Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0013990 | OGI:02033420 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:12325761-12331275 | ||||||||
| Gene Symbol | NAAT1, OsNAAT1 | ||||||||||
| DNA seq | aaactacatgtgcaacttttatagatgagttcattgacacatatgaatttgtaagctttattcatagcaaattaatagttccattttggtgacaacaggtataaagcacaaacatcacaattagtactgatcattccaatcctagtacaatctagatataatttaaagggtttttcttcttgtgcctttggcagaaggatttgatcctctcaagaccatccaggagagaagatgaatcaatagcaaaagtaatgcgaacccaattcttcattcccagcacactccctgcatttaggcaacatagttaaattaggatacgtaaagtatatgtataaatacattattcgtaaaatagaaacattaacaaggctataacatttactttatttaagatattatattaaatctctagcttaatttactactacagagttaactaatatttaaagtggtagcataatattagatctctttgttagtttttccttcagtacttaaagtaatcaacatccataaactaaaaggacaaagtacgtgtacccaaatattgttggacattgaattatattttctcatataattaaggcatacgcaatttttatttacatgtgattggccctgttcttttcctcttacagattatggattcttacaagcacactttccaagctcatggatggtgcggtttttgcaaaatgttttctacatataagtttcttgtattttaaaacaacttttatcttttagatagtcaatatccgtttgtattctcaaatattataaaaaaagcagatgatctttcatttgttcatccataagacaaaaacaacaggtagggatataatgtgcctgtctgaatatcattgcatcactttgctaaattttctttcatatatagaaataaaataatgtcgtcatattcatatatcacatataaaaagtttacatgcaatcaataaaaaactcataaccacatatatttaaatattctaactaaactattatctattagtgattagagatgcaaaactaaaagtaattaactattaactttttttaagcaacaaaatcatagaataattttcaaagtttcataacaaaattaattaataagcataaatgtttagccaaaaagtaatcattagatttgtgagaaactaaataaggtagcatcacttatatgtcatggtatagcattagagaattacaagaacataacaagtgaattgaataatataatattaaatttataactttctttaattaaataggcacatacatatccatttattaacaaaaatgttagatgtacctgggcaaagaatcaccgactcttctttcgcaagttggcaacaaaaatcaacatcatcatggattccctccaaaagatataggttcaatttcacctgtttataggatttcaatgtaagattactggaagtgaagcttaagtgacaagtatgttgtagcaacaaaagaaaattgatgttaacatggcaaactacaacttcctaattatagcattattcttcaacacaatacaccaaaaatttctcatgactctgaattaagtgttttaggtgccaactaaattaaatatagcataattattttttgagtgtgataaattgatgctagtacagctctaatgataaaatgatttaagaggaaatcttaccatcacaaacatggatccttcgggcttgtgaggacaagtgatgcatttaatatcctttattcctctatagcaaatatctgatgtttccgtaagcaaatcaattatcctcttaaagaattcttccttggtattcttaagaatattcggtagagctccctaagaaattcaacaacaaaacatgcacaattcaattatttgagataaaatgaatacacgaggccaatataatatttttaaagcaagataccaataaataatctcagtataagaattgtatgcttactttaacgtaacattgaacttcacattatcacttaaataactacgcacctcagagtgaacacaaaatacaaacctcatcttctcaattaatttttaaaacatattattatgttttaacagaaataggatgaaatgaacataaaaaactgaattaaacttttttttgttactttgatgaacttatgtttgattataactctgattcataagtactatttatttggtaagtattcgatagtatattttaaaccagtagtttttctcagctacaaacaatgctagacaccacactgtgcattttgaacagccatccaatttccgaagagcgaccacaacacatagtccaccaaacattacataaagcagataaatgaccaaaattataacccaaacattggcttgttaaggaaaaaaacactaacctgaatgaaagttgctggatcagttgaaacattaaggaaattagtaattaatgttgcaatctacaaagaaagtagtatacacttagaaaaatatatatttcaaatatcaattcacaaaaaaagtatcaaaacagtattaaatatatattttaccttggtttcttgtagagtcttcttggggtcacatattgctacccaaccaagtcgccatcccggcactatccacctctttgatagcgatcctatggttaatattggtacgatgtgcccaaagcaacccattgggacaaatggggaactcccaaaaaccaaattaccatacacctcatcagtaattaccaatatcccaagcttccttgctacctctgccacctaaataacaataatacatatgcacattaataagttgcccataatattatttaaacttttatcaaatttaaataaaccagctgaaccttggataaatgctcgtaagtgtacacattcccgcatggattattgggatttatgatgactatcgcagtagtgttcttgtccgcaatagattctagggagttaaggtcaatctcccagcccttctcaggaataagatcaaagtgacgaacttcaaggttgttgaacgcggctcgagcttcatagtttgggtagcctggtctaggaagcaatatgtttgtgccaggttgggcaaggattgagattacgacctcgatggcctgagttcctccagcggttaggaagatgtcatcagaagatagcttgtatgggaggtcgcgtgacaaatgatctgccacagcactatattcaaaagaaaggcacaagattaatcaagatatattatgatataattaacaatcacataagcaagcatgaaccaacatcacgtaaatgcctctttcaggaagaactgcatcctcggcgcaaataaaacatttaattaataatcatacatgaaaaaaaaaacataatgaacaacatgccattattaaaaaaaacagcatgtaaaatcctttctaaagaagaaatgcatcatcaacccagaaaaaccgaattattggactatatattcttctcccctgcttctagtccacaaaaggcacgattgttctcaattcaaaagagagcacattttccttcctttcttttcctcctctttcttttgttttttcccccagaaatccagcagctacagccttcagtcctacagctagcacagatgcacaatgaaggctccatccgggctgtgcggccgccacgtcggacgagccgcagcagccggggggcgtgccagcacgcggtgggggcgggcgtggacgacgcggggctcgtgctcccccgccgcgggcgcgtgcgccgctcgggccgtacgtcccgtccatcgccagccgttggttccacttcagttctcctcccctactagctctcgccgaccaggggagtagtacgcctcgagatcgacgccaatacagtattcgcgcacatgtgacatgtgtaataacactacttcaataattgttttcttcatccagtttaaattcaattaaatccatggttctatatgggtttgaatcgaaacaaatcttccccgggattacattacagggaggttgtgagttgtgaccctactgacctcgtgttgcatatggggttgttgttttgccggttctttttttcaactctgaactctaaatttctcgtttttcattagcacactttttaaactgtaaaattatatattttcataaaaaaattatatgtgcaagttgtttaaaaaattcaaataaatctatttttcagtgctacagtccttaaaattatgaccaaagtgtgctcactacaacagagaagacccatgcagcttaattataggtgcctgatgatgtgtatatgaaatatatatcacccgtacatgttgcaaaataggaatcggatcaaagtgaacaaattatataactggtgggtaaagtagcacgcttttgttagtaaacaaagaatggtacgcagactaggggactgttttagtttattgccaaactttatcacgtctaaagtaggcagctccggttcttctggcaaaacgtttggcttataactacaattgtagcgtttttagatttgcttatagactcaatttgcaagctgatttattttggccataagtgtggcgagctttttgtcgagtgtcgaaaaactatagcttgctaaattggtgatatatgctgtttggcacacaaaataagcaaatgaaccaaccagtccctaaacactattcgtataattcgtattataattatcattaatgaataaaataagcactattagtaaatacgtgttatcactggctcgattcgaaagtactctagttgataaattttttaaactaaactattcaattttgaacgaaaactggcctcactatatatggctcgcctcggctcagcttgctagttctcgttaacaaacaaatagttgagaaaatttaataaactaattttaataaaggccataaaaggcaaacatgaaccatgcacacgtagcgaacaattaatcggcaaagaaacggaagcggaaaaaaaacataaaaccaaaaccgaatatttgaactcgccggaaaataatgaaaacaaaaaaaaaacggaagtggatggcgtgggtggtaccgtcgcgcggcggggaggccgacgccggcggggtagcagttgaagtcgccggagcggagcgcgtcggcgacggcgtcctcggcctcggcggcggtgcggaactcggggaacacggaggggtcgccgtgggcgagcggcaggacggggcgcgggccgcggtcgtcgacgctggcgctgatcttgtaccgcaccgcccggatgctcatcttgtcccccgccgccgccatcgcgccgcccctcgtcggcgccgtcagcctccactccttgctgctgccgtcgctctcgccgccgccgttgctgctcgccgccgccgccgccgtcgtcggtgccatggccgtgctctgttttttgttggtgaattccggtgcagaggaggaggtggtggtggtgcgcgtcggatagctagtgccgctatatttgtaggagattctacgggtgtgggacacggactcgggtggggcacagcagcatga
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| CDS seq | atggcaccgacgacggcggcggcggcggcgagcagcaacggcggcggcgagagcgacggcagcagcaaggagtggaggctgacggcgccgacgaggggcggcgcgatggcggcggcgggggacaagatgagcatccgggcggtgcggtacaagatcagcgccagcgtcgacgaccgcggcccgcgccccgtcctgccgctcgcccacggcgacccctccgtgttccccgagttccgcaccgccgccgaggccgaggacgccgtcgccgacgcgctccgctccggcgacttcaactgctaccccgccggcgtcggcctccccgccgcgcgacgtgctgtggcagatcatttgtcacgcgacctcccatacaagctatcttctgatgacatcttcctaaccgctggaggaactcaggccatcgaggtcgtaatctcaatccttgcccaacctggcacaaacatattgcttcctagaccaggctacccaaactatgaagctcgagccgcgttcaacaaccttgaagttcgtcactttgatcttattcctgagaagggctgggagattgaccttaactccctagaatctattgcggacaagaacactactgcgatagtcatcataaatcccaataatccatgcgggaatgtgtacacttacgagcatttatccaaggtggcagaggtagcaaggaagcttgggatattggtaattactgatgaggtgtatggtaatttggtttttgggagttccccatttgtcccaatgggttgctttgggcacatcgtaccaatattaaccataggatcgctatcaaagaggtggatagtgccgggatggcgacttggttgggtagcaatatgtgaccccaagaagactctacaagaaaccaagattgcaacattaattactaatttccttaatgtttcaactgatccagcaactttcattcagggagctctaccgaatattcttaagaataccaaggaagaattctttaagaggataattgatttgcttacggaaacatcagatatttgctatagaggaataaaggatattaaatgcatcacttgtcctcacaagcccgaaggatccatgtttgtgatggtgaaattgaacctatatcttttggagggaatccatgatgatgttgatttttgttgccaacttgcgaaagaagagtcggtgattctttgcccagggagtgtgctgggaatgaagaattgggttcgcattacttttgctattgattcatcttctctcctggatggtcttgagaggatcaaatccttctgccaaaggcacaagaagaaaaaccctttaaattatatctag
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| Protein seq | MAPTTAAAAASSNGGGESDGSSKEWRLTAPTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTAAEAEDAVADALRSGDFNCYPAGVGLPAARRAVADHLSRDLPYKLSSDDIFLTAGGTQAIEVVISILAQPGTNILLPRPGYPNYEARAAFNNLEVRHFDLIPEKGWEIDLNSLESIADKNTTAIVIINPNNPCGNVYTYEHLSKVAEVARKLGILVITDEVYGNLVFGSSPFVPMGCFGHIVPILTIGSLSKRWIVPGWRLGWVAICDPKKTLQETKIATLITNFLNVSTDPATFIQGALPNILKNTKEEFFKRIIDLLTETSDICYRGIKDIKCITCPHKPEGSMFVMVKLNLYLLEGIHDDVDFCCQLAKEESVILCPGSVLGMKNWVRITFAIDSSSLLDGLERIKSFCQRHKKKNPLNYI |
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| Function | Nicotianamine aminotransferase 1 [UniProtKB/Swiss-Prot:A0A0P0VI36] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0013990 | OsLima_02g0013990.01 | Chr02 | 12325761 | 12331275 | - | NAM | ||
| CDS seq | atggcaccgacgacggcggcggcggcggcgagcagcaacggcggcggcgagagcgacggcagcagcaaggagtggaggctgacggcgccgacgaggggcggcgcgatggcggcggcgggggacaagatgagcatccgggcggtgcggtacaagatcagcgccagcgtcgacgaccgcggcccgcgccccgtcctgccgctcgcccacggcgacccctccgtgttccccgagttccgcaccgccgccgaggccgaggacgccgtcgccgacgcgctccgctccggcgacttcaactgctaccccgccggcgtcggcctccccgccgcgcgacgtgctgtggcagatcatttgtcacgcgacctcccatacaagctatcttctgatgacatcttcctaaccgctggaggaactcaggccatcgaggtcgtaatctcaatccttgcccaacctggcacaaacatattgcttcctagaccaggctacccaaactatgaagctcgagccgcgttcaacaaccttgaagttcgtcactttgatcttattcctgagaagggctgggagattgaccttaactccctagaatctattgcggacaagaacactactgcgatagtcatcataaatcccaataatccatgcgggaatgtgtacacttacgagcatttatccaaggtggcagaggtagcaaggaagcttgggatattggtaattactgatgaggtgtatggtaatttggtttttgggagttccccatttgtcccaatgggttgctttgggcacatcgtaccaatattaaccataggatcgctatcaaagaggtggatagtgccgggatggcgacttggttgggtagcaatatgtgaccccaagaagactctacaagaaaccaagattgcaacattaattactaatttccttaatgtttcaactgatccagcaactttcattcagggagctctaccgaatattcttaagaataccaaggaagaattctttaagaggataattgatttgcttacggaaacatcagatatttgctatagaggaataaaggatattaaatgcatcacttgtcctcacaagcccgaaggatccatgtttgtgatggtgaaattgaacctatatcttttggagggaatccatgatgatgttgatttttgttgccaacttgcgaaagaagagtcggtgattctttgcccagggagtgtgctgggaatgaagaattgggttcgcattacttttgctattgattcatcttctctcctggatggtcttgagaggatcaaatccttctgccaaaggcacaagaagaaaaaccctttaaattatatctag
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| Protein seq | MAPTTAAAAASSNGGGESDGSSKEWRLTAPTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTAAEAEDAVADALRSGDFNCYPAGVGLPAARRAVADHLSRDLPYKLSSDDIFLTAGGTQAIEVVISILAQPGTNILLPRPGYPNYEARAAFNNLEVRHFDLIPEKGWEIDLNSLESIADKNTTAIVIINPNNPCGNVYTYEHLSKVAEVARKLGILVITDEVYGNLVFGSSPFVPMGCFGHIVPILTIGSLSKRWIVPGWRLGWVAICDPKKTLQETKIATLITNFLNVSTDPATFIQGALPNILKNTKEEFFKRIIDLLTETSDICYRGIKDIKCITCPHKPEGSMFVMVKLNLYLLEGIHDDVDFCCQLAKEESVILCPGSVLGMKNWVRITFAIDSSSLLDGLERIKSFCQRHKKKNPLNYI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0013990 | OsLima_02g0013990.02 | Chr02 | 12326721 | 12331275 | - | NAM | ||
| CDS seq | atggcaccgacgacggcggcggcggcggcgagcagcaacggcggcggcgagagcgacggcagcagcaaggagtggaggctgacggcgccgacgaggggcggcgcgatggcggcggcgggggacaagatgagcatccgggcggtgcggtacaagatcagcgccagcgtcgacgaccgcggcccgcgccccgtcctgccgctcgcccacggcgacccctccgtgttccccgagttccgcaccgccgccgaggccgaggacgccgtcgccgacgcgctccgctccggcgacttcaactgctaccccgccggcgtcggcctccccgccgcgcgacgtgctgtggcagatcatttgtcacgcgacctcccatacaagctatcttctgatgacatcttcctaaccgctggaggaactcaggccatcgaggtcgtaatctcaatccttgcccaacctggcacaaacatattgcttcctagaccaggctacccaaactatgaagctcgagccgcgttcaacaaccttgaagttcgtcactttgatcttattcctgagaagggctgggagattgaccttaactccctagaatctattgcggacaagaacactactgcgatagtcatcataaatcccaataatccatgcgggaatgtgtacacttacgagcatttatccaaggtggcagaggtagcaaggaagcttgggatattggtaattactgatgaggtgtatggtaatttggtttttgggagttccccatttgtcccaatgggttgctttgggcacatcgtaccaatattaaccataggatcgctatcaaagaggtggatagtgccgggatggcgacttggttgggtagcaatatgtgaccccaagaagactctacaagaaaccaagattgcaacattaattactaatttccttaatgtttcaactgatccagcaactttcattcagggagctctaccgaatattcttaagaataccaaggaagaattctttaagaggataattgatttgcttacggaaacatcagatatttgctatagaggaataaaggatattaaatgcatcacttgtcctcacaagcccgaaggatccatgtttgtgatggtgaaattgaacctatatcttttggagggaatccatgatgatgttgatttttgttgccaacttgcgaaagaagagtcggtgattctttgcccaggtacatctaacatttttgttaataaatggatatgtatgtgcctatttaattaa
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| Protein seq | MAPTTAAAAASSNGGGESDGSSKEWRLTAPTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTAAEAEDAVADALRSGDFNCYPAGVGLPAARRAVADHLSRDLPYKLSSDDIFLTAGGTQAIEVVISILAQPGTNILLPRPGYPNYEARAAFNNLEVRHFDLIPEKGWEIDLNSLESIADKNTTAIVIINPNNPCGNVYTYEHLSKVAEVARKLGILVITDEVYGNLVFGSSPFVPMGCFGHIVPILTIGSLSKRWIVPGWRLGWVAICDPKKTLQETKIATLITNFLNVSTDPATFIQGALPNILKNTKEEFFKRIIDLLTETSDICYRGIKDIKCITCPHKPEGSMFVMVKLNLYLLEGIHDDVDFCCQLAKEESVILCPGTSNIFVNKWICMCLFN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.777591 | 5.445035 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0306401 | RBH | 5.062947 | 7.392295 | 1.077244 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g20360 | RBH | 3.457865 | 4.756736 | 0.278162 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0306401 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013790 | RBH | 0.463226 | 56.914639 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013970 | RBH | 5.246524 | 161.553436 | 0.054380 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013790 | RBH | 0.256057 | 54.970791 | 1.850583 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013680 | RBH | 0.065269 | 0.720273 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013630 | RBH | 6.819536 | 434.498932 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0189800 | RBH | 7.2247 | 80.7008745 | 0.073948 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013450 | RBH | 0.507638 | 8.463467 | 0.143580 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0201900 | RBH | 27.511485 | 5.602186 | 0.369343 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013770 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013530 | RBH | 0.418787 | 94.189926 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014080 | RBH | 0.000000 | 367.991638 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013890 | RBH | 0.921288 | 6.072189 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013700 | RBH | 0.627040 | 30.364971 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014000 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013760 | RBH | 0.169898 | 183.425964 | 1.110940 |
