Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0020130 | OGI:02057290 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:21277088-21280065 | ||||||||
| Gene Symbol | OsFbox094, OsFbox94, Os_F0336, OsSTA62 | ||||||||||
| DNA seq | cagtgatcaaccactagtattatatttttcatcttgaaatatcaagtcgcaaacatttgaagtaaatggagcttgctgaccgacttctagtttgttgaacgaacagaagagacatggcaattctccaaccaagaacattcattctgagcaaagcatgtctagttcaaagggaagatggagcgaattaacagactactaagatttagatttaacgcataacccccaaaatccaaggacacagactaacagcagtagttctgccacaagcaaacgtcgatatgaagcaaaaacgcagccgaatgacctggatgtacatgaatcagatgacagtgatcttggctttgctagacgccctcgggagagccagtaacttggtaagacccttgcaaatgcacatgtattcatcgttaacgttcttggccctgaatatcttcagatcctctaaagcaggtgaccagctcagtagcagtccaacaagagcaacctcgcagttgagccccacgaaatcgtttatggccactgtcacgaggtgatgcaaggtaggctcttcaatctccgtctgatcttgatcccatattgtcttacgcctataagcttctggacgtgggaagctctgtagaagttgaagcaattagtcaggcatacacagttacacacaagcacgaagaacacaatcaacagaaaggcacggcagtctacagatagacaaaaaatattgtcaatttaacatcacgaggctggatggagatgtacccatatctcaagttctctgaaagtaggggcattctgaaatattgaacaagcacccaagacctctgtccagttccaaaagcacttctcaatacaaatcttcttcagatgatcaaacacacctgggagttgcatcgacaagcaccctttggatagatactgctaccagaataaaaccaatgagaattaccaataaaatttaatcagcatgatagttaaataaagcaaaactaataatatgttaccgtcaagaatgagccacttatagtaagttcttctatactagttaggctgacaaaagcttgcttcatgtagtttttcatgtcacctacaactgccacagactgttgggcttctgttttgtcgagtgtaatatacacatgggacagattaggtgcattcagatgaaagtcctcaaatttcccttcaacctctacaatctgcagtacctggccttcaatacggagacaactgataccatcgaaatgtttcaaacgcaatgtattcaaccaagggcatgaggagaccagagtatttatatcatggtctgttgaggagaaatatttcagattcaagacaaatagctgcttgaaaccttcaaactcctgaggcaaggcaatgatgcatcttttcataacaagtcttactatgctagttaggctgaccatagcttgcttcagataatttttcctgttgccttcaactacaacagattgttgggcttctgttttgtcaagtgaaacatctaaattggacagattaggtgcatgcagatgaaaatcttgaaagttccctttaacctctaaatcctgcagtgctggagcttgaatactgagacaagtgataccctcgaaatatttcaaacataatgtactcagcaaggagcatgaggagatcagattatttatgtcactgtctgttgaggagaaatatttcagattcaggacagttagccgcttgaaaccttcaaactcctgaggcaaaccgatgatgcatctttttatctgcagatattccaaatcactgagagagaagaggtttgacgggatcttatagttatgcccagagtaaaacttgattgtaatggaccttggttttttccttgacagcatgtacatccacctatcaaatacatcatggtatcttttgaaccctagaattgaaaaggaagcaagaggtccattgtggagcaaaagggccagatcgacgagcgtaataaagttggagcgttgtgtcgtttcagaggaaccccagctgagatacaaatcacaaagatatatttctggcaaagtagtccacacattcctccaagcactggataggatgctggctctaatagcatctaaggaattcagcttggagaggatggtgacctttatctcttgaggtaggctgctgaatttgtctgacctcaacgcagatgatggttccacctttgcctttttagcacgatgcatcgctccagagacgattatagtgacctcgcaattgtcgaacatcttggtgtagattatacacacatcaagtAaaaaaaaaaaggaagcagaaatcaatacactgaagacactcaagagcatataggtactaaatatggcaaacaatatgtgaagctcaaaccatacagatgatacagtaataggagcaagtggcattatgattcaattaattacgagcatacatgctcatcctatacactattgcactgcctatttccaaaagaccaaaagaccaaaacacacacacacacacacacactagaaatcgctgtggttctcgaagttggaatcgccatcgcaacgctgcttaaattagtggggatagtcccgttgctctaaaacactacaaatcgttgcctactagtacaactagtatatatggatttgggacacgcacaggatctgcctcaagagcaacagatttgcatcaggatggatcgattttcgcttggcacgaggaaaatgggaggggaggggggcggaatgcgcgccgagcgacgagcgagcgatatacctagggtttctggagagttggagcggacgggcacggggagcagcgggtcgccacgacgctcctcccccttccgccgccgtgacggtgtcgatctttagggcttcgctcgtcctgcaatggcggcgcttgacaagcgccgctaccagtgaggcagggaacgaacagttcggggccggaaaagagataataacacggcggatttgcttgaaaactttcac
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| CDS seq | atgttcgacaattgcgaggtcactataatcgtctctggagcgatgcatcgtgctaaaaaggcaaaggtggaaccatcatctgcgttgaggtcagacaaattcagcagcctacctcaagagataaaggtcaccatcctctccaagctgaattccttagatgctattagagccagcatcctatccagtgcttggaggaatgtgtggactactttgccagaaatatatctttgtgatttgtatctcagctggggttcctctgaaacgacacaacgctccaactttattacgctcgtcgatctggcccttttgctccacaatggacctcttgcttccttttcaattctagggttcaaaagataccatgatgtatttgataggtggatgtacatgctgtcaaggaaaaaaccaaggtccattacaatcaagttttactctgggcataactataagatcccgtcaaacctcttctctctcagtgatttggaatatctgcagataaaaagatgcatcatcggtttgcctcaggagtttgaaggtttcaagcggctaactgtcctgaatctgaaatatttctcctcaacagacagtgacataaataatctgatctcctcatgctccttgctgagtacattatgtttgaaatatttcgagggtatcacttgtctcagtattcaagctccagcactgcaggatttagaggttaaagggaactttcaagattttcatctgcatgcacctaatctgtccaatttagatgtttcacttgacaaaacagaagcccaacaatctgttgtagttgaaggcaacaggaaaaattatctgaagcaagctatggtcagcctaactagcatagtaagacttgttatgaaaagatgcatcattgccttgcctcaggagtttgaaggtttcaagcagctatttgtcttgaatctgaaatatttctcctcaacagaccatgatataaatactctggtctcctcatgcccttggttgaatacattgcgtttgaaacatttcgatggtatcagttgtctccgtattgaaggccaggtactgcagattgtagaggttgaagggaaatttgaggactttcatctgaatgcacctaatctgtcccatgtgtatattacactcgacaaaacagaagcccaacagtctgtggcagttgtaggtgacatgaaaaactacatgaagcaagcttttgtcagcctaactagtatagaagaacttactataagtggctcattcttgacgtatctatccaaagggtgcttgtcgatgcaactcccaggtgtgtttgatcatctgaagaagatttgtattgagaagtgcttttggaactggacagaggtcttgggtgcttgttcaatatttcagaatgcccctactttcagagaacttgagatatggagcttcccacgtccagaagcttataggcgtaagacaatatgggatcaagatcagacggagattgaagagcctaccttgcatcacctcgtgacagtggccataaacgatttcgtggggctcaactgcgaggttgctcttgttggactgctactgagctggtcacctgctttagaggatctgaagatattcagggccaagaacgttaacgatgaatacatgtgcatttgcaagggtcttaccaagttactggctctcccgagggcgtctagcaaagccaagatcactgtcatctga
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| Protein seq | MFDNCEVTIIVSGAMHRAKKAKVEPSSALRSDKFSSLPQEIKVTILSKLNSLDAIRASILSSAWRNVWTTLPEIYLCDLYLSWGSSETTQRSNFITLVDLALLLHNGPLASFSILGFKRYHDVFDRWMYMLSRKKPRSITIKFYSGHNYKIPSNLFSLSDLEYLQIKRCIIGLPQEFEGFKRLTVLNLKYFSSTDSDINNLISSCSLLSTLCLKYFEGITCLSIQAPALQDLEVKGNFQDFHLHAPNLSNLDVSLDKTEAQQSVVVEGNRKNYLKQAMVSLTSIVRLVMKRCIIALPQEFEGFKQLFVLNLKYFSSTDHDINTLVSSCPWLNTLRLKHFDGISCLRIEGQVLQIVEVEGKFEDFHLNAPNLSHVYITLDKTEAQQSVAVVGDMKNYMKQAFVSLTSIEELTISGSFLTYLSKGCLSMQLPGVFDHLKKICIEKCFWNWTEVLGACSIFQNAPTFRELEIWSFPRPEAYRRKTIWDQDQTEIEEPTLHHLVTVAINDFVGLNCEVALVGLLLSWSPALEDLKIFRAKNVNDEYMCICKGLTKLLALPRASSKAKITVI |
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| Function | F-box/FBD/LRR-repeat protein At1g13570 [UniProtKB/Swiss-Prot:Q9FZ70] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0020130 | OsLima_02g0020130.01 | Chr02 | 21277088 | 21280065 | - | NAM | ||
| CDS seq | atgttcgacaattgcgaggtcactataatcgtctctggagcgatgcatcgtgctaaaaaggcaaaggtggaaccatcatctgcgttgaggtcagacaaattcagcagcctacctcaagagataaaggtcaccatcctctccaagctgaattccttagatgctattagagccagcatcctatccagtgcttggaggaatgtgtggactactttgccagaaatatatctttgtgatttgtatctcagctggggttcctctgaaacgacacaacgctccaactttattacgctcgtcgatctggcccttttgctccacaatggacctcttgcttccttttcaattctagggttcaaaagataccatgatgtatttgataggtggatgtacatgctgtcaaggaaaaaaccaaggtccattacaatcaagttttactctgggcataactataagatcccgtcaaacctcttctctctcagtgatttggaatatctgcagataaaaagatgcatcatcggtttgcctcaggagtttgaaggtttcaagcggctaactgtcctgaatctgaaatatttctcctcaacagacagtgacataaataatctgatctcctcatgctccttgctgagtacattatgtttgaaatatttcgagggtatcacttgtctcagtattcaagctccagcactgcaggatttagaggttaaagggaactttcaagattttcatctgcatgcacctaatctgtccaatttagatgtttcacttgacaaaacagaagcccaacaatctgttgtagttgaaggcaacaggaaaaattatctgaagcaagctatggtcagcctaactagcatagtaagacttgttatgaaaagatgcatcattgccttgcctcaggagtttgaaggtttcaagcagctatttgtcttgaatctgaaatatttctcctcaacagaccatgatataaatactctggtctcctcatgcccttggttgaatacattgcgtttgaaacatttcgatggtatcagttgtctccgtattgaaggccaggtactgcagattgtagaggttgaagggaaatttgaggactttcatctgaatgcacctaatctgtcccatgtgtatattacactcgacaaaacagaagcccaacagtctgtggcagttgtaggtgacatgaaaaactacatgaagcaagcttttgtcagcctaactagtatagaagaacttactataagtggctcattcttgacgtatctatccaaagggtgcttgtcgatgcaactcccaggtgtgtttgatcatctgaagaagatttgtattgagaagtgcttttggaactggacagaggtcttgggtgcttgttcaatatttcagaatgcccctactttcagagaacttgagatatggagcttcccacgtccagaagcttataggcgtaagacaatatgggatcaagatcagacggagattgaagagcctaccttgcatcacctcgtgacagtggccataaacgatttcgtggggctcaactgcgaggttgctcttgttggactgctactgagctggtcacctgctttagaggatctgaagatattcagggccaagaacgttaacgatgaatacatgtgcatttgcaagggtcttaccaagttactggctctcccgagggcgtctagcaaagccaagatcactgtcatctga
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| Protein seq | MFDNCEVTIIVSGAMHRAKKAKVEPSSALRSDKFSSLPQEIKVTILSKLNSLDAIRASILSSAWRNVWTTLPEIYLCDLYLSWGSSETTQRSNFITLVDLALLLHNGPLASFSILGFKRYHDVFDRWMYMLSRKKPRSITIKFYSGHNYKIPSNLFSLSDLEYLQIKRCIIGLPQEFEGFKRLTVLNLKYFSSTDSDINNLISSCSLLSTLCLKYFEGITCLSIQAPALQDLEVKGNFQDFHLHAPNLSNLDVSLDKTEAQQSVVVEGNRKNYLKQAMVSLTSIVRLVMKRCIIALPQEFEGFKQLFVLNLKYFSSTDHDINTLVSSCPWLNTLRLKHFDGISCLRIEGQVLQIVEVEGKFEDFHLNAPNLSHVYITLDKTEAQQSVAVVGDMKNYMKQAFVSLTSIEELTISGSFLTYLSKGCLSMQLPGVFDHLKKICIEKCFWNWTEVLGACSIFQNAPTFRELEIWSFPRPEAYRRKTIWDQDQTEIEEPTLHHLVTVAINDFVGLNCEVALVGLLLSWSPALEDLKIFRAKNVNDEYMCICKGLTKLLALPRASSKAKITVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.270035 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0537200 | RBH | 0.243265 | 0.561412 | 2.076796 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g33400 | RBH | 0.160407 | 0.368182 | 0.521278 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0537200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020110 | RBH | 0.423863 | 3.509023 | 2.542332 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020230 | RBH | 0.0 | 0.0 | 0.977968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020180 | RBH | 0.855631 | 4.974254 | 4.233118 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019960 | RBH | 0.000000 | 0.108249 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019900 | RBH | 1.167822 | 3.081751 | 11.538442 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0328200 | RBH | 4.4485055 | 6.915801 | 15.38437 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019590 | RBH | 0.237177 | 0.214722 | 0.966246 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0349800 | RBH | 3.5453055 | 6.464018 | 26.215473 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019870 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020000 | RBH | 0.361144 | 0.640221 | 0.510705 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019790 | RBH | 0.000000 | 3.472910 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020240 | RBH | 0.397298 | 1.786000 | 1.363822 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019940 | RBH | 0.302655 | 0.0 | 3.330874 |
