Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0024160 | OGI:02067900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:25225963-25231185 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccttcatctattattcctcccttcctactctactccctcgacttctcgagtctcgattctactctgtctccaatctacgcagcgaaagccggcgccgccgtctcctcgagcgcgccgacggcggagaagaccgcaggcacggcgtcgtctacggcctcctccccttccttccagaccccggccacggccgggccgcgccccgccctagcctccgccgccgcctccccagtccggccgcctggcctctccacgcgcgcacggccggggcgagcaggtcttttgggggtgggcgacgccgcccgtgccgcggcctcctcccacctgaatccatcccagctcgcgccgaattcggaggtactcgtctcctctctctctcttctctctccctttccctccaggtgtcccgtacaattccttctggatttccatcattccatgatgcctggtggattgtagctgctcgtgtttccacgaaagaaggtttgggggtttatctccgaatccttcttctgggagggatactctaattggtccggtttgctgcggaaatctgtggagctcgggtagatgctccgtgttagtttcgccaccgcgcactgcaaattctagtggagtgaagaggaatatggtagaggggttgccggcggagttgccaatcgtggacgtggccgctcgtttggatggcaagagctcggagctgccagagaatggtgcattgctgaagggtgctgaggaatcccaggtttggaatgttttagcttactcgggaagtgccaaatatatttgcttctattcgaatgatttgtgatgctttgtttgcttgctaggatttgggaggtaatcccgtggcggagttgacgttgcacgaaggcaaagaggtgatcctcgtcgatgacaatgatagtgagcaggaagacggtgggagtggcaaggtggatgagaatgcgccccgggtcggattgagattcaaaacttatgatgacgcgctgaagtactataagcaatatgccgcggattctggcttttcagcaatcattctgaagtcgtcctacttgaagtcaggggtgtgccggaggttggtgcttggatgcagtcgagctggaagagggagggcaaacgcatgctatctgtctagagaatcaacgaagataaattgtccagctaggatttcgttgaagctaaggcaagatagatggcttcacattgatgacgctaagcttgatcacaaccatccaccgaaccaatcctcggtgtcacatatgaactgttataagaaattgacagatgccaagaatgaggaaactgcttcaagatcaaaagggcgtaggaatgttcccataggtgacaaagagcaagggagctttactgagataggaaggcttaaatttggggaaggagatgatgagtacatccacaagttttttgggagcatgcagaacaagaatccaaatttcttctacttagtagatttggacaaacaagggcgcctaaggaacttgttctggagtgatgctaggtcacaggcagcacatgattactatggtcgtgatgttatttactttgacacttcatacttgaccgaaaaatatgatctgccacttgtcttctttactggggtgaataatcatggtcagcctgttttgtttggtactggattactttcagatctaggtgttgacagttatgtgtggttatttagggcattttttgcatgcatgaagggctgctacccagatgcaataatcactgagcattacaatgctattttagatgcagtgagagatgttctcccccaagttaaacaccgcctttgtctgtatcgtattatgaaagatgtagcagagaacttgaaagcacatgcagaattcaaaacaattaagaaagcactgaagaaagtaacctatgggtcactgaaagcctcagagtttgaagctgattggaagaagattattctggagcatggacttggagaaaatgaatgccttagttccctatatgagcatcggcagctatgggcacccgcctatctcaaaggccaattctgggcagggatgtcagtttcacagcgtggagagtctattgtttcatactatgatgggtttgtgtaccccaaaacttccctgaagcaatttttcagtaaatatgagatcatattggagaacaaatacaagaaagagttgcaagctgatgaagaatcctcccataggactcctttgactgtaacaaagttttacatggaagagcagctggccaaagaatacacaatcaacatgttcaagaaatttcaggacgagttgaaagcaacgatgtattgtgatggtatgccaactaaagttgatggacaatttgtcacctttgtggtgaaagaatgctcatacatggaagatggaaaggagaaggagggaaggaattatgaggtttacttttgcaagcaagagcttgttaattgtgaatgtgaatgtggtttctttcaattcactggaatcctatgtagacatatattatctgtgtttaagttgcaggagatgtttgagattccaataaggtttgttcttgatcgctggaaaagagactataagaaattgcatgctgatgcgctttgcaaaaatgatgaaatgctacctgatgtgctacctgatggcataatcgagcgtcatgatatcttgtttacacagtttcgtcaggtgcttaatctagggttcatatccgagggtaggtaccttgtagctctgaagttactgagacaagcagaaaagactcttctggatgatggagatagaggcaggcaggcagggcttctctcgtttgaggctgaagcacctgaaaatgatgaagggatttttagtcctgagttttcagagggtgtaaagaattctcagtcaacaaatgcaaagcgtcgaggtcgtccaacaaagaaactaattgaatctgattctgataccgtattacggccaaataaagagcaggtctatattcattcttggggcctaaagagcctaagatccatatttcactttctgttatatgaatatgccttcattgatttttttttttaatttctgctgagcaggattttctacggtcatcttttgtcactgatgagtctaatatgattcaaggggcaccctcagcctcacaccttgaaagtcctcacttgggagttgatttgatggtacttgttacctttgcctttgctatctactgctattatttgtgcatgtaaatatcttgttctgaacttgcacaggaaggaatacctccaaacctttcatttaatcatcattttggtatggatattaatcaccaacatcaagtgcccaaccaaccgaggatgctcccaagcaattttctgcaggtttttaccatacaactgctcaagcctttataccataatgttcatttgcactctttagttcatatatcattaaggatgaactcataacttttgatggtcattttccttttgtacattagcaagttactaactattcttctcactgtgcatatttgtctagtacaattaccaatgcctttaattttaaataaatgttgcaggcccaggcagattcccagggttatggaaatcaatgggctttcccaacattgcaggtttgtttccttggttcttgaattgcgtaggtcttcctacagatgtacatatataaggaaatgacatatatggctatattccaggataattcaatgctaagaactgcagcccgaagaggagtgtagaccctattttttggctctaattacagcagtagaattctaggtaatgtctgttttgttcttgcatcatgccatatgcttcagctttttttttatgtacctgtgagcattctgggattatttttcttttttacttagatacttgtttcttttcagttcaagaaataatccttatcatttactgggcgaagctttgttacttttcaattttatatatgcttgttacagtacatttctttacaaaaatgcatgtggttctccctccatttggaattgcctgtcattttaggccaaatcacaaagaccaaggtgtggttaattctttcatctgggacctgattacgcccttcaatacggtgttctctctaattaatggtagtcaagattactccaccattctgatcgtcattaaatcctagagccttgggtgagcatagatgagcagcaccttgccgcatgtctgagcaagacgtcataccagctgattttttttggatacgcataatctgtatcaactaactttggaacatgctactcttagcttatgattgggaattaatgaattgaattagatccaatgccatttgtgctagctagcattttacaagggaaatttaggaaaatactgcctagaaaacctaaaatgacaactatttgataataaaagcaagattgtaagacaacgttgaaaaggatacagaggaaatatctttctatacatacaaactaaggttcatgaagtccattatgttccttcttaggaagctcttggttcttgagtttttttggcttggcattctaatgtctgggtcacaaatattaatgctgtgaagcagctaagagaatatgcatagagtctgtacaatttttgggcataaaccttatttgtgaacttacaatttgcaattttattacctaacccttcacatgttaatatgcacatttgctgttgctagtttttatttcccttttccctaatgataccaaacatcatgtgcaaatatatattctctaatcatatgcacggattgaataaaaagtatagaagaaatcttatattccgctttaaaatataaagtcttctatataatctagaccaagggtagcatagagccatgcggtcttttttggtctccttgttagtatttacacaaatctaatatggcattgcagttttattcgattggagctctgactgtttcctctcactattaagcaaaaatcggttgactgtcaagaatatctggattttcaatatgtaatcaacagttcctatttaacctatacaagatccgttttgacttgttcacaaagtttggtaacatcggtgctttgtctgaaatgatcggatttgaaggcttgaaattcttcccagtgaagaatcatgcatcatatgcatttgtcatgccattttagctgtgtattaacttcacattcgtaaatttcagataccatgactcctccggcgctcgtaattactaccttaactaa
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| CDS seq | atggtagaggggttgccggcggagttgccaatcgtggacgtggccgctcgtttggatggcaagagctcggagctgccagagaatggtgcattgctgaagggtgctgaggaatcccaggatttgggaggtaatcccgtggcggagttgacgttgcacgaaggcaaagaggtgatcctcgtcgatgacaatgatagtgagcaggaagacggtgggagtggcaaggtggatgagaatgcgccccgggtcggattgagattcaaaacttatgatgacgcgctgaagtactataagcaatatgccgcggattctggcttttcagcaatcattctgaagtcgtcctacttgaagtcaggggtgtgccggaggttggtgcttggatgcagtcgagctggaagagggagggcaaacgcatgctatctgtctagagaatcaacgaagataaattgtccagctaggatttcgttgaagctaaggcaagatagatggcttcacattgatgacgctaagcttgatcacaaccatccaccgaaccaatcctcggtgtcacatatgaactgttataagaaattgacagatgccaagaatgaggaaactgcttcaagatcaaaagggcgtaggaatgttcccatagagaacttgaaagcacatgcagaattcaaaacaattaagaaagcactgaagaaagtaacctatgggtcactgaaagcctcagagtttgaagctgattggaagaagattattctggagcatggacttggagaaaatgaatgccttaagttgcaagctgatgaagaatcctcccataggactcctttgactgtaacaaagttttacatggaagagcagctggccaaagaatacacaatcaacatgttcaagaaatttcaggacgagttgaaagcaacgatgtattgtgatggtatgccaactaaagttgatggacaatttgtcacctttgtggtgaaagaatgctcatacatggaagatggaaaggagaaggagggaaggaattatgaggtttacttttgcaagcaagagcttgagatgtttgagattccaataaggtttgttcttgatcgctggaaaagagactataagaaattgcatgctgatgcgctttgcaaaaatgatgaaatgctacctgatgtgctacctgatggcataatcgagcgtcatgatatcttgtttacacagtttcgtcaggtgcttaatctagggttcatatccgagggtaggtaccttgtagctctgaagttactgagacaagcagaaaagactcttctggatgatggagatagaggcaggcaggcagggcttctctcgtttgaggctgaagcacctgaaaatgatgaagggatttttagtcctgagttttcagagggtgtaaagaattctcagtcaacaaatgcaaagcgtcgaggtcgtccaacaaagaaactaattgaatctgattctgataccgtattacggccaaataaagagcaggattttctacggtcatcttttgtcactgatgagtctaatatgattcaaggggcaccctcagcctcacaccttgaaagtcctcacttgggagttgatttgatggaaggaatacctccaaacctttcatttaatcatcattttggtatggatattaatcaccaacatcaagtgcccaaccaaccgaggatgctcccaagcaattttctgcaggcccaggcagattcccagggttatggaaatcaatgggctttcccaacattgcaggtcttcctacagatgtacatatataaggaaatgacatatatggctatattccaggataattcaatgctaagaactgcagcccgaagaggagtataccatgactcctccggcgctcgtaattactaccttaactaa
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| Protein seq | MVEGLPAELPIVDVAARLDGKSSELPENGALLKGAEESQDLGGNPVAELTLHEGKEVILVDDNDSEQEDGGSGKVDENAPRVGLRFKTYDDALKYYKQYAADSGFSAIILKSSYLKSGVCRRLVLGCSRAGRGRANACYLSRESTKINCPARISLKLRQDRWLHIDDAKLDHNHPPNQSSVSHMNCYKKLTDAKNEETASRSKGRRNVPIENLKAHAEFKTIKKALKKVTYGSLKASEFEADWKKIILEHGLGENECLKLQADEESSHRTPLTVTKFYMEEQLAKEYTINMFKKFQDELKATMYCDGMPTKVDGQFVTFVVKECSYMEDGKEKEGRNYEVYFCKQELEMFEIPIRFVLDRWKRDYKKLHADALCKNDEMLPDVLPDGIIERHDILFTQFRQVLNLGFISEGRYLVALKLLRQAEKTLLDDGDRGRQAGLLSFEAEAPENDEGIFSPEFSEGVKNSQSTNAKRRGRPTKKLIESDSDTVLRPNKEQDFLRSSFVTDESNMIQGAPSASHLESPHLGVDLMEGIPPNLSFNHHFGMDINHQHQVPNQPRMLPSNFLQAQADSQGYGNQWAFPTLQVFLQMYIYKEMTYMAIFQDNSMLRTAARRGVYHDSSGARNYYLN |
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| Function | Protein FAR1-RELATED SEQUENCE 6 [UniProtKB/Swiss-Prot:Q9SSQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024160 | OsLima_02g0024160.01 | Chr02 | 25225963 | 25231185 | + | NAM | ||
| CDS seq | atggtagaggggttgccggcggagttgccaatcgtggacgtggccgctcgtttggatggcaagagctcggagctgccagagaatggtgcattgctgaagggtgctgaggaatcccaggatttgggaggtaatcccgtggcggagttgacgttgcacgaaggcaaagaggtgatcctcgtcgatgacaatgatagtgagcaggaagacggtgggagtggcaaggtggatgagaatgcgccccgggtcggattgagattcaaaacttatgatgacgcgctgaagtactataagcaatatgccgcggattctggcttttcagcaatcattctgaagtcgtcctacttgaagtcaggggtgtgccggaggttggtgcttggatgcagtcgagctggaagagggagggcaaacgcatgctatctgtctagagaatcaacgaagataaattgtccagctaggatttcgttgaagctaaggcaagatagatggcttcacattgatgacgctaagcttgatcacaaccatccaccgaaccaatcctcggtgtcacatatgaactgttataagaaattgacagatgccaagaatgaggaaactgcttcaagatcaaaagggcgtaggaatgttcccatagagaacttgaaagcacatgcagaattcaaaacaattaagaaagcactgaagaaagtaacctatgggtcactgaaagcctcagagtttgaagctgattggaagaagattattctggagcatggacttggagaaaatgaatgccttaagttgcaagctgatgaagaatcctcccataggactcctttgactgtaacaaagttttacatggaagagcagctggccaaagaatacacaatcaacatgttcaagaaatttcaggacgagttgaaagcaacgatgtattgtgatggtatgccaactaaagttgatggacaatttgtcacctttgtggtgaaagaatgctcatacatggaagatggaaaggagaaggagggaaggaattatgaggtttacttttgcaagcaagagcttgagatgtttgagattccaataaggtttgttcttgatcgctggaaaagagactataagaaattgcatgctgatgcgctttgcaaaaatgatgaaatgctacctgatgtgctacctgatggcataatcgagcgtcatgatatcttgtttacacagtttcgtcaggtgcttaatctagggttcatatccgagggtaggtaccttgtagctctgaagttactgagacaagcagaaaagactcttctggatgatggagatagaggcaggcaggcagggcttctctcgtttgaggctgaagcacctgaaaatgatgaagggatttttagtcctgagttttcagagggtgtaaagaattctcagtcaacaaatgcaaagcgtcgaggtcgtccaacaaagaaactaattgaatctgattctgataccgtattacggccaaataaagagcaggattttctacggtcatcttttgtcactgatgagtctaatatgattcaaggggcaccctcagcctcacaccttgaaagtcctcacttgggagttgatttgatggaaggaatacctccaaacctttcatttaatcatcattttggtatggatattaatcaccaacatcaagtgcccaaccaaccgaggatgctcccaagcaattttctgcaggcccaggcagattcccagggttatggaaatcaatgggctttcccaacattgcaggtcttcctacagatgtacatatataaggaaatgacatatatggctatattccaggataattcaatgctaagaactgcagcccgaagaggagtataccatgactcctccggcgctcgtaattactaccttaactaa
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| Protein seq | MVEGLPAELPIVDVAARLDGKSSELPENGALLKGAEESQDLGGNPVAELTLHEGKEVILVDDNDSEQEDGGSGKVDENAPRVGLRFKTYDDALKYYKQYAADSGFSAIILKSSYLKSGVCRRLVLGCSRAGRGRANACYLSRESTKINCPARISLKLRQDRWLHIDDAKLDHNHPPNQSSVSHMNCYKKLTDAKNEETASRSKGRRNVPIENLKAHAEFKTIKKALKKVTYGSLKASEFEADWKKIILEHGLGENECLKLQADEESSHRTPLTVTKFYMEEQLAKEYTINMFKKFQDELKATMYCDGMPTKVDGQFVTFVVKECSYMEDGKEKEGRNYEVYFCKQELEMFEIPIRFVLDRWKRDYKKLHADALCKNDEMLPDVLPDGIIERHDILFTQFRQVLNLGFISEGRYLVALKLLRQAEKTLLDDGDRGRQAGLLSFEAEAPENDEGIFSPEFSEGVKNSQSTNAKRRGRPTKKLIESDSDTVLRPNKEQDFLRSSFVTDESNMIQGAPSASHLESPHLGVDLMEGIPPNLSFNHHFGMDINHQHQVPNQPRMLPSNFLQAQADSQGYGNQWAFPTLQVFLQMYIYKEMTYMAIFQDNSMLRTAARRGVYHDSSGARNYYLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.228835 | 0.259591 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0608100 | RBH | 3.085906 | 2.241575 | 4.063023 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39520 | RBH | 2.184612 | 1.500628 | 1.041187 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0608100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024360 | RBH | 1.286153 | 11.606684 | 6.227588 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024500 | RBH | 0.184442 | 2.043710 | 1.444056 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024500 | RBH | 1.888235 | 5.484838 | 8.842058 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024140 | RBH | 0.402263 | 0.155663 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024040 | RBH | 9.060873 | 14.220444 | 18.491680 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023910 | RBH | 0.907119 | 0.547965 | 2.396537 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0417800 | RBH | 7.332655 | 13.5693935 | 12.7454125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016800 | SBH | 0.552294 | 0.447153 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024120 | RBH | 1.056431 | 2.520686 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024430 | RBH | 8.471700 | 14.301038 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024180 | RBH | 1.353989 | 1.137007 | 2.499240 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023880 | RBH | 0.469959 | 2.694255 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024310 | RBH | 0.574341 | 2.888593 | 3.744195 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024160 | RBH | 1.626925 | 9.549628 | 9.543687 |
