Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0020590 | OGI:02059210 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:21957643-21961082 | ||||||||
| Gene Symbol | OsbHLH146, bHLH146, OsZOU-2, OsZOU2, ZOU-2, ZOU2 | ||||||||||
| DNA seq | atggcgcaagagggcacgagcagcaacgcacccccggctgctgcctccatgggctccggcgacggcgacaacaaggagggcaccggcgagtccggcaacaaccagctgctgcttccggcgatcgccgccagcgccgacaagggtaagggcgtcgtcgccgggaccgggaacgtcgacgccaaaggtaagaccacggcgatggcgccggcggccagcagcacgaatgctcctaacaaccagggcagcggcggcggcggcggcgggcgcagccgcgagaggatgcacatcttcgccgagcgcgagcggcggaggaagatcaagaacatgttcaccgacctgcgcgacctcgtccccagcctcaccaaaaaaaaaaaaaaggtttaaactcgcagtagctacatcgatcgtcagtgcggcgacgtgatggatgagatgatgtttcaggcggacaaggcgaccatcgtcggggaggccatcagcttcatcaggagcctggaggagacggtggccgacctggagcgccgcaagagggagagggacagcctcgccgcgcggtgcgcacgcctcggcctcggcgggtcctcctcctcgtccgcgccaccgccaccgccaccccccgccgccgccgacgacaccgccgccgtcatgccgcccgcgccggcggtgccgccacctgatgccgccgctgtcaccgcggggccagagcctgcgccggcgccggcgccggggacgttgatggtgtggtcggggccgagcgtggtgctgaacctgtgcggcggcgaccaggccttcatcaacgtgtccgtggcgaggcgccccggcgtgctcaccatgatcgtggacgtgctggagaggcactccatcgacgtcgtcacggcgcagatcgcgtccgaccagtcccggtccctgttcaccatccacaccagcgtgagtattcctctcccctcctgttttttcgggcgctttttttttttggtccaaacatgtttagttttcaaaaaacttgcaacggtaggaaaaatagaatttctttgaggtactggcctacggcccgggcgttgcaacggaaaacaaaattgagtttctagcttattaaatcgattaatcatcacatatttagtctaagaaatactctgatttttcttgttaaacaagtatatatgtgattttgaaatttggggggatgaaatagcgaaatggaagagggcttgttgaaaagtgatgtaatagtatagaatgtgtgaccagatgttagtggtatgggtggtgtgagaatagacaccaccactactaacattcaggatttacaaaaccgtgcagatatcgcggttatcatgtgcggtaaccttctcagtttttaaaaccatggtatagctcgcggtaatcacacggttttcacgaaaccgtggggtggcggtaaccttacccaaaacggtttggtgaaccctgttaacattttaagtagtatagatatgtattggatatatatatcttagttttgtcgtggtgcacgcgtacctttgtagggaccatcctcatgtgattggtatatttctagaacattcgctaacatattcaataaagtatatcaccttaagtacgtgtggaattttcgcgtacctttgtagggaccatcctcaaacgattggtacatttccggaacatttgctaacatattcaataaagcatatcaccttaagtacgtgtggaattttcacgtacctttatagggaccatcgtcatgcaattggtggattttcagaacatttgctaacatcttcaataaaacatatcaccttaagtatgtgtggaattgtcgtgtacctttgtagggaccatcctcatgtgattggtggatttccggaacatttgctaacatcttcaataaagcatatcaccttaactaaagtatagagcccataaaaacttgctttgttgtgtggtgtcatgtggtgcgcatctttgtatggatcatcctcttgtgagagttagaactttgtcgtactaggacttattctagctactctagcgtacaccactagtgcgtaacggtctagccataattaattaacagagccggtacaaaatttgctttgtcgtggagcgttcgtccaaccctaattgaagtgtcctatgtatctttgtatagagcattctcttatcggagttagaacttatcgtgcaatctattcaatagcatatactctctccggtttcattttaattaacgttttaaacaaggttatgattaaacttttataactttgactatcaataactttaaaaatacttagtataaagaaactagaacaacatatatagattggtctttcaaaacactataataaaagtaaacatatatttatttatggcaaaacacttaaattttgcaaaattataatggcatggttccaattttccctttatttattatatatattataatagaaaaataaagtcaaacatatattttgtagaccgtgtcattgtccaaaacatcaattaaaatgaaatcagaggaagcaccacaagtgcgtaacggtctagacacaattaatgaatataatccgtacaaaccagctttgtcgtgcggtgcgcatgtatgatgttagttgttgtctacatagtgcgtatatgtaccatcctctagtgggagttagaacttatcatgcgataacttgttctggctagctattttgatggtgtataccgccctcgtaatggtttagtaaccagaaacaattatggcttgtgcaatgtaccatcgagccattttattcctatttaagagaaaaaaaatgatatttaatagtcgaattattgaaaaaacaccttatatataaaacttgctataataggaatggctaggagtacttatcacttggtaacaccatttaaaccagtgaaaaaatctcgaaccaaaacataatggctttcttttatggtaaacaaaagagggagtacgaagcatggggtatgatttacacagttcgttcaaaacgcaatctagctaattccctttactttgttaatcgtgttttctgttttgttttgttggatggttacgcttagttttacatgttcaacttaaaatattagccagcttaaaattcctggaaaagtagtgaaaagcagctgaatttgatatccttattttacattgcaattcttgaatcctaacaagtgcatcgatctactggcctgttctatatatatgtacaggtggacagagagcgtggtatgttcatggacactgcgacggccgaagagatctaccaactggctgtctcggagataatggtatggctccacagcgagtgatatgatcatcgtcatggtgcaactagcaaaaggggatttgagctgttaactctcagttaatttgagcgttataatacatcagacttagcttcatgtggtgcgtgtcgcgtttgcagtga
More
|
||||||||||
| CDS seq | atggcgcaagagggcacgagcagcaacgcacccccggctgctgcctccatgggctccggcgacggcgacaacaaggagggcaccggcgagtccggcaacaaccagctgctgcttccggcgatcgccgccagcgccgacaagggtaagggcgtcgtcgccgggaccgggaacgtcgacgccaaaggtaagaccacggcgatggcgccggcggccagcagcacgaatgctcctaacaaccagggcagcggcggcggcggcggcgggcgcagccgcgagaggatgcacatcttcgccgagcgcgagcggcggaggaagatcaagaacatgttcaccgacctgcgcgacctcgtccccagcctcaccaaaaaaaaaaaaaaggcggacaaggcgaccatcgtcggggaggccatcagcttcatcaggagcctggaggagacggtggccgacctggagcgccgcaagagggagagggacagcctcgccgcgcggtgcgcacgcctcggcctcggcgggtcctcctcctcgtccgcgccaccgccaccgccaccccccgccgccgccgacgacaccgccgccgtcatgccgcccgcgccggcggtgccgccacctgatgccgccgctgtcaccgcggggccagagcctgcgccggcgccggcgccggggacgttgatggtgtggtcggggccgagcgtggtgctgaacctgtgcggcggcgaccaggccttcatcaacgtgtccgtggcgaggcgccccggcgtgctcaccatgatcgtggacgtgctggagaggcactccatcgacgtcgtcacggcgcagatcgcgtccgaccagtcccggtccctgttcaccatccacaccagcgtggacagagagcgtggtatgttcatggacactgcgacggccgaagagatctaccaactggctgtctcggagataatgtga
More
|
||||||||||
| Protein seq | MAQEGTSSNAPPAAASMGSGDGDNKEGTGESGNNQLLLPAIAASADKGKGVVAGTGNVDAKGKTTAMAPAASSTNAPNNQGSGGGGGGRSRERMHIFAERERRRKIKNMFTDLRDLVPSLTKKKKKADKATIVGEAISFIRSLEETVADLERRKRERDSLAARCARLGLGGSSSSSAPPPPPPPAAADDTAAVMPPAPAVPPPDAAAVTAGPEPAPAPAPGTLMVWSGPSVVLNLCGGDQAFINVSVARRPGVLTMIVDVLERHSIDVVTAQIASDQSRSLFTIHTSVDRERGMFMDTATAEEIYQLAVSEIM |
||||||||||
| Function | Transcription factor bHLH95 [UniProtKB/Swiss-Prot:Q9FXA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0020590 | OsLima_02g0020590.01 | Chr02 | 21957643 | 21961082 | + | NAM | ||
| CDS seq | atggcgcaagagggcacgagcagcaacgcacccccggctgctgcctccatgggctccggcgacggcgacaacaaggagggcaccggcgagtccggcaacaaccagctgctgcttccggcgatcgccgccagcgccgacaagggtaagggcgtcgtcgccgggaccgggaacgtcgacgccaaaggtaagaccacggcgatggcgccggcggccagcagcacgaatgctcctaacaaccagggcagcggcggcggcggcggcgggcgcagccgcgagaggatgcacatcttcgccgagcgcgagcggcggaggaagatcaagaacatgttcaccgacctgcgcgacctcgtccccagcctcaccaaaaaaaaaaaaaaggcggacaaggcgaccatcgtcggggaggccatcagcttcatcaggagcctggaggagacggtggccgacctggagcgccgcaagagggagagggacagcctcgccgcgcggtgcgcacgcctcggcctcggcgggtcctcctcctcgtccgcgccaccgccaccgccaccccccgccgccgccgacgacaccgccgccgtcatgccgcccgcgccggcggtgccgccacctgatgccgccgctgtcaccgcggggccagagcctgcgccggcgccggcgccggggacgttgatggtgtggtcggggccgagcgtggtgctgaacctgtgcggcggcgaccaggccttcatcaacgtgtccgtggcgaggcgccccggcgtgctcaccatgatcgtggacgtgctggagaggcactccatcgacgtcgtcacggcgcagatcgcgtccgaccagtcccggtccctgttcaccatccacaccagcgtggacagagagcgtggtatgttcatggacactgcgacggccgaagagatctaccaactggctgtctcggagataatgtga
More
|
|||||||
| Protein seq | MAQEGTSSNAPPAAASMGSGDGDNKEGTGESGNNQLLLPAIAASADKGKGVVAGTGNVDAKGKTTAMAPAASSTNAPNNQGSGGGGGGRSRERMHIFAERERRRKIKNMFTDLRDLVPSLTKKKKKADKATIVGEAISFIRSLEETVADLERRKRERDSLAARCARLGLGGSSSSSAPPPPPPPAAADDTAAVMPPAPAVPPPDAAAVTAGPEPAPAPAPGTLMVWSGPSVVLNLCGGDQAFINVSVARRPGVLTMIVDVLERHSIDVVTAQIASDQSRSLFTIHTSVDRERGMFMDTATAEEIYQLAVSEIM
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0120500 | SBH | 0.117208 | 0.120199 | 1.876955 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34320 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0120500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020720 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020700 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020370 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0338600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0362100 | RBH | 0 | 0.0500775 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020460 | RBH | 0.0 | 0.0 | 0.0 |
