccttctctttgcctttgcctttgcggtgtaccttagctgcttttgtccccaaaggtcgtttaaggtcgtcatcatcattattagtagaaggcaggtgctcccccacgttccccccatcatcaaatttccgttttttggacttttcaaggtcatctaaatatgcatgccactttggctggtcgcaaagaaccttgcagcagtacatgaacataaattgaccatctttgtaagtatcctcatacattttctgtgccttatcaattaattggacttcattttgtccactaacatagattgagctgacctccttccacgagctgcaaaaccacccaacctttttcttaattttctcaaaatggcttttgatttgcttcatatggcgtgcccttcttttgggggttgtgctgttgtaggcagtagcgacatctcccaagtattgatcgttcttcttgtacttaccttggattgaatcaactgagttattcagccaagcactaacctgaattattacaaaaggagatttagtcacatcacgcaatataaactgaatataaagaaaacacaattaacctactaatctcaagttctcctcctgtgtccatgtcagacgcttttcagtcctctcgacatcttcgtcattgtgaccaatgtcaacattgattggtacagtctgacttccttccacatgttgtgtggggattcgatgattattaaagtaactaagaaagccattaggaggatgagggctaattcccctgcaattgacgatagaaattttttttcttaaactgaatagaagatataaacatgcaattttttagcatttgtacatataactgtacaggtgggatagtatacaaataattcagaaaattttaacatttggagcatttgaagcaaaatctaaaatttaagaagcctaagtcatagcaaaatataggactaagagcctaagccataacaaaatcagaaaatatatcatagtaataatttctgaaaatatatcatagtagtaaaatatgtcttaggcttaggctcttaggctgttaggccatactaagagcctttctgaaattatccacgggtaacagcccaagagcctaagccataacaaaatcatgaagtagtaataattttaggatgcatatgtaatctgaatctgtctaagccatagcaaaatctgggacttagctaatttttttaacaaagatatgtgtgcctaagccatagcaaaattactgaagttaatcacaactaacagatgaattgagacaaataacaccggataaacatggatcaatattgttcagcatttattcaaagatacaagttattagcatatacatgtatatataccattcttgcatgtcagaggtcagatcagttgaagaaggacatgcaccgacttgctgctgcggcgttgtcaacccaggtgtggaggagccagcgtgaccttgcatcgtcggcggaaagaaccaagcacctggcgggtacgagcccggcatggcaaatggaagcagcagtggaggcacagaagggctcgtgatggcttggggcgccgctgccggcggcggcgcgacctccctcttcgaccgttgagatgacat
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| CDS seq | atgtcatctcaacggtcgaagagggaggtcgcgccgccgccggcagcggcgccccaagccatcacgagcccttctgtgcctccactgctgcttccatttgccatgccgggctcgtacccgccaggtgcttggttctttccgccgacgatgcaaggtcacgctggctcctccacacctgggttgacaacgccgcagcagcaagtcgagacccagaagcatgtttcgagtgagaaggttgaagccaaaagcctcactcacctagcagcagtggagaacaaaaaggcggctatgctggaaacatatcgatctctcatgatgctagatacaagtggtatgaaagatgatgtgagatctgagcacgtgttagctttgaagtgtatgagggaggagctgtgcggcagcctcctccataaaacttgccccgttggaatagaaaaaagtggaaggaatcgtgaacagaacggccggagatga
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| Protein seq | MSSQRSKREVAPPPAAAPQAITSPSVPPLLLPFAMPGSYPPGAWFFPPTMQGHAGSSTPGLTTPQQQVETQKHVSSEKVEAKSLTHLAAVENKKAAMLETYRSLMMLDTSGMKDDVRSEHVLALKCMREELCGSLLHKTCPVGIEKSGRNREQNGRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024790 | OsLima_02g0024790.01 | Chr02 | 25973835 | 25978464 | - | NAM | ||
| CDS seq | atgtcatctcaacggtcgaagagggaggtcgcgccgccgccggcagcggcgccccaagccatcacgagcccttctgtgcctccactgctgcttccatttgccatgccgggctcgtacccgccaggtgcttggttctttccgccgacgatgcaaggtcacgctggctcctccacacctgggttgacaacgccgcagcagcaagtcgagacccagaagcatgtttcgagtgagaaggttgaagccaaaagcctcactcacctagcagcagtggagaacaaaaaggcggctatgctggaaacatatcgatctctcatgatgctagatacaagtggtatgaaagatgatgtgagatctgagcacgtgttagctttgaagtgtatgagggaggagctgtgcggcagcctcctccataaaacttgccccgttggaatagaaaaaagtggaaggaatcgtgaacagaacggccggagatga
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| Protein seq | MSSQRSKREVAPPPAAAPQAITSPSVPPLLLPFAMPGSYPPGAWFFPPTMQGHAGSSTPGLTTPQQQVETQKHVSSEKVEAKSLTHLAAVENKKAAMLETYRSLMMLDTSGMKDDVRSEHVLALKCMREELCGSLLHKTCPVGIEKSGRNREQNGRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0311800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54440 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0311800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013860 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016870 | SBH | 0.0 | 0.0 | 0.222934 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0576300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024800 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013760 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0000500 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0000480 | SBH | 1.636531 | 2.637838 | 2.886284 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017460 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017180 | RBH | 0.0 | 0.0 | 0.0 |
