Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0021180 | OGI:02060690 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:22661467-22664808 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggatctgaaattttgtatgaaccatcaccattatttctgtctgaatacagagattagaccatttacccatctataacctgacatctttatacgctcttaatgagcatctaaaatacagatcgccacgacatggtacatcagcagaagccttatttcttcgttttacaaggccggcaggttgtgcttggagacccctcggcctctacttggggctcagtggttactctgactgatgtctcttcgttttcttcagcttgatgccttggaccctcactaccttgttgcaatgtctgatcctcctgtcgcgtgttctcgtcaatgcggccctcctgatactgtacatccaaagagctgttctcttcaacggtctgtgcttccaaatccactggatcaatgctggcggttttgggggatggaaggagggatactcgacaaagagggcaagtggtgtttgtcgagagccagtggtcgatgcaatcgatgtggaaggtatggccacaaggaggtattctctggagccgctcatccggttgatagtctgctaagcagacagagcatctgtcaagaatgattgtatgttcagaacaaaagaaccaattcagggtaaaatgccagtactcagaagacagaaaacaactattctagtttaaccaacacacaatcttaactcagctatgctatggacatatattccagttgacaaatgtgaaataagaaagtctcaacgaaagcctttaagccatatggtaattgcaaataatatactattgcaaataatatactatctaccgtgttaaaggtaccatgccaattgtagtggtttgctactgatccatagtttctctgagcaacagagaaaacaattctacactgatcaaataccacaataagggtcaaacatttgagtaaattatctgtacaaaattcaacattattctggaacagactaactctgagtgacctacaggttgctccatatgcataagatccgtaggatgactcgcatgtgattttctgtattcaagtgctttcttctttctgccctttcctccagactaattctagcaatttaccaaatttgaaaaccgtgattgttaaaaaatattagcacttgggctggatcttgccttcctgtaattcatgtacaattctttggtattttggggatgagggttgggggtaatattggaaaccttactaatgtatgttctttcagttttttttttgagtgcatattagcccatgtgaacctctgaaagtctgaatcaacaggcgattttgatgtacattcaataagttgcaatacatatgttaccgtgtccaaccagtgcactgtttatgcgtatccattatgatatgaccatataaccacataactattgacaaaataaaatccttggcaataattcggcaaatgataatatgcaaaagaatttcacctaagctcacgaatactctatggcatctcttctaaagaaagtccatcagaactttattcaagcctaattttacacattactaggattttacacattgttatggaaagctggaagcaatacacccatcaattaagcttaccgaccttgcaccaattttggagaatttccaaatattggagtatttgaataactttgttttgtcgaatatattttctaactgcacaagtggcacacatccactataatgttagcaattaactaactgcatatatggttcagggcctcagggtattgatatgcttgctattgcccttcggaaacattctctaaatgtagctcaaggctctaatttagaagcacttccattcattactgaactagttatcgagatattggtggtccagacccaacggaaaacctacatcgaagtgctttcatgattttggagcaataaaaggtgcaacacatattaatggaagtggttatcaattgagaagatttatggtctagcacaacagtatatgaactgcattgaagagagattaggagtagatcactgactgtgtttccctgatcaagaagctctccttgaagaccacaacaggcaacatttcccgcatctccttctttatgccgcactccaactacacatatattcaagacaatacagatcaaacaacaaaatccccatacactaacatatcctgaaaagccaagttactcaacagaagggcgcggaggctagcttactctggggttatctccccgtatcaagttattagtcctcatgcgcaaggactgccagtttgctctgcgccgtcgcaagtagaacaagtagaagaagagaagcaagacgaacgtgaagaaaaccggcacggagaagatgaaggcttggtatagcttaagctcaggcgatgcggccgagcagtaatcgggcgggtctggggaggtacaagacatcaccaaacaagaacctccctcccttccaccaagaaccaacgaatggtcgaccgaattatcgaaaaccctaaacactcacaagatctcttatctataacactgatgagctatagtgcttattaccaaattgcatgggcttaaccaccgcaccttgattccctatgattgaattacaaaatgcattgcaagaattaagtgattgatgaccgcttgcgaagagatggaccttagatactactactactactttgatagtgatgtgcacgccaccaaacgaaaaatgagcaaactgctatgggaggtagagtagggggaaagtgcagcttctttgtttgggtttggtttccctaagtcaaagatagctgaaaactaaaactcaaatcaatagcgccaatcgaaagcaaaacggggattcaggatttcatggtcaaccacgcgagaataagcagcaagcagcagcagcctcctccaagctagtacaacaacaaacacacgacaacacgagccctagtctccctacacgtaatggtggtaaaaccacaccaaattccccgcgaagatcgtgtgggtggaccgagggagagagatcccagccgctaggatccacaattccacagcggtgtgcaagaaccctaaccccccgcaccgcaaccgaaacagcgaggtaagggcaacagctataatatcacacgcgacggggattccagcacaaagtcagatcgcgcgatccggaggccgccggccggagcgggggggctaccaccacgccggcggagaggagttccgtggcgggggtcagggcaagagcagagaggagggggttttgggaatgcgcggcggcggcggccggatcggggcgggcggtggggacggagttgggctcgcgccgaggagtgtgcagcagcagcaaatgatgggaaaaaaagaagcggctttcacacgc
More
|
||||||||||
| CDS seq | atgtcttgtacctccccagacccgcccgattactgctcggccgcatcgcctgagcttaagctataccaagccttcatcttctccgtgccggttttcttcacgttcgtcttgcttctcttcttctacttgttctacttgcgacggcgcagagcaaactggcagtccttgcgcatgaggactaataacttgatacggggagataaccccagattggagtgcggcataaagaaggagatgcgggaaatgttgcctgttgtggtcttcaaggagagcttcttgatcagggaaacacaatgctctgtctgcttagcagactatcaaccggatgagcggctccagagaatacctccttgtggccataccttccacatcgattgcatcgaccactggctctcgacaaacaccacttgccctctttgtcgagtatccctccttccatcccccaaaaccgccagcattgatccagtggatttggaagcacagaccgttgaagagaacagctctttggatgtacagtatcaggagggccgcattgacgagaacacgcgacaggaggatcagacattgcaacaaggtagtgagggtccaaggcatcaagctgaagaaaacgaagagacatcagtcagagtaaccactgagccccaagtagaggccgaggggtctccaagcacaacctgccggccttgtaaaacgaagaaataa
More
|
||||||||||
| Protein seq | MSCTSPDPPDYCSAASPELKLYQAFIFSVPVFFTFVLLLFFYLFYLRRRRANWQSLRMRTNNLIRGDNPRLECGIKKEMREMLPVVVFKESFLIRETQCSVCLADYQPDERLQRIPPCGHTFHIDCIDHWLSTNTTCPLCRVSLLPSPKTASIDPVDLEAQTVEENSSLDVQYQEGRIDENTRQEDQTLQQGSEGPRHQAEENEETSVRVTTEPQVEAEGSPSTTCRPCKTKK |
||||||||||
| Function | RING-H2 finger protein ATL7 [UniProtKB/Swiss-Prot:Q9SN28] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0021180 | OsLima_02g0021180.01 | Chr02 | 22661467 | 22664808 | - | NAM | ||
| CDS seq | atgtcttgtacctccccagacccgcccgattactgctcggccgcatcgcctgagcttaagctataccaagccttcatcttctccgtgccggttttcttcacgttcgtcttgcttctcttcttctacttgttctacttgcgacggcgcagagcaaactggcagtccttgcgcatgaggactaataacttgatacggggagataaccccagattggagtgcggcataaagaaggagatgcgggaaatgttgcctgttgtggtcttcaaggagagcttcttgatcagggaaacacaatgctctgtctgcttagcagactatcaaccggatgagcggctccagagaatacctccttgtggccataccttccacatcgattgcatcgaccactggctctcgacaaacaccacttgccctctttgtcgagtatccctccttccatcccccaaaaccgccagcattgatccagtggatttggaagcacagaccgttgaagagaacagctctttggatgtacagtatcaggagggccgcattgacgagaacacgcgacaggaggatcagacattgcaacaaggtagtgagggtccaaggcatcaagctgaagaaaacgaagagacatcagtcagagtaaccactgagccccaagtagaggccgaggggtctccaagcacaacctgccggccttgtaaaacgaagaaataa
More
|
|||||||
| Protein seq | MSCTSPDPPDYCSAASPELKLYQAFIFSVPVFFTFVLLLFFYLFYLRRRRANWQSLRMRTNNLIRGDNPRLECGIKKEMREMLPVVVFKESFLIRETQCSVCLADYQPDERLQRIPPCGHTFHIDCIDHWLSTNTTCPLCRVSLLPSPKTASIDPVDLEAQTVEENSSLDVQYQEGRIDENTRQEDQTLQQGSEGPRHQAEENEETSVRVTTEPQVEAEGSPSTTCRPCKTKK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.069268 | 0.285948 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0557300 | RBH | 1.137354 | 0.606657 | 5.431591 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35144 | RBH | 0.741448 | 0.393115 | 1.347098 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0557300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021240 | RBH | 0.412185 | 9.766227 | 5.140218 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021320 | RBH | 0.000000 | 0.570809 | 2.373598 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021310 | RBH | 0.694245 | 8.130692 | 11.863291 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021050 | RBH | 0.277217 | 0.313494 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020970 | RBH | 2.326353 | 10.580046 | 9.373094 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0347700 | RBH | 3.962876 | 12.8557795 | 16.122941 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020710 | RBH | 0.134654 | 0.642620 | 0.512736 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0373800 | RBH | 2.997009 | 7.477186 | 13.854054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013080 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020920 | RBH | 0.184492 | 6.730292 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021370 | RBH | 4.413399 | 22.075235 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021070 | RBH | 0.280512 | 0.315066 | 0.540057 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020900 | RBH | 0.244789 | 3.964251 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021330 | RBH | 0.498316 | 2.478897 | 1.564185 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021080 | RBH | 0.958761 | 9.886488 | 4.533134 |
