Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0024180 | OGI:02067930 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:25236101-25240821 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtctctcctctattctctctcctgtgtttccggcggaggcacgagcgcacggacagcctcctccccccgcctccacctccgcgcggtcgccgccggcgaggaggcggcgccggacgagctcctctccttccccgccacgccgtagcatcctcctcctcccccgcgcgcgcgccgctgggcgagcaagtctgggggccaggagcgagcggcgcggcgcggcccggccaggcctctcattccaccaccaccggcgcccatctcggcggctcggatcgaattcagaggtgattcgagagagactcttctctcgtagcccctccgttcactccctcctcctcctcgttgtctcgtgttccggcgtggcgtagattggagacctgtattgattttttttttttttttgcgccttcgcacgcagtttcgtcgcttgctctccgacggcggcgatgatggaggcggaggaggcgttccctccgcagaggaatccccgccgcgcgcggcgccgcgacctcaacgcactggtttgatccgattgaccccctcagTttttttttttaaaaaaatattattgttgttatataactccccatcggtttagcggccctgtggccctgtcattgtagacgtttgatgtatgcagggtttgaggttttactgtgaaatttgactctcgtttcgaggttttacctggaatggattgtctcgattttatggggggtttagggttccttacgtgactgaatggctgtgtgtttgcagtggttcatgttctagtaaggaattgtgatttcgggtttatatatttacagcggcaggttgtttgtgagtaaaggactcgaaggttaggatttttttgtagttccaatttgttcgtatttaggctttactgttttatattggtgagttggagtgacattttagtttcctgaggcagtttagttcaacccattatactagttcatcctcgattggttttgtgtgttgcaacctctgactattaggatttagtacttaacatagatgactgctccagctcttttaatgggccaaacgaggtatcatgccgtgccatcctgatgatcctaaatttgccaaacaaagtatcatgctgtgccatcctgataatcctaaatttaggacattctatatgtgcaagttcaacgagtagtgattccatttctatgttgtagagaaggttgattttttagttgtcatcaatttgtataagctggaagacactttaggttttgaacatgttgcatttgctatgttctgatgattgaggtattgtttcaggatcccagtttagaagagtctgatggagaggacattggtgttccagaagttggcatggtgtttaataaccacacggaggtcaaccgattctaccgaaggtatgctcgccgtgttggctttggggtgtctgttaggaggtcctcattttcacaagagggcacctgcttatatctggagctcatgtgctgcaaaggagggcggccacgttatgagccaaagttcaggaaacgggcctcttcaaccactaactgtccagccaagatcagagtaaagctatggggagataaattgttgcatgtagagttggcaatccttgatcataatcatcctgttagcccagcaatggcaaggtttttgaactcctataagcagctatctggccctgcaaagaggcgattacgtatgggtggccctggagctatgccagtggaagaaccaagcaagatgcctgttgataagttgggtgcacttgaggagcttttgtttggagagagcaagcaccatagttttgttgagaggggccgcttgaagttccaacctggagattcagaagcccttcggcttttctttactcgtatgcaagccaaaaatgcaaacttctttaatgtcattgacttggatgatgaaggctgtgtcagaaatgtcttctgggcagatgcacggtcaagatccatgtatgagttctataacgatgttgtcacacttgacacatcgtatgtggtcggtaaatatgatatgcctcttgcaacttttattggggtgaatcatcatggccaatctgttttattgggttgtggcctgctttcagatgaaacagcagaaacctattcatggctatttaaggcttggatagcatgcatgtctggtaatcttccaaaggctatcatcactggccactgcaggggcatccagagtgcggttgctgaggttattcctggagtccatcatagaatatgcctatttcatataatgaggaaggcgacagagcgattaggtggtctgtcggagtacgcagctatcagcaaggctttccaaaaagctgtatatgattctttaaccatagatgagtttgaaggaaattggaatgctctgattacatacaatgggcttcagggtaatgactggctaagatcaatttatgagtgccgatactcatgggttcctgtttttcttaaagatacattttgggcaggaatgtctgctacacaaagaaatgaaaatatcattcctttctttgatggatatgtagatttgaaaaccacattgaagcactttcttgggaagtatgagatggccttgcaaagcaaatatgaaaaggaggcccaagcagattttgagacattccataagcagtgcccacctgtgtcaaaattctatatggaagagcaactgtccaaggtatacacccataacatcttcaagaaattccaagatgaaattgaagcaataatgtactgccatgtatctttcattaatgttgatggcctcatatccacattcgatgtcaaggaatggattttccttgaagatggtaaaaggactatgagcaagatctttacagtgacaaataacacagataaaaatgatttaacttgtatctgtggaggtttccagtttaatggaatattgtgtaggcatagtctctcagtcctcaagtttcaacaggttcgtgaaattcctccacactatgttcttgataggtggaaaaaggatttcagacagttgcatgtgatggggcgtccttcaagtgatgttgttccaaacaatcgtgtggatcgatatgattatttgtcaatgagatgtctgcagctagttgattcagcagtcctatcagataaatatcgtcttgctttgagattggtgagggagatggagaagtttatgttaaacagcaacacgcatgatgatacacaaccaaggatcaagtctcgcattcctaaagcaaataaaccaaatacagtggttggtcaaaatctggtaaacgttggcacttacaatggaaatgataggcccaaagcaacaacagaggtatctgttcaacctgtagttaacattgtaaagatgcctattatgttggaagcattatggtaaataactatgagaataatcatcttaacccactgcctatctgattgatcttattttgcaagatgcaggcttcttcattaacacagggattggatgtccagaaggtactacatttagctatggcatgagtaaattttggtgcattatcctcttataggtgacatttgttaataaggatattgatttctattttttttttaactatagggaggagcagaaaagggcatagttcctgctggttacattggactgccagctaatgttcagcaattcgtaggcagtcaaacagcgattcgcccaagcattgtgtatatggttccggtatgtcaaagttacaaataactatatctgctcaactgtgccttgatagtatctacagcaccagaggaccaaattctaggatatttggttgcttttcttgcacaaacatatgtggattcatacaactcatctttatttgttaatgcataagccccaagtactcatcatttttcaggatatgtgctgtgaaattgattctttcttatttaatttttcagagtggtgttgacccacaggcatttggaaatggtgttctgatgcctgttgtgtaccagcagatgttccaggtttgtatatttttgtgttaggacttgagaagttaatccgttcgtcttgtaggatgatttcacgtttatcgctggtatatctaggtaccccagcagccaaatggaaccatgccagatacttcagcaaatggaaaaaggaagcggcctcgtgcccagaagccaacagaggcatctgaacagtcaaatggaaccccggcaacaggacccacatttgggtagattgaacagtttctcatttagtcagaactcagaacaggttttcttgaattctcacccctgttaaccttcattgtgcaatcgttcattgagtttgttagaatctgataaccacatttgccataacgttcacatattctccataactgcatcccaggtctttgtaaatatgcagaggaagtgaagagttgcctagagaacttcaaacggatgctagcactaacaaaagtacatcaaatccatcttggctgtgatctgaagcctttgtgctgcagagattgagcacggccaagcccaagcgccattcttcatttggatcatcctggagtgaagtccagggttgaaaaatagccttcacctcatttgactttagttgattccagcaacattagccgataatgtttttgtggctctgccatgatatacaagttctgaaatcccgctgtcgtttccatggtaatatgtaaatgattttttgatggactaacctggtcatttgactggattttttt
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| CDS seq | atgatggaggcggaggaggcgttccctccgcagaggaatccccgccgcgcgcggcgccgcgacctcaacgcactggatcccagtttagaagagtctgatggagaggacattggtgttccagaagttggcatggtgtttaataaccacacggaggtcaaccgattctaccgaaggtatgctcgccgtgttggctttggggtgtctgttaggaggtcctcattttcacaagagggcacctgcttatatctggagctcatgtgctgcaaaggagggcggccacgttatgagccaaagttcaggaaacgggcctcttcaaccactaactgtccagccaagatcagagtaaagctatggggagataaattgttgcatgtagagttggcaatccttgatcataatcatcctgttagcccagcaatggcaaggtttttgaactcctataagcagctatctggccctgcaaagaggcgattacgtatgggtggccctggagctatgccagtggaagaaccaagcaagatgcctgttgataagttgggtgcacttgaggagcttttgtttggagagagcaagcaccataatgaaattgaagcaataatgtactgccatgtatctttcattaatgttgatggcctcatatccacattcgatgtcaaggaatggattttccttgaagatggtaaaaggactatgagcaagatctttacagtgacaaataacacagataaaaatgatttaacttgtatctgtggaggtttccagtttaatggaatattgtgtaggcatagtctctcagtcctcaagtttcaacaggttcgtgaaattcctccacactatgttcttgataggtggaaaaaggatttcagacagttgcatgtgatggggcgtccttcaagtgatgttgttccaaacaatcgtgtggatcgatatgattatttgtcaatgagatgtctgcagctagttgattcagcagtcctatcagataaatatcgtcttgctttgagattggtgagggagatggagaagtttatgttaaacagcaacacgcatgatgatacacaaccaaggatcaagtctcgcattcctaaagcaaataaaccaaatacagtggttggtcaaaatctggtaaacgttggcacttacaatggaaatgataggcccaaagcaacaacagaggcttcttcattaacacagggattggatgtccagaagggaggagcagaaaagggcatagttcctgctggttacattggactgccagctaatgttcagcaattcgtaggcagtcaaacagcgattcgcccaagcattgtgtatatggttccgagtggtgttgacccacaggcatttggaaatggtgttctgatgcctgttgtgtaccagcagatgttccaggtaccccagcagccaaatggaaccatgccagatacttcagcaaatggaaaaaggaagcggcctcgtgcccagaagccaacagaggcatctgaacagtcaaatggaaccccggcaacaggacccacatttgggtag
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| Protein seq | MMEAEEAFPPQRNPRRARRRDLNALDPSLEESDGEDIGVPEVGMVFNNHTEVNRFYRRYARRVGFGVSVRRSSFSQEGTCLYLELMCCKGGRPRYEPKFRKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVSPAMARFLNSYKQLSGPAKRRLRMGGPGAMPVEEPSKMPVDKLGALEELLFGESKHHNEIEAIMYCHVSFINVDGLISTFDVKEWIFLEDGKRTMSKIFTVTNNTDKNDLTCICGGFQFNGILCRHSLSVLKFQQVREIPPHYVLDRWKKDFRQLHVMGRPSSDVVPNNRVDRYDYLSMRCLQLVDSAVLSDKYRLALRLVREMEKFMLNSNTHDDTQPRIKSRIPKANKPNTVVGQNLVNVGTYNGNDRPKATTEASSLTQGLDVQKGGAEKGIVPAGYIGLPANVQQFVGSQTAIRPSIVYMVPSGVDPQAFGNGVLMPVVYQQMFQVPQQPNGTMPDTSANGKRKRPRAQKPTEASEQSNGTPATGPTFG |
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| Function | Protein FAR1-RELATED SEQUENCE 6 [UniProtKB/Swiss-Prot:Q9SSQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024180 | OsLima_02g0024180.01 | Chr02 | 25236101 | 25240821 | + | NAM | ||
| CDS seq | atgatggaggcggaggaggcgttccctccgcagaggaatccccgccgcgcgcggcgccgcgacctcaacgcactggatcccagtttagaagagtctgatggagaggacattggtgttccagaagttggcatggtgtttaataaccacacggaggtcaaccgattctaccgaaggtatgctcgccgtgttggctttggggtgtctgttaggaggtcctcattttcacaagagggcacctgcttatatctggagctcatgtgctgcaaaggagggcggccacgttatgagccaaagttcaggaaacgggcctcttcaaccactaactgtccagccaagatcagagtaaagctatggggagataaattgttgcatgtagagttggcaatccttgatcataatcatcctgttagcccagcaatggcaaggtttttgaactcctataagcagctatctggccctgcaaagaggcgattacgtatgggtggccctggagctatgccagtggaagaaccaagcaagatgcctgttgataagttgggtgcacttgaggagcttttgtttggagagagcaagcaccataatgaaattgaagcaataatgtactgccatgtatctttcattaatgttgatggcctcatatccacattcgatgtcaaggaatggattttccttgaagatggtaaaaggactatgagcaagatctttacagtgacaaataacacagataaaaatgatttaacttgtatctgtggaggtttccagtttaatggaatattgtgtaggcatagtctctcagtcctcaagtttcaacaggttcgtgaaattcctccacactatgttcttgataggtggaaaaaggatttcagacagttgcatgtgatggggcgtccttcaagtgatgttgttccaaacaatcgtgtggatcgatatgattatttgtcaatgagatgtctgcagctagttgattcagcagtcctatcagataaatatcgtcttgctttgagattggtgagggagatggagaagtttatgttaaacagcaacacgcatgatgatacacaaccaaggatcaagtctcgcattcctaaagcaaataaaccaaatacagtggttggtcaaaatctggtaaacgttggcacttacaatggaaatgataggcccaaagcaacaacagaggcttcttcattaacacagggattggatgtccagaagggaggagcagaaaagggcatagttcctgctggttacattggactgccagctaatgttcagcaattcgtaggcagtcaaacagcgattcgcccaagcattgtgtatatggttccgagtggtgttgacccacaggcatttggaaatggtgttctgatgcctgttgtgtaccagcagatgttccaggtaccccagcagccaaatggaaccatgccagatacttcagcaaatggaaaaaggaagcggcctcgtgcccagaagccaacagaggcatctgaacagtcaaatggaaccccggcaacaggacccacatttgggtag
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| Protein seq | MMEAEEAFPPQRNPRRARRRDLNALDPSLEESDGEDIGVPEVGMVFNNHTEVNRFYRRYARRVGFGVSVRRSSFSQEGTCLYLELMCCKGGRPRYEPKFRKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVSPAMARFLNSYKQLSGPAKRRLRMGGPGAMPVEEPSKMPVDKLGALEELLFGESKHHNEIEAIMYCHVSFINVDGLISTFDVKEWIFLEDGKRTMSKIFTVTNNTDKNDLTCICGGFQFNGILCRHSLSVLKFQQVREIPPHYVLDRWKKDFRQLHVMGRPSSDVVPNNRVDRYDYLSMRCLQLVDSAVLSDKYRLALRLVREMEKFMLNSNTHDDTQPRIKSRIPKANKPNTVVGQNLVNVGTYNGNDRPKATTEASSLTQGLDVQKGGAEKGIVPAGYIGLPANVQQFVGSQTAIRPSIVYMVPSGVDPQAFGNGVLMPVVYQQMFQVPQQPNGTMPDTSANGKRKRPRAQKPTEASEQSNGTPATGPTFG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.201484 | 0.023300 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0608300 | RBH | 3.041631 | 1.532146 | 4.195739 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39540 | RBH | 2.027127 | 1.072968 | 1.077557 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0608300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024380 | RBH | 0.569193 | 4.934059 | 2.577604 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024520 | RBH | 0.222094 | 1.752574 | 1.767236 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024520 | RBH | 0.752047 | 5.263198 | 6.397114 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024160 | RBH | 0.061834 | 0.065892 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024060 | RBH | 3.628257 | 4.456792 | 12.644134 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0418100 | RBH | 7.160331 | 10.378751 | 14.12516 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016800 | RBH | 0.552294 | 0.447153 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024140 | RBH | 0.386386 | 9.452238 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024450 | RBH | 2.523885 | 10.047200 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024200 | RBH | 0.670708 | 0.573313 | 0.558039 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023900 | RBH | 0.253510 | 10.827317 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024330 | RBH | 0.449692 | 0.421288 | 1.247350 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024180 | RBH | 1.056883 | 7.988396 | 3.475631 |
