Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0016200 | OGI:02045090 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:16570157-16573446 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtggaaggtgcggcgcttgagggtgcgcctgctgctggcccgctcaccgggcgaggcggcgcacgtgccgagcaacgacaaggtgttcgtctactgctccaacgcgcacctggccctgttcgtggtcgtcctcacgctgaacagcagctgcgacgccaccgtcgagcaacacatcgggctgatgcaggacatgttactcctcccgcaggtgatcggcaacgccacgtggcgcgtcaactgcaagcccctgcggggagcttctacgtcggcatcaccgtcgcgcgcctgctcccgcgcatgtacgacctcgtgcgaccacgtgcggtggcgcgtcccaatcgtcctcgctctcccccctccaacactctcgctaccgacgccctcctcttctctcacggcagcgacttggtgcgccaccgctcccgtcctcctaggctgccgccaccgtcgagccgtcttgcgaggcatggagtggatgtcgtattggggagcagatgtgggggtgcagggctggcagacggacggcgccccgcctcgacctcgctggccacaccgtccttggctgaagccatggcagcgacgccaggcagcaaggacgtcgaggccagcaccggcaccgccgcatccacggttgttgtcgtcgccatggcaagcgacgctggcaagctgtcgctgtgggcgctagtgaaagtggtggcgccgctccctcctctcccgccgacgccgccgcgcgctgctccctcctttcccgctggcaaccatcggggagaagggcggcggacttggtgcggctaccgcattgccgtattgctctcctcccctccatcttgctccctccccttccccccctcccgccaccgccttgctcccctccctgtcacttgctcccccgtggccgccaagctcctctcgccgccgccgactccaccgcccctcccctactcccgcgtcgttgccgcgtcgctgccttgctcccctcgccaccgctccttgctctcctccccgtcgccttgctcccaccacggccgccaagctcctctcgccgccaccgacgcccctcccctgctcccgcatcatcgccgcgtcgccgccttgctctcctccttgccaccgctttgctctcctccctacccatcttgcccaaagccagagagagaagagtgagagagagaggaggaagggagagaagaggggaaagagagagtaggatgacctggacaggctgacacgtggggcccttgtgggtcccacgctgactcagcagccacataggacaaatccggcatcaatactggcctgggacctcgggtgaccggttttgtatagttaaggaaccttgtatatctggttttacggttcgaggacgtttttatatcccgatgacaagtcgagggaccttgggtgtactttttccaaataggaaccctcaatacagaggtggcacagtaagtcatgcccacgtgggccacaaactagctggcagtccgcatggcccaacttgtggctctaccggtgttggaggagggaataagttcacctgccatccctcaactctacaccgagtttgtttgacattccttatcctcaatatcagaaattttcacccctaaactatataaaacgtacaatttaggtcccatggcactatagatgtttggtttcgctgacgtggcattctagtcagaaaaataaaaataaaaataatatatgggtcccacatgtaagtgtgagaagaaaaaaatgtggggcccacctgtcagccccatcatcttagaggtggggggcagcggggccaatcggcatcctattccccctttcccgtgggacgatctagactggcagcgtcgagtggaggagcttgttggcgatggcctcgtcgtgctagccctcagtgtcgcccatgataccagggctgagccgcaacatcagcacgtagaactccaccttgctcaacgcgttgtcgctgtcatggtcgccttcttgcaccatggctgtcgtctcctccaccgtaatctcgccaccgacagcgccgccccccaaccccagcacactcgccgcgcttcgccgcaggctcttcgtggtgatggggccactcgtcaggtcggcaagcagacgaaacctagcacgaagcaacaacaaaaggctcttcgcatgcacgccgccagcgacgttggtagatgactcctgcttctgttggtgatgatggttcatttttgcaggtggagggcgtcggcggccgtggtggggtgggtgccagcgcagagggactaggcgcggcggtggagggatccggcgaggacgacgatggtggtggtgccgtgccggcgcctaagagggaaagggggcgagagggggtctgccctgccagcgagagatggaagagagggggctgcctctctggtgggagagaccctctccacgcgttgcgctggcaagagaaggggggtggaggaaggaggagtggcgtccggcgtccggctaatgctattggcgcctcatcgcgacccaacttcggcaacaccaacccagctcgctggccggaaatagcgctccccctcctcctccgccgccgctctacccaccgcctcccgcttctccccccatttcccgccggtgcggcgtgtggagagggtgggagagggagaggcgggcggcgggagatgggggacggtagcggtggccggctggtgctgctaacggcgagctattgctgtttctgcgctcgcctgccgcgactggcctccctagcccgcttccccgatgccgaggacgacatcattgacctcctcctcgttgcgcttggtctgcgtgccgtggaagaaaagagaagaaagaaaggctgacacgtgagctcctcatttttaaatattttattttgttgactagaatgacacgtcagcgaaatcagatatcgataccgtcatgaaatctaaattgcacggttttgtataatttagggctgaagatttctggtattgggtttagggacgtcaaacaaacttgacgtaaagttgacggactactgttgaacttattccttccaggagcccatacaggcacggtggctcaaggcggcccgcagagcacacggttggtgcgcgcaagggcgggcaccacgagacgcagctgtaccggtgtaacatttgtaaataatcctcaaaaaattaaatttaaattgcaacgaatgaagtaaaaacgtgtgacggctacatgcgcagcggtgaaattcgtccacagatcaaaaggatctaccgcagattcgcaggatcgatatctgcaaaggcgtag
More
|
||||||||||
| CDS seq | atgtggaaggtgcggcgcttgagggtgcgcctgctgctggcccgctcaccgggcgaggcggcgcacgtgccgagcaacgacaaggtgttcgtctactgctccaacgcgcacctggccctgttcgtggtcgtcctcacgctgaacagcagctgcgacgccaccgtcgagcaacacatcgggctgatgcaggacatgttactcctcccgcaggtgatcggcaacgccacgtggcgcgtcaactgcaagcccctgcggggagcttctacgtcggcatcaccgtcgcgcgcctgctcccgcgcatccctcagtgtcgcccatgataccagggctgagccgcaacatcagcacgtagaactccaccttgctcaacgcgttgtcgctgtcatggtcgccttcttgcaccatggctgtcgtctcctccaccgtaatctcgccaccgacagcgccgccccccaaccccagcacactcgccgcgcttcgccgcaggctcttcgtggtgatggggccactcgtcaggtggagggcgtcggcggccgtggtggggtgggtgccagcgcagagggactaggcgcggcggtggagggatccggcgaggacgacgatggtggtggtgccgtgccggcgcctaagagggaaagggggcgagagggggtctgccctgccagcgagagatggaagagagggggctgcctctctggtgggagagaccctctccacgcgttgcgctggcaagagaaggggggtggaggaaggaggagtggcgtccggcgtccggctaatgctattggcgcctcatcgcgacccaacttcggcaacaccaacccagctcgctggccggaaatagcgctccccctcctcctccgccgccgctctacccaccgcctcccgcttctccccccatttcccgccgtaaaaacgtgtgacggctacatgcgcagcggtgaaattcgtccacagatcaaaaggatctaccgcagattcgcaggatcgatatctgcaaaggcgtag
More
|
||||||||||
| Protein seq | MWKVRRLRVRLLLARSPGEAAHVPSNDKVFVYCSNAHLALFVVVLTLNSSCDATVEQHIGLMQDMLLLPQVIGNATWRVNCKPLRGASTSASPSRACSRASLSVAHDTRAEPQHQHVELHLAQRVVAVMVAFLHHGCRLLHRNLATDSAAPQPQHTRRASPQALRGDGATRQVEGVGGRGGVGASAEGLGAAVEGSGEDDDGGGAVPAPKRERGREGVCPASERWKRGGCLSGGRDPLHALRWQEKGGGGRRSGVRRPANAIGASSRPNFGNTNPARWPEIALPLLLRRRSTHRLPLLPPFPAVKTCDGYMRSGEIRPQIKRIYRRFAGSISAKA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0016200 | OsLima_02g0016200.01 | Chr02 | 16570157 | 16573446 | + | NAM | ||
| CDS seq | atgtggaaggtgcggcgcttgagggtgcgcctgctgctggcccgctcaccgggcgaggcggcgcacgtgccgagcaacgacaaggtgttcgtctactgctccaacgcgcacctggccctgttcgtggtcgtcctcacgctgaacagcagctgcgacgccaccgtcgagcaacacatcgggctgatgcaggacatgttactcctcccgcaggtgatcggcaacgccacgtggcgcgtcaactgcaagcccctgcggggagcttctacgtcggcatcaccgtcgcgcgcctgctcccgcgcatccctcagtgtcgcccatgataccagggctgagccgcaacatcagcacgtagaactccaccttgctcaacgcgttgtcgctgtcatggtcgccttcttgcaccatggctgtcgtctcctccaccgtaatctcgccaccgacagcgccgccccccaaccccagcacactcgccgcgcttcgccgcaggctcttcgtggtgatggggccactcgtcaggtggagggcgtcggcggccgtggtggggtgggtgccagcgcagagggactaggcgcggcggtggagggatccggcgaggacgacgatggtggtggtgccgtgccggcgcctaagagggaaagggggcgagagggggtctgccctgccagcgagagatggaagagagggggctgcctctctggtgggagagaccctctccacgcgttgcgctggcaagagaaggggggtggaggaaggaggagtggcgtccggcgtccggctaatgctattggcgcctcatcgcgacccaacttcggcaacaccaacccagctcgctggccggaaatagcgctccccctcctcctccgccgccgctctacccaccgcctcccgcttctccccccatttcccgccgtaaaaacgtgtgacggctacatgcgcagcggtgaaattcgtccacagatcaaaaggatctaccgcagattcgcaggatcgatatctgcaaaggcgtag
More
|
|||||||
| Protein seq | MWKVRRLRVRLLLARSPGEAAHVPSNDKVFVYCSNAHLALFVVVLTLNSSCDATVEQHIGLMQDMLLLPQVIGNATWRVNCKPLRGASTSASPSRACSRASLSVAHDTRAEPQHQHVELHLAQRVVAVMVAFLHHGCRLLHRNLATDSAAPQPQHTRRASPQALRGDGATRQVEGVGGRGGVGASAEGLGAAVEGSGEDDDGGGAVPAPKRERGREGVCPASERWKRGGCLSGGRDPLHALRWQEKGGGGRRSGVRRPANAIGASSRPNFGNTNPARWPEIALPLLLRRRSTHRLPLLPPFPAVKTCDGYMRSGEIRPQIKRIYRRFAGSISAKA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g26190 | RBH | 0.021460 | 0.073653 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016040 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0015850 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0257200 | RBH | 0.0088935 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015640 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0277000 | RBH | 0.010666 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0015760 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0016280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0015800 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G016240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015960 | RBH | 0.0 | 0.0 | 0.0 |
