Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0013720 | OGI:02032640 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:12058385-12063057 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatttagaaagtacctccttttcctcctccgtttccttctggatcttcacctcatccattaacatgtgttcataatgcctgatcacatgaaccttaggttggttggagttcatatatgcaatcctccgaatggcagcatctgcattttgcacctcaaaaatactggaatccctgcaatcaattcttgcagtgacatccttaagagaggacaggtgctccaagccaatatcaaaatactttgtctctcgaacattaaaagctagctcaaggttttcaagccttggcatagaatattggctaaatataagccccatggcattagtggtaaacgaaaactcagctagccagtggaactttgcatgctcagtgccaacaaccaacctttctggttcaattttgaacacattaagacggagacaacatagagattgtaaggcaccaagactatgaagatcatcctgtcggagtacattaagtatcaaatctatggtggagagggacaataaggatgaattgatccaccttggcaatatggataattggccacatgaaagatatcggagatatcgcggagagcatcttatatttgatatgaactctgtggacagtttacagccatggatgtacaggtcacagattttgtgcaggttgcacaaagaatcaatcaaagtattctcataactatcatgccacgcaccagtactctctgaaatctggagtattcttagttctgtcaaactccctagctccttcaaaaagtttggagacttgctaataccaaccagtgatatttcctgtaagcattccattttcccaattccatcaggtaacttcaccgatgcatcaattagtaggcgcaccagtcttcttagatgaacgactgttgatggaagttcagttatgatagtgtgccttatgtccagtgtatgtaaacaacttaggttgccaatctttttggggagactaccaatatttgtatccttcagtactagagacctcaaatgaaacaaatcactgataccctcaatttggtgattcttcaagtcttgacaaccttctaaatccagtacgcgcaaaatacggaatctcgaaagggatggcaacaagttggtagcatgagggaatacgattagtgacctcacgcggggccacttcattttctcctgtcgtatcgtatggtcatatatgctgttttgaaggcataaccggcgagccctgtttggatgatatgtgggctgctgaccacctaatgatgtcacaaaatttgtttcatttgacaatgatgtgataagatcaagcaccatatcatgaacacgacaagcatgcacccttccatgactgtcgatgtatgctggttgaatcatgcttctgtttattagctcattgaagtatttacctccttcatgcaaagtatccatatcttctccaagtataaacccttcagaaatccatctgcgtatcagttgatctttctgtatattgtaatcctctggatatatacttagatataggaagcaagctcttaaatgggctggcaaatcataataactaatagacaatatgtgccgcatattctccacatgatggcttttctcaagtccagaaccaattaaattgtgtaccctatcccattggtataaattttgtggtctcatggccaataaactgcctatggtgattatggctaatgggactccctcacactttcttaaagttttttcagatatatccttcagttccaatggacaaccatcttcacagtagaatatccttttgtagaacaatttctttgagttatcactagaaagtggctgcagcttgtaaacggtatgatcaacctcagaagagcatggcgtggcagcatcaagcactctgcttgttgtgattattctgcttccacggtcattttctattaaagcacactcgatgcattcccatgctgatttctcccatatatcatcaattacaatcaagtacctgtggttttgtgataacattagcacaagacatgagttaaattgaaactgaaaaccaattaattggatcctttcaaaggcaagtaacagatgaagtattcaacagcacaaaaggctctgctctgagaaccacgagtactggcattggacagaaggtgagggagaggaaagacaggatctccagaagctatagtttccctacatgttcagtctcatgagttcagtcccacaagtatagggtttcatgaactcagtttcaatcatgttagatgtgaacattttatttacctaacctttaggtctggctactacttcctgaacttatgtagcatgtatttgctttttcgaagatagggaatgacttctaaataaataaataaaaacttgcagccaatttgatgctgatgcggcccattagcagcctaatggtatcaaacagagtagagtcaataatatttggaccaacatgcaaaaatttcctaggatatgacagggttgcagttttgtgagaagttcaaagaatagaagttgcctgaatccaaattgatcaaactagtaattttgctatcttggttttagttttccgaaagaaaagaactgtattttagacctctaagcttttgcctgtcttatcgaacaccctgaattcacatttctctttcatagccccttgaacttcccgttgttatcacacctagcaccctaagctagaatattactttcccagcccattgaacttggtttattagataaaaggattaatttcattgttaattcacctagcagtctgtgcatgtattttactatccctactagctccaaattctagctgtacttcaagctaaaatgcttacacatagcattggatgatcctgggagcatatcttatgtacacaagcactcacgtgtacataacaactaacaaatatcaccagaaaaatctaagaaaattcatatgtgtacttttaatagtattacatttacgtgtaaagtcccatcttcaaattcattctacagagagcaacaacaagaaacaaaattctgacagaattataaccttaaaactgtcacatttttttggttacggctaaaatataatgaatttgtacttgtaggtgtaatactattgaaagtacatgtatgaaattttctagattttttggtgacatttgttagttggtgtacagtgtgtacacgtgatggcttgtgtacacaggatatgttcccaatgatcttaagcatgtatttggttagttatacctcttttccttaatttcatctctgattttgttgatgatttcctgagcacaccatgtttctgtccaagcataaccttgttcactgaattgacggagtatgctgctcaggaccttctttagatcaggctttaaggatactgaaacaaaagcatgacactcgaattgtcctctaagctgttgataaatgacattagcaagagttgtcttgcctaaaccaccaactccaacgatggagatcactttcagtttattctttgagttgcccttggaatccatcagcagcttggtcaattcttccttaggtccacttatgccaataagtttagtagcctctccatagataccaattaaacggggatcaattgcggtctcagtcttggcagcagcaacaatagtaccaaccttatacctatcacggcgtgcactcgtctcattgacaagcctcctgatacgtttgatgtcggtagcaacacgatagcgaaccattgctcttctcaacaagctcaaacttcccttcatgaatcctttgagttcatgtggcttggctagcaaatgggtttcgacatgaaccatgaaattgtcgatgatatcctccatgtcgtacgactgctctctcacatccctctcccaaatcttaacctggcgatcagttacctgcacctcaaacaacttctcaagggcagcctgaatgctctcaagctcggctttaataaatatgatgtcgcccctcgcactgttctgcagcttgtattggtccatcagcagggtagtcaacttggcaatgagggcagtcatcgcccctgctacaactgccatctttgtcgatcttctttacactcaggtgtaattcaacagtgctgtcaagtagaacaacacagttagccttctttttgataaatgatatctacacatccccatcgactaaacaaacaccacacaccatgcaaaacaaatagaaactaatagcagccccatgctggcatgcccctttcctggtaagcaatggccggaatcgatcaattcgacaagagaaacttagcagcatgatgacctgaacagcgtgaagcatccaaatagtttggtatgagatcaagaagcacatgatggatacctggaacaacgtcctggaactggaagggagctggaactcttcctcctagctggcctgtgtgacaatgtcagtgaagacaccatgtctgacagacttaccttgggcaggcggtttatcaatggactatccacccgttggcttaatttactcctttcatggtcctggttttcaagggattagtgggttatttggattgttcacacttgcattcatcatactgtcattttctcaaacacgtagagggcatagtagaacaccatattctgttccgctcaaccttatccttgctagccagcaaaccttaaacaagaaagaaaactacaagt
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| CDS seq | atggcagttgtagcaggggcgatgactgccctcattgccaagttgactaccctgctgatggaccaatacaagctgcagaacagtgcgaggggcgacatcatatttattaaagccgagcttgagagcattcaggctgcccttgagaagttgtttgaggtgcaggtaactgatcgccaggttaagatttgggagagggatgtgagagagcagtcgtacgacatggaggatatcatcgacaatttcatggttcatgtcgaaacccatttgctagccaagccacatgaactcaaaggattcatgaagggaagtttgagcttgttgagaagagcaatggttcgctatcgtgttgctaccgacatcaaacgtatcaggaggcttgtcaatgagacgagtgcacgccgtgataggtataaggttggtactattgttgctgctgccaagactgagaccgcaattgatccccgtttaattggtatctatggagaggctactaaacttattggcataagtggacctaaggaagaattgaccaagctgctgatggattccaagggcaactcaaagaataaactgaaagtgatctccatcgttggagttggtggtttaggcaagacaactcttgctaatgtcatttatcaacagcttagaggacaattcgagtgtcatgcttttgtttcagtatccttaaagcctgatctaaagaaggtcctgagcagcatactccgtcaattcagtgaacaaggttatgcttggacagaaacatggtacttgattgtaattgatgatatatgggagaaatcagcatgggaatgcatcgagtgtgctttaatagaaaatgaccgtggaagcagaataatcacaacaagcagagtgcttgatgctgccacgccatgctcttctgaggttgatcataccgtttacaagctgcagccactttctagtgataactcaaagaaattgttctacaaaaggatattctactgtgaagatggttgtccattggaactgaaggatatatctgaaaaaactttaagaaagtgtgagggagtcccattagccataatcaccataggcagtttattggccatgagaccacaaaatttataccaatgggatagggtacacaatttaattggttctggacttgagaaaagccatcatgtggagaatatgcggcacatattgtctattagttattatgatttgccagcccatttaagagcttgcttcctatatctaagtatatatccagaggattacaatatacagaaagatcaactgatacgcagatggatttctgaagggtttatacttggagaagatatggatactttgcatgaaggaggtaaatacttcaatgagctaataaacagaagcatgattcaaccagcatacatcgacagtcatggaagggtgcatgcttgtcgtgttcatgatatggtgcttgatcttatcacatcattgtcaaatgaaacaaattttgtgacatcattaggtggtcagcagcccacatatcatccaaacagggctcgccggttatgccttcaaaacagcatatatgaccatacgatacgacaggagaaaatgaagtggccccgcgtgaggtcactaatcgtattccctcatgctaccaacttgttgccatccctttcgagattccgtattttgcgcgtactggatttagaaggttgtcaagacttgaagaatcaccaaattgagggtatcagtgatttgtttcatttgaggtctctagtactgaaggatacaaatattggtagtctccccaaaaagattggcaacctaagttgtttacatacactggacataaggcacactatcataactgaacttccatcaacagtcgttcatctaagaagactggtgcgcctactaattgatgcatcggtgaagttacctgatggaattgggaaaatggaatgcttacaggaaatatcactggttggtattagcaagtctccaaactttttgaaggagctagggagtttgacagaactaagaatactccagatttcagagagtactggtgcgtggcatgatagttatgagaatactttgattgattctttgtgcaacctgcacaaaatctgtgacctgtacatccatggctgtaaactgtccacagagttcatatcaaatataagatgctctccgcgatatctccgatatctttcatgtggccaattatccatattgccaaggtggatcaattcatccttattgtccctctccaccatagatttgatacttaatgtactccgacaggatgatcttcatagtcttggtgccttacaatctctatgttgtctccgtcttaatgtgttcaaaattgaaccagaaaggttggttgttggcactgagcatgcaaagttccactggctagctgagttttcgtttaccactaatgccatggggcttatatttagccaatattctatgccaaggcttgaaaaccttgagctagcttttaatgttcgagagacaaagtattttgatattggcttggagcacctgtcctctcttaaggatgtcactgcaagaattgattgcagggattccagtatttttgaggtgcaaaatgcagatgctgccattcggaggattgcatatatgaactccaaccaacctaaggttcatgtgatcaggcattatgaacacatgttaatggatgaggtgaagatccagaaggaaacggaggaggaaaaggaggtactttctaaatga
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| Protein seq | MAVVAGAMTALIAKLTTLLMDQYKLQNSARGDIIFIKAELESIQAALEKLFEVQVTDRQVKIWERDVREQSYDMEDIIDNFMVHVETHLLAKPHELKGFMKGSLSLLRRAMVRYRVATDIKRIRRLVNETSARRDRYKVGTIVAAAKTETAIDPRLIGIYGEATKLIGISGPKEELTKLLMDSKGNSKNKLKVISIVGVGGLGKTTLANVIYQQLRGQFECHAFVSVSLKPDLKKVLSSILRQFSEQGYAWTETWYLIVIDDIWEKSAWECIECALIENDRGSRIITTSRVLDAATPCSSEVDHTVYKLQPLSSDNSKKLFYKRIFYCEDGCPLELKDISEKTLRKCEGVPLAIITIGSLLAMRPQNLYQWDRVHNLIGSGLEKSHHVENMRHILSISYYDLPAHLRACFLYLSIYPEDYNIQKDQLIRRWISEGFILGEDMDTLHEGGKYFNELINRSMIQPAYIDSHGRVHACRVHDMVLDLITSLSNETNFVTSLGGQQPTYHPNRARRLCLQNSIYDHTIRQEKMKWPRVRSLIVFPHATNLLPSLSRFRILRVLDLEGCQDLKNHQIEGISDLFHLRSLVLKDTNIGSLPKKIGNLSCLHTLDIRHTIITELPSTVVHLRRLVRLLIDASVKLPDGIGKMECLQEISLVGISKSPNFLKELGSLTELRILQISESTGAWHDSYENTLIDSLCNLHKICDLYIHGCKLSTEFISNIRCSPRYLRYLSCGQLSILPRWINSSLLSLSTIDLILNVLRQDDLHSLGALQSLCCLRLNVFKIEPERLVVGTEHAKFHWLAEFSFTTNAMGLIFSQYSMPRLENLELAFNVRETKYFDIGLEHLSSLKDVTARIDCRDSSIFEVQNADAAIRRIAYMNSNQPKVHVIRHYEHMLMDEVKIQKETEEEKEVLSK |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0013720 | OsLima_02g0013720.01 | Chr02 | 12058385 | 12063057 | - | NAM | ||
| CDS seq | atggcagttgtagcaggggcgatgactgccctcattgccaagttgactaccctgctgatggaccaatacaagctgcagaacagtgcgaggggcgacatcatatttattaaagccgagcttgagagcattcaggctgcccttgagaagttgtttgaggtgcaggtaactgatcgccaggttaagatttgggagagggatgtgagagagcagtcgtacgacatggaggatatcatcgacaatttcatggttcatgtcgaaacccatttgctagccaagccacatgaactcaaaggattcatgaagggaagtttgagcttgttgagaagagcaatggttcgctatcgtgttgctaccgacatcaaacgtatcaggaggcttgtcaatgagacgagtgcacgccgtgataggtataaggttggtactattgttgctgctgccaagactgagaccgcaattgatccccgtttaattggtatctatggagaggctactaaacttattggcataagtggacctaaggaagaattgaccaagctgctgatggattccaagggcaactcaaagaataaactgaaagtgatctccatcgttggagttggtggtttaggcaagacaactcttgctaatgtcatttatcaacagcttagaggacaattcgagtgtcatgcttttgtttcagtatccttaaagcctgatctaaagaaggtcctgagcagcatactccgtcaattcagtgaacaaggttatgcttggacagaaacatggtacttgattgtaattgatgatatatgggagaaatcagcatgggaatgcatcgagtgtgctttaatagaaaatgaccgtggaagcagaataatcacaacaagcagagtgcttgatgctgccacgccatgctcttctgaggttgatcataccgtttacaagctgcagccactttctagtgataactcaaagaaattgttctacaaaaggatattctactgtgaagatggttgtccattggaactgaaggatatatctgaaaaaactttaagaaagtgtgagggagtcccattagccataatcaccataggcagtttattggccatgagaccacaaaatttataccaatgggatagggtacacaatttaattggttctggacttgagaaaagccatcatgtggagaatatgcggcacatattgtctattagttattatgatttgccagcccatttaagagcttgcttcctatatctaagtatatatccagaggattacaatatacagaaagatcaactgatacgcagatggatttctgaagggtttatacttggagaagatatggatactttgcatgaaggaggtaaatacttcaatgagctaataaacagaagcatgattcaaccagcatacatcgacagtcatggaagggtgcatgcttgtcgtgttcatgatatggtgcttgatcttatcacatcattgtcaaatgaaacaaattttgtgacatcattaggtggtcagcagcccacatatcatccaaacagggctcgccggttatgccttcaaaacagcatatatgaccatacgatacgacaggagaaaatgaagtggccccgcgtgaggtcactaatcgtattccctcatgctaccaacttgttgccatccctttcgagattccgtattttgcgcgtactggatttagaaggttgtcaagacttgaagaatcaccaaattgagggtatcagtgatttgtttcatttgaggtctctagtactgaaggatacaaatattggtagtctccccaaaaagattggcaacctaagttgtttacatacactggacataaggcacactatcataactgaacttccatcaacagtcgttcatctaagaagactggtgcgcctactaattgatgcatcggtgaagttacctgatggaattgggaaaatggaatgcttacaggaaatatcactggttggtattagcaagtctccaaactttttgaaggagctagggagtttgacagaactaagaatactccagatttcagagagtactggtgcgtggcatgatagttatgagaatactttgattgattctttgtgcaacctgcacaaaatctgtgacctgtacatccatggctgtaaactgtccacagagttcatatcaaatataagatgctctccgcgatatctccgatatctttcatgtggccaattatccatattgccaaggtggatcaattcatccttattgtccctctccaccatagatttgatacttaatgtactccgacaggatgatcttcatagtcttggtgccttacaatctctatgttgtctccgtcttaatgtgttcaaaattgaaccagaaaggttggttgttggcactgagcatgcaaagttccactggctagctgagttttcgtttaccactaatgccatggggcttatatttagccaatattctatgccaaggcttgaaaaccttgagctagcttttaatgttcgagagacaaagtattttgatattggcttggagcacctgtcctctcttaaggatgtcactgcaagaattgattgcagggattccagtatttttgaggtgcaaaatgcagatgctgccattcggaggattgcatatatgaactccaaccaacctaaggttcatgtgatcaggcattatgaacacatgttaatggatgaggtgaagatccagaaggaaacggaggaggaaaaggaggtactttctaaatga
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| Protein seq | MAVVAGAMTALIAKLTTLLMDQYKLQNSARGDIIFIKAELESIQAALEKLFEVQVTDRQVKIWERDVREQSYDMEDIIDNFMVHVETHLLAKPHELKGFMKGSLSLLRRAMVRYRVATDIKRIRRLVNETSARRDRYKVGTIVAAAKTETAIDPRLIGIYGEATKLIGISGPKEELTKLLMDSKGNSKNKLKVISIVGVGGLGKTTLANVIYQQLRGQFECHAFVSVSLKPDLKKVLSSILRQFSEQGYAWTETWYLIVIDDIWEKSAWECIECALIENDRGSRIITTSRVLDAATPCSSEVDHTVYKLQPLSSDNSKKLFYKRIFYCEDGCPLELKDISEKTLRKCEGVPLAIITIGSLLAMRPQNLYQWDRVHNLIGSGLEKSHHVENMRHILSISYYDLPAHLRACFLYLSIYPEDYNIQKDQLIRRWISEGFILGEDMDTLHEGGKYFNELINRSMIQPAYIDSHGRVHACRVHDMVLDLITSLSNETNFVTSLGGQQPTYHPNRARRLCLQNSIYDHTIRQEKMKWPRVRSLIVFPHATNLLPSLSRFRILRVLDLEGCQDLKNHQIEGISDLFHLRSLVLKDTNIGSLPKKIGNLSCLHTLDIRHTIITELPSTVVHLRRLVRLLIDASVKLPDGIGKMECLQEISLVGISKSPNFLKELGSLTELRILQISESTGAWHDSYENTLIDSLCNLHKICDLYIHGCKLSTEFISNIRCSPRYLRYLSCGQLSILPRWINSSLLSLSTIDLILNVLRQDDLHSLGALQSLCCLRLNVFKIEPERLVVGTEHAKFHWLAEFSFTTNAMGLIFSQYSMPRLENLELAFNVRETKYFDIGLEHLSSLKDVTARIDCRDSSIFEVQNADAAIRRIAYMNSNQPKVHVIRHYEHMLMDEVKIQKETEEEKEVLSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.051493 | 0.078166 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0301800 | RBH | 0.486834 | 0.454542 | 2.164742 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g19890 | RBH | 0.287607 | 0.231881 | 0.410094 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0301800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013540 | RBH | 0.424021 | 0.550582 | 2.571882 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013720 | RBH | 0.041320 | 1.037703 | 0.615712 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013550 | RBH | 0.000000 | 3.464930 | 3.735205 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013390 | RBH | 0.045876 | 0.168380 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013390 | RBH | 3.008103 | 1.666016 | 7.416228 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0167400 | SBH | 0.0851135 | 3.352567 | 0.003219 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013170 | RBH | 0.121580 | 0.257957 | 0.767146 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0197300 | RBH | 2.1652775 | 5.922062 | 8.3524185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013280 | RBH | 0.058668 | 4.858539 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013780 | RBH | 1.322236 | 7.101625 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013630 | RBH | 0.322606 | 0.824323 | 0.556876 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013430 | RBH | 0.331790 | 3.368497 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013760 | RBH | 0.100858 | 1.422831 | 1.612085 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013520 | RBH | 0.421285 | 4.445991 | 2.260765 |
