Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0020330 | OGI:02057830 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:21516312-21518055 | ||||||||
| Gene Symbol | PUB45, OsPUB45, P3IP1, OsP3IP1 | ||||||||||
| DNA seq | ctcctcatccttttctactccattccatctcctcctccacttccaccctcagctcgtcatcgccattgttgcaacaccaagtgtttgtggtcggaacgagatcgagcagcagccatccatggtgaggaaggagatgggcggcggcggcggcaggctcgcggcggagtaccagggcctggaggtaaaggtcccgacgttcttccggtgccccatctccctcgacgtcatgcgctcgccggtgagcctctgcaccggcgtcacctacgaccgcgcctccatccagcgctggatcgactccggcaacaccacctgccccgccaccatgctcccgctcccctccaccgacctcgtccccaacctcaccctccgccgcctcatcgcgctctgggcctccacggccgcgccgccgtcgtcgtcgtcgtcgccggtggcggcatcggctgttggccccacgcccgccgctgcggcggcggagctcctccgccgggttggggcgcccggggtggacccgtgcccggcgctgcgtaagctcgcggcgttcctgtccgacgacgacgtcgacgagttcgacaagaacgcgctcgcgagggccggtggcgcggcggagaccgtggcgtcggtgctcaggaggagggggaagggtggtgatgatggtgatgatgacgccggcggcgtggaggccgtcgaggcggccgtccgggtgctcgcggtgctcgccacgtcggactgcatcgaggaggagaacaggaggcgcgtcgccgccgtgctcgccgcggggggcgccgcgccgtcggtggcggcgtcgctggcgcgcgtgatgcggagcgggagcgggctcgaggcccgcgtcgacgcggcgaggctggtggagtcgctgctccgggacggcgcaggcgccgcgacgccgggggtgagggcggcgctcgccgagtcagaggagctggtcgcggagctgatccggctcgtcggccccgcggacgggaagggcagcctcgacgcgcgggccgtggacgccggcctctcctgcctcgccgccatcgtcgccgggacgcggcgcgcgcgcgccgagatggtccgtctcggcgccgtcccggccgccgtgcgcgtcctcgccacggaccagcgcggcgtcggcgggtcgcactcgcacgcccaggcgctgcgggtgctggaggcggcggtggggagcgcggaggggcgcgcggcggtgtgcgaggtggcggaggcggcgatcccggcggtggtgtcgaggatgatgaggtgcggcgggatgggcggcgcggaggcggcggtgtcggtgctgtgggcggtgtgccaccggtacagggaccggcgcgcggtggaggcggcggcggcgtccaagggcgggctgacgaagctcctcctgctgatgcagagcgggtgctcgccggcggcgaggcagatggcgtcggagctcctcaagatgttcaaggtgaacgccaagagctgcctcgccggctacgactccaagaccacccacatcatgcctttctaaaacccaaaaaaaaaaagagaaattcaaattctccattaatttgtcagcttcgttcgatagagaggaaaagaatcgagactggagaaagacaaacttgtacatggttagagaattttttcctagaaagaaacagatcaaatttcttctttgttctttggccaaaattcagtactgccatgatgtgttcaaacaaattcagtgttgcaagggaagggcagaatgactttc
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| CDS seq | atggtgaggaaggagatgggcggcggcggcggcaggctcgcggcggagtaccagggcctggaggtaaaggtcccgacgttcttccggtgccccatctccctcgacgtcatgcgctcgccggtgagcctctgcaccggcgtcacctacgaccgcgcctccatccagcgctggatcgactccggcaacaccacctgccccgccaccatgctcccgctcccctccaccgacctcgtccccaacctcaccctccgccgcctcatcgcgctctgggcctccacggccgcgccgccgtcgtcgtcgtcgtcgccggtggcggcatcggctgttggccccacgcccgccgctgcggcggcggagctcctccgccgggttggggcgcccggggtggacccgtgcccggcgctgcgtaagctcgcggcgttcctgtccgacgacgacgtcgacgagttcgacaagaacgcgctcgcgagggccggtggcgcggcggagaccgtggcgtcggtgctcaggaggagggggaagggtggtgatgatggtgatgatgacgccggcggcgtggaggccgtcgaggcggccgtccgggtgctcgcggtgctcgccacgtcggactgcatcgaggaggagaacaggaggcgcgtcgccgccgtgctcgccgcggggggcgccgcgccgtcggtggcggcgtcgctggcgcgcgtgatgcggagcgggagcgggctcgaggcccgcgtcgacgcggcgaggctggtggagtcgctgctccgggacggcgcaggcgccgcgacgccgggggtgagggcggcgctcgccgagtcagaggagctggtcgcggagctgatccggctcgtcggccccgcggacgggaagggcagcctcgacgcgcgggccgtggacgccggcctctcctgcctcgccgccatcgtcgccgggacgcggcgcgcgcgcgccgagatggtccgtctcggcgccgtcccggccgccgtgcgcgtcctcgccacggaccagcgcggcgtcggcgggtcgcactcgcacgcccaggcgctgcgggtgctggaggcggcggtggggagcgcggaggggcgcgcggcggtgtgcgaggtggcggaggcggcgatcccggcggtggtgtcgaggatgatgaggtgcggcgggatgggcggcgcggaggcggcggtgtcggtgctgtgggcggtgtgccaccggtacagggaccggcgcgcggtggaggcggcggcggcgtccaagggcgggctgacgaagctcctcctgctgatgcagagcgggtgctcgccggcggcgaggcagatggcgtcggagctcctcaagatgttcaaggtgaacgccaagagctgcctcgccggctacgactccaagaccacccacatcatgcctttctaa
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| Protein seq | MVRKEMGGGGGRLAAEYQGLEVKVPTFFRCPISLDVMRSPVSLCTGVTYDRASIQRWIDSGNTTCPATMLPLPSTDLVPNLTLRRLIALWASTAAPPSSSSSPVAASAVGPTPAAAAAELLRRVGAPGVDPCPALRKLAAFLSDDDVDEFDKNALARAGGAAETVASVLRRRGKGGDDGDDDAGGVEAVEAAVRVLAVLATSDCIEEENRRRVAAVLAAGGAAPSVAASLARVMRSGSGLEARVDAARLVESLLRDGAGAATPGVRAALAESEELVAELIRLVGPADGKGSLDARAVDAGLSCLAAIVAGTRRARAEMVRLGAVPAAVRVLATDQRGVGGSHSHAQALRVLEAAVGSAEGRAAVCEVAEAAIPAVVSRMMRCGGMGGAEAAVSVLWAVCHRYRDRRAVEAAAASKGGLTKLLLLMQSGCSPAARQMASELLKMFKVNAKSCLAGYDSKTTHIMPF |
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| Function | U-box domain-containing protein 27 [UniProtKB/Swiss-Prot:Q9FLF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0020330 | OsLima_02g0020330.01 | Chr02 | 21516312 | 21518055 | + | NAM | ||
| CDS seq | atggtgaggaaggagatgggcggcggcggcggcaggctcgcggcggagtaccagggcctggaggtaaaggtcccgacgttcttccggtgccccatctccctcgacgtcatgcgctcgccggtgagcctctgcaccggcgtcacctacgaccgcgcctccatccagcgctggatcgactccggcaacaccacctgccccgccaccatgctcccgctcccctccaccgacctcgtccccaacctcaccctccgccgcctcatcgcgctctgggcctccacggccgcgccgccgtcgtcgtcgtcgtcgccggtggcggcatcggctgttggccccacgcccgccgctgcggcggcggagctcctccgccgggttggggcgcccggggtggacccgtgcccggcgctgcgtaagctcgcggcgttcctgtccgacgacgacgtcgacgagttcgacaagaacgcgctcgcgagggccggtggcgcggcggagaccgtggcgtcggtgctcaggaggagggggaagggtggtgatgatggtgatgatgacgccggcggcgtggaggccgtcgaggcggccgtccgggtgctcgcggtgctcgccacgtcggactgcatcgaggaggagaacaggaggcgcgtcgccgccgtgctcgccgcggggggcgccgcgccgtcggtggcggcgtcgctggcgcgcgtgatgcggagcgggagcgggctcgaggcccgcgtcgacgcggcgaggctggtggagtcgctgctccgggacggcgcaggcgccgcgacgccgggggtgagggcggcgctcgccgagtcagaggagctggtcgcggagctgatccggctcgtcggccccgcggacgggaagggcagcctcgacgcgcgggccgtggacgccggcctctcctgcctcgccgccatcgtcgccgggacgcggcgcgcgcgcgccgagatggtccgtctcggcgccgtcccggccgccgtgcgcgtcctcgccacggaccagcgcggcgtcggcgggtcgcactcgcacgcccaggcgctgcgggtgctggaggcggcggtggggagcgcggaggggcgcgcggcggtgtgcgaggtggcggaggcggcgatcccggcggtggtgtcgaggatgatgaggtgcggcgggatgggcggcgcggaggcggcggtgtcggtgctgtgggcggtgtgccaccggtacagggaccggcgcgcggtggaggcggcggcggcgtccaagggcgggctgacgaagctcctcctgctgatgcagagcgggtgctcgccggcggcgaggcagatggcgtcggagctcctcaagatgttcaaggtgaacgccaagagctgcctcgccggctacgactccaagaccacccacatcatgcctttctaa
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| Protein seq | MVRKEMGGGGGRLAAEYQGLEVKVPTFFRCPISLDVMRSPVSLCTGVTYDRASIQRWIDSGNTTCPATMLPLPSTDLVPNLTLRRLIALWASTAAPPSSSSSPVAASAVGPTPAAAAAELLRRVGAPGVDPCPALRKLAAFLSDDDVDEFDKNALARAGGAAETVASVLRRRGKGGDDGDDDAGGVEAVEAAVRVLAVLATSDCIEEENRRRVAAVLAAGGAAPSVAASLARVMRSGSGLEARVDAARLVESLLRDGAGAATPGVRAALAESEELVAELIRLVGPADGKGSLDARAVDAGLSCLAAIVAGTRRARAEMVRLGAVPAAVRVLATDQRGVGGSHSHAQALRVLEAAVGSAEGRAAVCEVAEAAIPAVVSRMMRCGGMGGAEAAVSVLWAVCHRYRDRRAVEAAAASKGGLTKLLLLMQSGCSPAARQMASELLKMFKVNAKSCLAGYDSKTTHIMPF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.047502 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0540700 | RBH | 0.506995 | 0.494813 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g33680 | RBH | 0.342857 | 0.332803 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0540700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020310 | RBH | 0.108806 | 0.0 | 0.726470 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020420 | RBH | 0.0 | 0.0 | 0.183227 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020390 | RBH | 0.238811 | 2.545337 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020150 | RBH | 0.0 | 0.166682 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020100 | RBH | 0.599563 | 0.0 | 1.269522 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0331100 | RBH | 2.375842 | 52.995718 | 4.6755875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019800 | RBH | 0.0 | 0.0 | 0.103309 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0353300 | RBH | 6.3671205 | 116.371666 | 2.7945595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012970 | RBH | 0.230069 | 0.274132 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020060 | RBH | 0.187357 | 1.732245 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020480 | RBH | 0.0 | 6.538278 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020190 | RBH | 0.154337 | 0.136885 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019980 | RBH | 0.0 | 0.795107 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020440 | RBH | 0.0 | 0.0 | 0.201866 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020160 | RBH | 0.0 | 2.264064 | 0.0 |
