Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0024380 | OGI:02068530 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:25433477-25436869 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgcctcactgcccaccgccgccgctgtcaccaccgggcgcggccgccgccaccatgagagccctcatctccctctccaagctcacccgccgcctcctcccctccctcgccgtcgcccgcgccccactcccgcccctccgccgctgcctccacgcggaacccccaccgcctcctcatcacgcgccttcccccgtcgcctcccggatcctccagtccgagctgaccccgggcgcgggcgcggacgcggacgcggagcaagaacagcagccggcccccgaccccttgctcgacgagttcctcgcgcgcttcgtcgccgcgctgcggccgaccctcgccgcggcgttccccacccatgcccgccacgtgctcgacgagatgctccgcctcgtggcggaggccgtcctgtgccgcctcaccggggtcgagccggaggagggcggcgccgtcgagctcagcgacgacctctgggcggcggtgtgggaggtcagcgccgccgtgcgcgacgggatgcagcgggaccgggtccgcgccgagctccggggctacctccactgcgaggaggtgaaggagatgacgcggttcgcgtcggacgtcggcatccgcggcgagatgctccgcgagctccgcttcaagtgggcacgggagaagctcgaggaggtcgagttctaccggggcctcgacgacatgcgcgcccaggccgaggcggccgctaaccctgtcgcgctcccgccgcccaggctcgcagccttgccgcagaggaagggggagatcaagttcaagatacatgggttggacttgtcggacccaacgtggggtgaggttgtggagcgcgcggccgaggctgaagcgcattttgtgccacaggaggccaagccaatagaagggaaggcgaagaaggctgaggagaagctgatggcggttgatccgaggaaaggagacccggcgcctgccatggaagagtggaaggaggagctgctgccgaaacgtgccgactggatggcgctgctcgagcgtcttaaagcccgcaatgttgagttgtatctcaaggtgatatatcctttacttgaaggctctactattgtgccttatgtatgtcatgctagtcaagtagattactttcaggttgtaaaattccttgttctttcatggcacatcttctagttttaggtgcttttgctgctgcgctaaccgctaaaataccctgattatgtgatttcttggtttgatcagtttgaagtgtgcttttgctgctgcactaaaatggcctgattatgctttcttaggttgaccagtatgaactgtgccatttgcatcacattacttgttgacttatagtatttgacgataaaggaaccatcaatatatgtaatagtctttctgtatcagatatagctcactttcaccctctccaaaatgcatcttctgaccactaattttgttcagcgttttgttgaagattttaaacaataagatgtgttatctgatatttgttcatgattgttgcctatttaggaatagtgcaaatgttgcattcgtctcccattgaaatcctaagttttagctactagcataatcagatagactgctattacatgtccagctttcccatgattgagatagttgttctgcaccaacttttctctgtaacctatgactatttcagctgtatttaacgtggtcaggctagttcacatggaaatgaaacttcaatttgtggacaattggcatttaaatccattatttttaaattgagggagtactttgcattttgtaaagttggccaactgccactgagtttagaaagccttcagccatccacttacattgaaatctcttttgtagtttcacatgtatgctgtgttgtaatttacaggttgctgaaattctgctggctgatgaatcctttggtgcaaccattcgtgattactctaagttaatcgatcttcactctaaagcaaatcatgtggaagacgcagaaaggattctaggtaaaatgaaagagaatggtattgcacctgatgtcgtcacatccatcactttagtccacatgtattgcaaggtggggaatcttgaacaagccaatcaggcatttcaattccttaagggggaaggcttcccaccagatatgaagcttttcacgtcaatgatcagagctcatcttaagtctggagaaccaaaacaagcagaaaatttgttacgtgaaatggagagatcgatcaaacccacaaaggaactattcatggatgtaatcctggcatttgctcagcgtggcatgatagatggagccgaaagggtgaaaacatcgatgttacttgctggattccagctcacgccagagttatacacatcacttatagaagcatatggacggggtggtcacgttggccaagcatataccctgtttgagcagatgaggagttctggacatgaaccagatgatcgttgcgttgctggtatgatggttgcctacatgatgaagaaccaactggaccacgctctgagcttcctgttgaagttagagaaggatggacttaaacctggagttaaaacaaaccttgtcttgctggattggttgtctaggttgcagctagtgcaggaggctgaacaagttgtgcagaagattagaaaggctggagaggaacccctggaaatgcatgttttccttgctgatatgtatgcaaagtcacaacaggaagagagaacccgcaaatccctcaagattttagaggagaagaagaaattattgaaggcttatcattttgagaggattatagcaggccttctcgaagggggtttcacggaagaagccaataaatatttcaaaatgatgaaatcccatggctttgttccatcaccaacaattgagattggggtcaaggctagttttggggttaggcggggtgttcatccaactggtaggcatcgtggttaaggctttgtccgttggcagtgatcagctgccattcaggcactgattctggtttgaaaatcttgaagtagcactgacgacgccatagccaattctgtcgaaccgaagcggcaaaaaaaatttccggcttcaattggttttgtttgatctgatatcagatgtcttcattttgaagatgcctccatgaactatggattcatacaagtagatggccgcgtgtcctgttattgccgggattttttttcctcatcaattgtacttgcatgctcacacttaataagtcttttagtcactgtaacgcctggatatctaggctgtgcttgtgccaacaatcggatttatcttagcaaatatcagttatgacttccctgtcataggcatttgtcaccaaataaatgtttacattttaatgaacaatgaaattatatcacactgtcaaattggtgcagatgcactaatgcgct
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| CDS seq | atgagagccctcatctccctctccaagctcacccgccgcctcctcccctccctcgccgtcgcccgcgccccactcccgcccctccgccgctgcctccacgcggaacccccaccgcctcctcatcacgcgccttcccccgtcgcctcccggatcctccagtccgagctgaccccgggcgcgggcgcggacgcggacgcggagcaagaacagcagccggcccccgaccccttgctcgacgagttcctcgcgcgcttcgtcgccgcgctgcggccgaccctcgccgcggcgttccccacccatgcccgccacgtgctcgacgagatgctccgcctcgtggcggaggccgtcctgtgccgcctcaccggggtcgagccggaggagggcggcgccgtcgagctcagcgacgacctctgggcggcggtgtgggaggtcagcgccgccgtgcgcgacgggatgcagcgggaccgggtccgcgccgagctccggggctacctccactgcgaggaggtgaaggagatgacgcggttcgcgtcggacgtcggcatccgcggcgagatgctccgcgagctccgcttcaagtgggcacgggagaagctcgaggaggtcgagttctaccggggcctcgacgacatgcgcgcccaggccgaggcggccgctaaccctgtcgcgctcccgccgcccaggctcgcagccttgccgcagaggaagggggagatcaagttcaagatacatgggttggacttgtcggacccaacgtggggtgaggttgtggagcgcgcggccgaggctgaagcgcattttgtgccacaggaggccaagccaatagaagggaaggcgaagaaggctgaggagaagctgatggcggttgatccgaggaaaggagacccggcgcctgccatggaagagtggaaggaggagctgctgccgaaacgtgccgactggatggcgctgctcgagcgtcttaaagcccgcaatgttgagttgtatctcaaggttgctgaaattctgctggctgatgaatcctttggtgcaaccattcgtgattactctaagttaatcgatcttcactctaaagcaaatcatgtggaagacgcagaaaggattctaggtaaaatgaaagagaatggtattgcacctgatgtcgtcacatccatcactttagtccacatgtattgcaaggtggggaatcttgaacaagccaatcaggcatttcaattccttaagggggaaggcttcccaccagatatgaagcttttcacgtcaatgatcagagctcatcttaagtctggagaaccaaaacaagcagaaaatttgttacgtgaaatggagagatcgatcaaacccacaaaggaactattcatggatgtaatcctggcatttgctcagcgtggcatgatagatggagccgaaagggtgaaaacatcgatgttacttgctggattccagctcacgccagagttatacacatcacttatagaagcatatggacggggtggtcacgttggccaagcatataccctgtttgagcagatgaggagttctggacatgaaccagatgatcgttgcgttgctggtatgatggttgcctacatgatgaagaaccaactggaccacgctctgagcttcctgttgaagttagagaaggatggacttaaacctggagttaaaacaaaccttgtcttgctggattggttgtctaggttgcagctagtgcaggaggctgaacaagttgtgcagaagattagaaaggctggagaggaacccctggaaatgcatgttttccttgctgatatgtatgcaaagtcacaacaggaagagagaacccgcaaatccctcaagattttagaggagaagaagaaattattgaaggcttatcattttgagaggattatagcaggccttctcgaagggggtttcacggaagaagccaataaatatttcaaaatgatgaaatcccatggctttgttccatcaccaacaattgagattggggtcaaggctagttttggggttaggcggggtgttcatccaactggtaggcatcgtggttaa
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| Protein seq | MRALISLSKLTRRLLPSLAVARAPLPPLRRCLHAEPPPPPHHAPSPVASRILQSELTPGAGADADAEQEQQPAPDPLLDEFLARFVAALRPTLAAAFPTHARHVLDEMLRLVAEAVLCRLTGVEPEEGGAVELSDDLWAAVWEVSAAVRDGMQRDRVRAELRGYLHCEEVKEMTRFASDVGIRGEMLRELRFKWAREKLEEVEFYRGLDDMRAQAEAAANPVALPPPRLAALPQRKGEIKFKIHGLDLSDPTWGEVVERAAEAEAHFVPQEAKPIEGKAKKAEEKLMAVDPRKGDPAPAMEEWKEELLPKRADWMALLERLKARNVELYLKVAEILLADESFGATIRDYSKLIDLHSKANHVEDAERILGKMKENGIAPDVVTSITLVHMYCKVGNLEQANQAFQFLKGEGFPPDMKLFTSMIRAHLKSGEPKQAENLLREMERSIKPTKELFMDVILAFAQRGMIDGAERVKTSMLLAGFQLTPELYTSLIEAYGRGGHVGQAYTLFEQMRSSGHEPDDRCVAGMMVAYMMKNQLDHALSFLLKLEKDGLKPGVKTNLVLLDWLSRLQLVQEAEQVVQKIRKAGEEPLEMHVFLADMYAKSQQEERTRKSLKILEEKKKLLKAYHFERIIAGLLEGGFTEEANKYFKMMKSHGFVPSPTIEIGVKASFGVRRGVHPTGRHRG |
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| Function | Pentatricopeptide repeat-containing protein At1g19525 [UniProtKB/Swiss-Prot:Q940Z1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024380 | OsLima_02g0024380.01 | Chr02 | 25433477 | 25436869 | + | NAM | ||
| CDS seq | atgagagccctcatctccctctccaagctcacccgccgcctcctcccctccctcgccgtcgcccgcgccccactcccgcccctccgccgctgcctccacgcggaacccccaccgcctcctcatcacgcgccttcccccgtcgcctcccggatcctccagtccgagctgaccccgggcgcgggcgcggacgcggacgcggagcaagaacagcagccggcccccgaccccttgctcgacgagttcctcgcgcgcttcgtcgccgcgctgcggccgaccctcgccgcggcgttccccacccatgcccgccacgtgctcgacgagatgctccgcctcgtggcggaggccgtcctgtgccgcctcaccggggtcgagccggaggagggcggcgccgtcgagctcagcgacgacctctgggcggcggtgtgggaggtcagcgccgccgtgcgcgacgggatgcagcgggaccgggtccgcgccgagctccggggctacctccactgcgaggaggtgaaggagatgacgcggttcgcgtcggacgtcggcatccgcggcgagatgctccgcgagctccgcttcaagtgggcacgggagaagctcgaggaggtcgagttctaccggggcctcgacgacatgcgcgcccaggccgaggcggccgctaaccctgtcgcgctcccgccgcccaggctcgcagccttgccgcagaggaagggggagatcaagttcaagatacatgggttggacttgtcggacccaacgtggggtgaggttgtggagcgcgcggccgaggctgaagcgcattttgtgccacaggaggccaagccaatagaagggaaggcgaagaaggctgaggagaagctgatggcggttgatccgaggaaaggagacccggcgcctgccatggaagagtggaaggaggagctgctgccgaaacgtgccgactggatggcgctgctcgagcgtcttaaagcccgcaatgttgagttgtatctcaaggttgctgaaattctgctggctgatgaatcctttggtgcaaccattcgtgattactctaagttaatcgatcttcactctaaagcaaatcatgtggaagacgcagaaaggattctaggtaaaatgaaagagaatggtattgcacctgatgtcgtcacatccatcactttagtccacatgtattgcaaggtggggaatcttgaacaagccaatcaggcatttcaattccttaagggggaaggcttcccaccagatatgaagcttttcacgtcaatgatcagagctcatcttaagtctggagaaccaaaacaagcagaaaatttgttacgtgaaatggagagatcgatcaaacccacaaaggaactattcatggatgtaatcctggcatttgctcagcgtggcatgatagatggagccgaaagggtgaaaacatcgatgttacttgctggattccagctcacgccagagttatacacatcacttatagaagcatatggacggggtggtcacgttggccaagcatataccctgtttgagcagatgaggagttctggacatgaaccagatgatcgttgcgttgctggtatgatggttgcctacatgatgaagaaccaactggaccacgctctgagcttcctgttgaagttagagaaggatggacttaaacctggagttaaaacaaaccttgtcttgctggattggttgtctaggttgcagctagtgcaggaggctgaacaagttgtgcagaagattagaaaggctggagaggaacccctggaaatgcatgttttccttgctgatatgtatgcaaagtcacaacaggaagagagaacccgcaaatccctcaagattttagaggagaagaagaaattattgaaggcttatcattttgagaggattatagcaggccttctcgaagggggtttcacggaagaagccaataaatatttcaaaatgatgaaatcccatggctttgttccatcaccaacaattgagattggggtcaaggctagttttggggttaggcggggtgttcatccaactggtaggcatcgtggttaa
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| Protein seq | MRALISLSKLTRRLLPSLAVARAPLPPLRRCLHAEPPPPPHHAPSPVASRILQSELTPGAGADADAEQEQQPAPDPLLDEFLARFVAALRPTLAAAFPTHARHVLDEMLRLVAEAVLCRLTGVEPEEGGAVELSDDLWAAVWEVSAAVRDGMQRDRVRAELRGYLHCEEVKEMTRFASDVGIRGEMLRELRFKWAREKLEEVEFYRGLDDMRAQAEAAANPVALPPPRLAALPQRKGEIKFKIHGLDLSDPTWGEVVERAAEAEAHFVPQEAKPIEGKAKKAEEKLMAVDPRKGDPAPAMEEWKEELLPKRADWMALLERLKARNVELYLKVAEILLADESFGATIRDYSKLIDLHSKANHVEDAERILGKMKENGIAPDVVTSITLVHMYCKVGNLEQANQAFQFLKGEGFPPDMKLFTSMIRAHLKSGEPKQAENLLREMERSIKPTKELFMDVILAFAQRGMIDGAERVKTSMLLAGFQLTPELYTSLIEAYGRGGHVGQAYTLFEQMRSSGHEPDDRCVAGMMVAYMMKNQLDHALSFLLKLEKDGLKPGVKTNLVLLDWLSRLQLVQEAEQVVQKIRKAGEEPLEMHVFLADMYAKSQQEERTRKSLKILEEKKKLLKAYHFERIIAGLLEGGFTEEANKYFKMMKSHGFVPSPTIEIGVKASFGVRRGVHPTGRHRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.303706 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0611400 | RBH | 2.771283 | 3.030990 | 4.935445 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39820 | RBH | 1.764049 | 1.924250 | 1.201142 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0611400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024610 | RBH | 1.099480 | 10.231142 | 5.793905 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024760 | RBH | 0.097055 | 1.530484 | 2.835545 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024760 | RBH | 1.593819 | 8.635170 | 8.004090 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024410 | RBH | 0.081192 | 0.480182 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024300 | RBH | 3.058539 | 20.828138 | 8.801200 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0393000 | RBH | 6.25427 | 10.3442995 | 3.5679385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024130 | RBH | 0.221035 | 0.620706 | 0.985026 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0421900 | RBH | 5.2841355 | 7.1104555 | 17.1827325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017650 | SBH | 0.183534 | 0.082828 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024380 | RBH | 0.355280 | 24.702679 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024690 | RBH | 2.351979 | 15.898960 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024400 | RBH | 0.972945 | 1.989615 | 0.878095 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024150 | RBH | 0.274179 | 4.812469 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024570 | RBH | 0.938551 | 7.595925 | 2.064322 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024420 | RBH | 1.475886 | 5.728913 | 5.958144 |
