Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0024090 | OGI:02067790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:25155684-25159342 | ||||||||
| Gene Symbol | OsPP2C21, PP2C21, OsPP31, OsPP2C22, PP2C22, OsPP33 | ||||||||||
| DNA seq | gaaatgagtattactacatcgaccaaaatcttcagtaatccagagtacaatgataaaggtgcgttaaacgaatccaagtgactctcaggcacaaatgtaacggactgtctcctatgctaatggacttatggcatcatactacgtacttagtggcatcccatcaacgtcgccttggacaaaaataggactctctggaccttcttttcctgatctaaccccaaaactcccagctagctaagatccttgcaagaactaaggtgcactaaattggagggccagtgattagtcattgtcattgttgatgtcaagtttttcatcaccgccctcggggttgtgttgatgttcatccctggcactggcaacttcatcggggtcctcctcaatgggcttgaacttaaccagtatggcagtcgcgttgtcatttgagtgcaagcaatgaccaacaagcttctcacaagtctcgcgtagattttcctccccctgtgttggttaacatgcatacgtcaaggcacaggccaaagggcataataacaattctagcaacaaatgaatgaacagcgaaaaacatcctacgatcttcatatgtagactttagatttcaatctcttgataacaaaacgaagcagatccatgcacatgtgttcagaactggagtaaactttcatttatttaatttaagagtgcatgcatgaaaggaacttctagagaggatgcgttttttagacaaatggatcatatcaacccggcttttggtggagtccaggataacaaggttcttacaaccaactaaataagcatataactactacacttcgtgttctcatcacagaaccagcctgctaacataatttcaaaacaaaagccatgtgtttttttaatgcattacttcatgacatgtagagaaaaataggaaggactcaccggacgtaattcctgacgcacaaactgaacaacattgttatttctcatgccatccctgaaagagAaaaaaaatgtatttaagtttactatgtgaatatgaataaaactgtagaagaaacaaaaggaagagacatagcattgccaatgggaaacgtatatcagattgtgataatatatggtagattgctgtcatttatcaatattaacactgatacatcttagcacaattcctacaggtgtaaatgtttcatttagtgagatggttcttgaagaatgatcttgcagtataagtcagatatataaggtgaccagtggtcgttggagtcatttccaacttattaagcctgtcagataccaaaccatcaaattaaataattgtctgaatactataaaaccccagctagtgcagggaatgacagatgtctctcttttcagtagattcagcctctccaaggacataacatttaactcaaaataagaattcaaaaatcttcaccacgtaaaaacattcataactacacatggtggtgaactagataatataccagtcaggtcacatccaattttaattaaagcaaatgtacaaacccttgtggaaaaaacaatactgtcttagaagcaagttaattgtcattggagtggatatattctgcaagagatttatttaatcaggagctagcataaaacaacaaataacctttactaattttatagcagaggacctaccagacaccatcacttgctatgacaagaaattcagtatcatcagttatgttttcctaacaaaaataaggacatctgatcagaccaagaaaacaaatatatagtcatctaaaatggcatagttacacttacgacgcgaatgtcaggaacacatgtcaccatttgctgtgaaggaggcatatttctgttctgcttatatgcaaaatcacctgcaatggtagtaatgaaaatgtcaattacaatgctacagattttgtacaaacagccaaaagaaaataagataaaattataccaatcgctctggacgtggctaacattcctagaattcttcgcaaaaatacatgtcctcctgctctttgaattctttcgcgttcagcttcatggtgtggtttgtgatcaaaggataaactaattgcctatggacacaacagaaaaacaaaaagataataattaggcaccaatttattgcatttggcaagagagaagatccaggcaataagacatttcacaagaaacaagtcacgcacctgaccattctttgaaagcacgcaacgagaatcaccaacattcccaacaatgatctgatttcctctaatgattaccacacatgctgtgctaccttcatatgacggcggaacgtaatcctgagggggcaacaatccagctgaagtgtaaaactaacaattcaatagttccacgaaataaaaaaatctaaaaaggtgtgcaatgccaccagagaaaaaaaatgatgtccatacttcataaaagaagggaacaaatgtaagaaagacatgatgagtccaacaaagtgacatatcaaacaataccatagtttgggcagtaggataacaactaaagtacaacaagaacttaacaagcttttggattctgactccataaacattaaacaagtgcttgatatgatgagtgtgtatgagaaatatatcactcggaactccacatcatatcttgagagaaaaatatggaagccatatcacacattccttcaagatacttcttgcagataagaatatgtgcactagataactagaaataagatcatgattaactttaatgcagttggatgtgtaaagaacaaccacgaagtttatatatcacctctgtgaaatggtggagattagcacaaatgttagtgagacaattgcgattagcacagggattaagtgactccctccattcatttgatcgttgcaaatcatcatcaagtctgcaattaagaaggcaggtgattacatattttcatgtttgctaatccagcaaatggtactatattttcaagaaaataattgcaattatgaacacttgtccttccgttttccactattgagaaacatgagtgcacaaaatatgtagagtacatgaaataattatgtagaaaataacctgaagcatacagacgtaattgcattgggcagattgttgatatagtctacatcctcaagaagcatagtatgaaatcgttttgcacagtacattgctacttcagctcctgaatagaaaaaggtaaaaaaactcagcatgactgtacagatagagaacgaaggattgaaggatgaatcaactgttattatgttcctaataggaaacgccgtcctttctttatagaggattgtgacttctatgatattttaaccaacgcgtgaagtggtctaacagatgaattgtttgacatttgttagaaaagatgagaatgaagatcaaacctccatggccatcataaacaccaaagaatgacgtggtcgcatctagatctagttcaactgcaagctagataatacgaaaggtacaaatcaagcttgttgtttgatcacatttacttacaggtaaacaccttatggccataaaattggttaaaagagtgcaagattactcactgcatcttccatgtgcgggcgaaatccttgcgtagtatatgaggcatacttaactctgtgattctctccttcactagatgatggtgattgttctagtggacggctgggagatgcacccat
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| CDS seq | atgggtgcatctcccagccgtccactagaacaatcaccatcatctagtgaaggagagaatcacagagttaagtatgcctcatatactacgcaaggatttcgcccgcacatggaagatgcacttgcagttgaactagatctagatgcgaccacgtcattctttggtgtttatgatggccatggaggagctgaagtagcaatgtactgtgcaaaacgatttcatactatgcttcttgaggatgtagactatatcaacaatctgcccaatgcaattacgtctgtatgcttcagacttgatgatgatttgcaacgatcaaatgaatggagggagtcacttaatccctgtgctaatcgcaattgtctcactaacatttgtgctaatctccaccatttcacagaggattacgttccgccgtcatatgaaggtagcacagcatgtgtggtaatcattagaggaaatcagatcattgttgggaatgttggtgattctcgttgcgtgctttcaaagaatggtcaggcaattagtttatcctttgatcacaaaccacaccatgaagctgaacgcgaaagaattcaaagagcaggaggacatgtatttttgcgaagaattctaggaatgttagccacgtccagagcgattggtgattttgcatataagcagaacagaaatatgcctccttcacagcaaatggtgacatgtgttcctgacattcgcgtcgaaaacataactgatgatactgaatttcttgtcatagcaagtgatggtgtctgggatggcatgagaaataacaatgttgttcagtttgtgcgtcaggaattacgtccgggggaggaaaatctacgcgagacttgtgagaagcttgttggtcattgcttgcactcaaatgacaacgcgactgccatactggttaagttcaagcccattgaggaggaccccgatgaagttgccagtgccagggatgaacatcaacacaaccccgagggcggtgatgaaaaacttgacatcaacaatgacaatgactaa
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| Protein seq | MGASPSRPLEQSPSSSEGENHRVKYASYTTQGFRPHMEDALAVELDLDATTSFFGVYDGHGGAEVAMYCAKRFHTMLLEDVDYINNLPNAITSVCFRLDDDLQRSNEWRESLNPCANRNCLTNICANLHHFTEDYVPPSYEGSTACVVIIRGNQIIVGNVGDSRCVLSKNGQAISLSFDHKPHHEAERERIQRAGGHVFLRRILGMLATSRAIGDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWDGMRNNNVVQFVRQELRPGEENLRETCEKLVGHCLHSNDNATAILVKFKPIEEDPDEVASARDEHQHNPEGGDEKLDINNDND |
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| Function | Probable protein phosphatase 2C 21 [UniProtKB/Swiss-Prot:A3A8W2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024090 | OsLima_02g0024090.01 | Chr02 | 25155684 | 25159342 | - | NAM | ||
| CDS seq | atgggtgcatctcccagccgtccactagaacaatcaccatcatctagtgaaggagagaatcacagagttaagtatgcctcatatactacgcaaggatttcgcccgcacatggaagatgcacttgcagttgaactagatctagatgcgaccacgtcattctttggtgtttatgatggccatggaggagctgaagtagcaatgtactgtgcaaaacgatttcatactatgcttcttgaggatgtagactatatcaacaatctgcccaatgcaattacgtctgtatgcttcagacttgatgatgatttgcaacgatcaaatgaatggagggagtcacttaatccctgtgctaatcgcaattgtctcactaacatttgtgctaatctccaccatttcacagaggattacgttccgccgtcatatgaaggtagcacagcatgtgtggtaatcattagaggaaatcagatcattgttgggaatgttggtgattctcgttgcgtgctttcaaagaatggtcaggcaattagtttatcctttgatcacaaaccacaccatgaagctgaacgcgaaagaattcaaagagcaggaggacatgtatttttgcgaagaattctaggaatgttagccacgtccagagcgattggtgattttgcatataagcagaacagaaatatgcctccttcacagcaaatggtgacatgtgttcctgacattcgcgtcgaaaacataactgatgatactgaatttcttgtcatagcaagtgatggtgtctgggatggcatgagaaataacaatgttgttcagtttgtgcgtcaggaattacgtccgggggaggaaaatctacgcgagacttgtgagaagcttgttggtcattgcttgcactcaaatgacaacgcgactgccatactggttaagttcaagcccattgaggaggaccccgatgaagttgccagtgccagggatgaacatcaacacaaccccgagggcggtgatgaaaaacttgacatcaacaatgacaatgactaa
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| Protein seq | MGASPSRPLEQSPSSSEGENHRVKYASYTTQGFRPHMEDALAVELDLDATTSFFGVYDGHGGAEVAMYCAKRFHTMLLEDVDYINNLPNAITSVCFRLDDDLQRSNEWRESLNPCANRNCLTNICANLHHFTEDYVPPSYEGSTACVVIIRGNQIIVGNVGDSRCVLSKNGQAISLSFDHKPHHEAERERIQRAGGHVFLRRILGMLATSRAIGDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWDGMRNNNVVQFVRQELRPGEENLRETCEKLVGHCLHSNDNATAILVKFKPIEEDPDEVASARDEHQHNPEGGDEKLDINNDND
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.063482 | 0.093110 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0606900 | RBH | 0.467448 | 0.876293 | 0.883684 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39410 | SBH | 0.387721 | 0.582439 | 0.224799 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0606900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024270 | RBH | 0.0 | 2.006220 | 3.802380 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024420 | RBH | 0.0 | 1.180429 | 0.548809 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024420 | RBH | 0.136729 | 0.0 | 2.098514 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024060 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0023980 | RBH | 0.0 | 0.000000 | 5.154609 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0388700 | SBH | 1.2371055 | 2.943191 | 11.206985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023820 | RBH | 0.000000 | 0.0 | 1.146600 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0416600 | SBH | 1.710069 | 2.458518 | 10.315714 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018550 | RBH | 0.025952 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024040 | RBH | 0.000000 | 2.814427 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024350 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024120 | RBH | 0.0 | 0.148118 | 0.118819 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023810 | RBH | 0.0 | 3.283235 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024230 | RBH | 0.000000 | 2.037720 | 1.358230 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024100 | RBH | 0.118850 | 0.0 | 1.244394 |
