Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0016700 | OGI:02046370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:17012982-17014502 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaaaccctcacccgcttccaccaaagccccgctcccgtggatctccccgctccactaccgaagccccacacgcgccgcgccgccctccccgccgccgccgccgcctccgctgcccgaagctcccctcacgcagctgcggtacgtccaccaccccgacctagcccgcctcatcgcctcctccccctccgcgcagcgcgcgctcgacctcttcaacgccgccgccgcgcagcgcggcttctcgcacaccccggccaccttcgccgcgctcctcgtccgcctcgcccgctcccgcctcccctccgccgccgccgccgtcctccgccgcgccgcctccgagccctgccgcttcctcgagccgcagttcctcccgctcctccgcctcctcccgcccgaccactccctcgcgctcctccgcctcctccccgcgctcctccgccggggccgcgtctcccgcaaggccctcgccgtctgcctcgaccgcctcgtctcctcccgccgctgccccgatgttctcaccgagctcctggccgacctgcgcgacccccggagcaagtaccttccgcagcccaacacgtgcatctacaacatcctcatcaagtattacgtcaagaaaggcgatttggggacagccttccaggtgtttgatgaaatgcgtaacatgaactgcgctgatgttagaccaagcttagtcacctattcaacattgataggtgggctctgtcgtggggctcagatgaaggaagcgtttgaactatttgaggacatgatcgagaaggaccgcattgtgccagaccagctaacatacaatttgctcatcggtggattctgcaggctaggacaggtggagaaagcacaatcgatctttggatttatgaggaagaatgagtgcgagccaaatgccttcaactatgccactttgataaatgggcactgtaagaaaggggaagtggaggcagcgaggggggtatttgaggagatgattagatctggggttcagccggatgctgtcagctatacctcacttgttggatgcctttgtcggcatgggaatgtggatgaggggatcaatcttgtgcaggagatgtggcagaaagggtgtaaggctgatgttgtcacatacaatctgctgcttgaggggttgtgcaaagatagacggatagcggaagcagtgaccttgcttgagaagttaccgtccgaaggagtacagctgaatgttgcaagctaccggattgtgatgaattgcctgtgctcatgtggagagatggagaaagcggctggcttgctgggcatgatgctcggacgaggatttgtacctcactatgcagcatcaaacatgctgttgattggtctgtgtgatgttgggagggtatcagatgcaacagtcacattgtatggactggtggacactgggttcatgccagaggctagatgctgggcaaggctgattgagtctgtgttccgggagagaaagcttaggagatctattgagctgttggatgtgctgattgctgaagggtga
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| CDS seq | atgaaaccctcacccgcttccaccaaagccccgctcccgtggatctccccgctccactaccgaagccccacacgcgccgcgccgccctccccgccgccgccgccgcctccgctgcccgaagctcccctcacgcagctgcggtacgtccaccaccccgacctagcccgcctcatcgcctcctccccctccgcgcagcgcgcgctcgacctcttcaacgccgccgccgcgcagcgcggcttctcgcacaccccggccaccttcgccgcgctcctcgtccgcctcgcccgctcccgcctcccctccgccgccgccgccgtcctccgccgcgccgcctccgagccctgccgcttcctcgagccgcagttcctcccgctcctccgcctcctcccgcccgaccactccctcgcgctcctccgcctcctccccgcgctcctccgccggggccgcgtctcccgcaaggccctcgccgtctgcctcgaccgcctcgtctcctcccgccgctgccccgatgttctcaccgagctcctggccgacctgcgcgacccccggagcaagtaccttccgcagcccaacacgtgcatctacaacatcctcatcaagtattacgtcaagaaaggcgatttggggacagccttccaggtgtttgatgaaatgcgtaacatgaactgcgctgatgttagaccaagcttagtcacctattcaacattgataggtgggctctgtcgtggggctcagatgaaggaagcgtttgaactatttgaggacatgatcgagaaggaccgcattgtgccagaccagctaacatacaatttgctcatcggtggattctgcaggctaggacaggtggagaaagcacaatcgatctttggatttatgaggaagaatgagtgcgagccaaatgccttcaactatgccactttgataaatgggcactgtaagaaaggggaagtggaggcagcgaggggggtatttgaggagatgattagatctggggttcagccggatgctgtcagctatacctcacttgttggatgcctttgtcggcatgggaatgtggatgaggggatcaatcttgtgcaggagatgtggcagaaagggtgtaaggctgatgttgtcacatacaatctgctgcttgaggggttgtgcaaagatagacggatagcggaagcagtgaccttgcttgagaagttaccgtccgaaggagtacagctgaatgttgcaagctaccggattgtgatgaattgcctgtgctcatgtggagagatggagaaagcggctggcttgctgggcatgatgctcggacgaggatttgtacctcactatgcagcatcaaacatgctgttgattggtctgtgtgatgttgggagggtatcagatgcaacagtcacattgtatggactggtggacactgggttcatgccagaggctagatgctgggcaaggctgattgagtctgtgttccgggagagaaagcttaggagatctattgagctgttggatgtgctgattgctgaagggtga
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| Protein seq | MKPSPASTKAPLPWISPLHYRSPTRAAPPSPPPPPPPLPEAPLTQLRYVHHPDLARLIASSPSAQRALDLFNAAAAQRGFSHTPATFAALLVRLARSRLPSAAAAVLRRAASEPCRFLEPQFLPLLRLLPPDHSLALLRLLPALLRRGRVSRKALAVCLDRLVSSRRCPDVLTELLADLRDPRSKYLPQPNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTGFMPEARCWARLIESVFRERKLRRSIELLDVLIAEG |
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| Function | Pentatricopeptide repeat-containing protein At5g18475 [UniProtKB/Swiss-Prot:Q3E9F0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0016700 | OsLima_02g0016700.01 | Chr02 | 17012982 | 17014502 | + | NAM | ||
| CDS seq | atgaaaccctcacccgcttccaccaaagccccgctcccgtggatctccccgctccactaccgaagccccacacgcgccgcgccgccctccccgccgccgccgccgcctccgctgcccgaagctcccctcacgcagctgcggtacgtccaccaccccgacctagcccgcctcatcgcctcctccccctccgcgcagcgcgcgctcgacctcttcaacgccgccgccgcgcagcgcggcttctcgcacaccccggccaccttcgccgcgctcctcgtccgcctcgcccgctcccgcctcccctccgccgccgccgccgtcctccgccgcgccgcctccgagccctgccgcttcctcgagccgcagttcctcccgctcctccgcctcctcccgcccgaccactccctcgcgctcctccgcctcctccccgcgctcctccgccggggccgcgtctcccgcaaggccctcgccgtctgcctcgaccgcctcgtctcctcccgccgctgccccgatgttctcaccgagctcctggccgacctgcgcgacccccggagcaagtaccttccgcagcccaacacgtgcatctacaacatcctcatcaagtattacgtcaagaaaggcgatttggggacagccttccaggtgtttgatgaaatgcgtaacatgaactgcgctgatgttagaccaagcttagtcacctattcaacattgataggtgggctctgtcgtggggctcagatgaaggaagcgtttgaactatttgaggacatgatcgagaaggaccgcattgtgccagaccagctaacatacaatttgctcatcggtggattctgcaggctaggacaggtggagaaagcacaatcgatctttggatttatgaggaagaatgagtgcgagccaaatgccttcaactatgccactttgataaatgggcactgtaagaaaggggaagtggaggcagcgaggggggtatttgaggagatgattagatctggggttcagccggatgctgtcagctatacctcacttgttggatgcctttgtcggcatgggaatgtggatgaggggatcaatcttgtgcaggagatgtggcagaaagggtgtaaggctgatgttgtcacatacaatctgctgcttgaggggttgtgcaaagatagacggatagcggaagcagtgaccttgcttgagaagttaccgtccgaaggagtacagctgaatgttgcaagctaccggattgtgatgaattgcctgtgctcatgtggagagatggagaaagcggctggcttgctgggcatgatgctcggacgaggatttgtacctcactatgcagcatcaaacatgctgttgattggtctgtgtgatgttgggagggtatcagatgcaacagtcacattgtatggactggtggacactgggttcatgccagaggctagatgctgggcaaggctgattgagtctgtgttccgggagagaaagcttaggagatctattgagctgttggatgtgctgattgctgaagggtga
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| Protein seq | MKPSPASTKAPLPWISPLHYRSPTRAAPPSPPPPPPPLPEAPLTQLRYVHHPDLARLIASSPSAQRALDLFNAAAAQRGFSHTPATFAALLVRLARSRLPSAAAAVLRRAASEPCRFLEPQFLPLLRLLPPDHSLALLRLLPALLRRGRVSRKALAVCLDRLVSSRRCPDVLTELLADLRDPRSKYLPQPNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTGFMPEARCWARLIESVFRERKLRRSIELLDVLIAEG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.204161 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0468500 | RBH | 0.763069 | 0.429625 | 0.293660 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g26890 | RBH | 0.306956 | 0.330680 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0468500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016560 | RBH | 0.0 | 1.719555 | 0.840837 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016690 | RBH | 0.0 | 0.0 | 0.419515 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016590 | RBH | 0.275971 | 0.0 | 1.739776 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016480 | RBH | 0.093772 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016380 | RBH | 2.579816 | 0.142835 | 3.431593 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0265000 | RBH | 0.9571225 | 3.1003695 | 1.939513 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016150 | RBH | 0.0 | 0.210911 | 0.264015 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0285700 | RBH | 0.7747175 | 2.351284 | 2.7540655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016250 | RBH | 0.119524 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0016780 | RBH | 0.774404 | 4.151388 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016570 | RBH | 0.0 | 0.157994 | 0.156366 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016310 | RBH | 0.017735 | 0.911684 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G016750 | RBH | 0.0 | 1.754296 | 0.466592 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016440 | RBH | 0.0 | 2.022391 | 0.550228 |
