Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0013520 | OGI:02031940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:11808192-11810433 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actttgtccattaacactagagaagctagctagtgaaatcacacagaattcagatatgcagcaaatggctaagccagtttgcatattatgtctacagtgtagcctcctctatggcgttaatcttgcagccgttgctgctgccggtgacggcaacagcggcaaccagtttgcctactccggctttgctggagtgaaggacctcaccctcgacggcacggccatggtcacgccggatggcctactcgagctgaccaatggcaagccacaggttaaaggccatgcgttccatccgacgccgctgcgcttcggggagtcgtcgtccccagaaggcggggagaagaaggcagcagtgcggtctttctcggcgtcctttgtgttcggcatcatcactgcctcccccggcgtcggtagccatggcatcgccctggtcatcaccccaaccaaggacctctcctccgggctcgccagtacatacctgggattcctcaacagatcaagcaacggtgacgacagaaatcacatcttcgcggttgagcttgacaccatcgagaaccctgaattctccgacatcaacggcaaccatgtcggcatcgacatcaatagccttgtgtcttcaaatgcctctgatgccggctactatgatgacaacaccggtgagttcaagagtctaacactgattagcgggaaagccatgcaagtatgggtggactacaacgacgatgctacacagatcgacgtgaggcttgcttcggtaggaatcaagaagccgttcaagccattggtctctacgagattcaacctctcagcagtgatcaccgatgaagcatatgtgggcttctcagcgtcgataggcacaatgacctcgcaacactacgtgctcggctggagcttcggtgtgggcacacaagctccggccattgacatggataagcttcccaggttacctggcactggcagaagaagcaagaagtcttatcggcccaagaccatagtgatagctctaccaatagtctcagtggtgcttgtaattgctgttgctgctggtgtttttctactgatcaagaggaagtttcagagatatgtcgaattgcgtgaagattgggagcttgagtttggagcacatagactgtcatacaaggatttgcttcaggcaacagaacggttcaataacaagaacttgcttggaattggagggttcgggagggtgtacaaaggagtgctccctacttctagttcggaggttgcagtgaagagggtatcacacgactcaaggcaagggataaaggagtttgttgctgaggttgcaagcattggtcgcctccggcaccgtaatctcgtacaactgtttggttactgtcggctcagaaaagaacttcttttggtctacgactatatgccaaatggtagtctcgacaaatatctgtacagccatgatgacaagcctactctgaattgggctcaaaggttccagattataaagggtattgcatctggcttgctttatcttcatgaggagtgggagcaaattgttatccatcgggacatcaaaccaagtaatgtgctccttgacaacgacatgaatggacggctaggcgactttgggctcgctaggctctacaaccgtgacactgagctgcaaaccacagttgttgcaggtacctttggttacatggcccctgaattagcactaactggcaaggcatcccctcttacagacgtgttcgccttcggcacatttctccttgaggtcaccagtgggcgaaggcctgtcgagcaagacatcgaagggcatccactcctgctgacagactgggtgtttgagcattgcagcaatgaacagattctcgccgttattgacccaagacttaacggcaacattaacattagtgaagcaagtttagtattgaagttagggctcttgtgctcgcacccaatgtctaatgtaaggccaaccatgcgacaagttgtgcagtacctcaacggagacatgcccctcccagagatgtcatcaatgcactttactttcagcctgtcagcactcatgcagaaccaagggttcgactcgtcattgaagagtttaggcacgattagtactctttcaattgggagatgacaatgcaagatgacgcacttttgttcatagatagaatctgtttcttttcaccacattaggtcagagtttcttgtagttattcttagctgaagtgcactatctccagccttgagttgagagatttactaa
More
|
||||||||||
| CDS seq | atgcagcaaatggctaagccagtttgcatattatgtctacagtgtagcctcctctatggcgttaatcttgcagccgttgctgctgccggtgacggcaacagcggcaaccagtttgcctactccggctttgctggagtgaaggacctcaccctcgacggcacggccatggtcacgccggatggcctactcgagctgaccaatggcaagccacaggttaaaggccatgcgttccatccgacgccgctgcgcttcggggagtcgtcgtccccagaaggcggggagaagaaggcagcagtgcggtctttctcggcgtcctttgtgttcggcatcatcactgcctcccccggcgtcggtagccatggcatcgccctggtcatcaccccaaccaaggacctctcctccgggctcgccagtacatacctgggattcctcaacagatcaagcaacggtgacgacagaaatcacatcttcgcggttgagcttgacaccatcgagaaccctgaattctccgacatcaacggcaaccatgtcggcatcgacatcaatagccttgtgtcttcaaatgcctctgatgccggctactatgatgacaacaccggaatcaagaagccgttcaagccattggtctctacgagattcaacctctcagcagtgatcaccgatgaagcatatgtgggcttctcagcgtcgataggcacaatgacctcgcaacactacgtgctcggctggagcttcggtgtgggcacacaagctccggccattgacatggataagcttcccaggttacctggcactggcagaagaagcaagaagtcttatcggcccaagaccatagtgatagctctaccaatagtctcagtggtgcttgtaattgctgttgctgctggtgtttttctactgatcaagaggaagtttcagagatatgtcgaattgcgtgaagattgggagcttgagtttggagcacatagactgtcatacaaggatttgcttcaggcaacagaacggttcaataacaagaacttgcttggaattggagggttcgggagggtgtacaaaggagtgctccctacttctagttcggaggttgcagtgaagagggtatcacacgactcaaggcaagggataaaggagtttgttgctgaggttgcaagcattggtcgcctccggcaccgtaatctcgtacaactgtttggttactgtcggctcagaaaagaacttcttttggtctacgactatatgccaaatggtagtctcgacaaatatctgtacagccatgatgacaagcctactctgaattgggctcaaaggttccagattataaagggtattgcatctggcttgctttatcttcatgaggagtgggagcaaattgttatccatcgggacatcaaaccaagtaatgtgctccttgacaacgacatgaatggacggctaggcgactttgggctcgctaggctctacaaccgtgacactgagctgcaaaccacagttgttgcaggtacctttggttacatggcccctgaattagcactaactggcaaggcatcccctcttacagacgtgttcgccttcggcacatttctccttgaggtcaccagtgggcgaaggcctgtcgagcaagacatcgaagggcatccactcctgctgacagactgggtgtttgagcattgcagcaatgaacagattctcgccgttattgacccaagacttaacggcaacattaacattagtgaagcaagtttagtattgaagttagggctcttgtgctcgcacccaatgtctaatgtaaggccaaccatgcgacaagttgtgcagtacctcaacggagacatgcccctcccagagatgtcatcaatgcactttactttcagcctgtcagcactcatgcagaaccaagggttcgactcgtcattgaagagtttaggcacgattagtactctttcaattgggagatga
More
|
||||||||||
| Protein seq | MQQMAKPVCILCLQCSLLYGVNLAAVAAAGDGNSGNQFAYSGFAGVKDLTLDGTAMVTPDGLLELTNGKPQVKGHAFHPTPLRFGESSSPEGGEKKAAVRSFSASFVFGIITASPGVGSHGIALVITPTKDLSSGLASTYLGFLNRSSNGDDRNHIFAVELDTIENPEFSDINGNHVGIDINSLVSSNASDAGYYDDNTGIKKPFKPLVSTRFNLSAVITDEAYVGFSASIGTMTSQHYVLGWSFGVGTQAPAIDMDKLPRLPGTGRRSKKSYRPKTIVIALPIVSVVLVIAVAAGVFLLIKRKFQRYVELREDWELEFGAHRLSYKDLLQATERFNNKNLLGIGGFGRVYKGVLPTSSSEVAVKRVSHDSRQGIKEFVAEVASIGRLRHRNLVQLFGYCRLRKELLLVYDYMPNGSLDKYLYSHDDKPTLNWAQRFQIIKGIASGLLYLHEEWEQIVIHRDIKPSNVLLDNDMNGRLGDFGLARLYNRDTELQTTVVAGTFGYMAPELALTGKASPLTDVFAFGTFLLEVTSGRRPVEQDIEGHPLLLTDWVFEHCSNEQILAVIDPRLNGNINISEASLVLKLGLLCSHPMSNVRPTMRQVVQYLNGDMPLPEMSSMHFTFSLSALMQNQGFDSSLKSLGTISTLSIGR |
||||||||||
| Function | L-type lectin-domain containing receptor kinase SIT1 [UniProtKB/Swiss-Prot:Q6H7D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0013520 | OsLima_02g0013520.01 | Chr02 | 11808192 | 11810433 | + | NAM | ||
| CDS seq | atgcagcaaatggctaagccagtttgcatattatgtctacagtgtagcctcctctatggcgttaatcttgcagccgttgctgctgccggtgacggcaacagcggcaaccagtttgcctactccggctttgctggagtgaaggacctcaccctcgacggcacggccatggtcacgccggatggcctactcgagctgaccaatggcaagccacaggttaaaggccatgcgttccatccgacgccgctgcgcttcggggagtcgtcgtccccagaaggcggggagaagaaggcagcagtgcggtctttctcggcgtcctttgtgttcggcatcatcactgcctcccccggcgtcggtagccatggcatcgccctggtcatcaccccaaccaaggacctctcctccgggctcgccagtacatacctgggattcctcaacagatcaagcaacggtgacgacagaaatcacatcttcgcggttgagcttgacaccatcgagaaccctgaattctccgacatcaacggcaaccatgtcggcatcgacatcaatagccttgtgtcttcaaatgcctctgatgccggctactatgatgacaacaccggaatcaagaagccgttcaagccattggtctctacgagattcaacctctcagcagtgatcaccgatgaagcatatgtgggcttctcagcgtcgataggcacaatgacctcgcaacactacgtgctcggctggagcttcggtgtgggcacacaagctccggccattgacatggataagcttcccaggttacctggcactggcagaagaagcaagaagtcttatcggcccaagaccatagtgatagctctaccaatagtctcagtggtgcttgtaattgctgttgctgctggtgtttttctactgatcaagaggaagtttcagagatatgtcgaattgcgtgaagattgggagcttgagtttggagcacatagactgtcatacaaggatttgcttcaggcaacagaacggttcaataacaagaacttgcttggaattggagggttcgggagggtgtacaaaggagtgctccctacttctagttcggaggttgcagtgaagagggtatcacacgactcaaggcaagggataaaggagtttgttgctgaggttgcaagcattggtcgcctccggcaccgtaatctcgtacaactgtttggttactgtcggctcagaaaagaacttcttttggtctacgactatatgccaaatggtagtctcgacaaatatctgtacagccatgatgacaagcctactctgaattgggctcaaaggttccagattataaagggtattgcatctggcttgctttatcttcatgaggagtgggagcaaattgttatccatcgggacatcaaaccaagtaatgtgctccttgacaacgacatgaatggacggctaggcgactttgggctcgctaggctctacaaccgtgacactgagctgcaaaccacagttgttgcaggtacctttggttacatggcccctgaattagcactaactggcaaggcatcccctcttacagacgtgttcgccttcggcacatttctccttgaggtcaccagtgggcgaaggcctgtcgagcaagacatcgaagggcatccactcctgctgacagactgggtgtttgagcattgcagcaatgaacagattctcgccgttattgacccaagacttaacggcaacattaacattagtgaagcaagtttagtattgaagttagggctcttgtgctcgcacccaatgtctaatgtaaggccaaccatgcgacaagttgtgcagtacctcaacggagacatgcccctcccagagatgtcatcaatgcactttactttcagcctgtcagcactcatgcagaaccaagggttcgactcgtcattgaagagtttaggcacgattagtactctttcaattgggagatga
More
|
|||||||
| Protein seq | MQQMAKPVCILCLQCSLLYGVNLAAVAAAGDGNSGNQFAYSGFAGVKDLTLDGTAMVTPDGLLELTNGKPQVKGHAFHPTPLRFGESSSPEGGEKKAAVRSFSASFVFGIITASPGVGSHGIALVITPTKDLSSGLASTYLGFLNRSSNGDDRNHIFAVELDTIENPEFSDINGNHVGIDINSLVSSNASDAGYYDDNTGIKKPFKPLVSTRFNLSAVITDEAYVGFSASIGTMTSQHYVLGWSFGVGTQAPAIDMDKLPRLPGTGRRSKKSYRPKTIVIALPIVSVVLVIAVAAGVFLLIKRKFQRYVELREDWELEFGAHRLSYKDLLQATERFNNKNLLGIGGFGRVYKGVLPTSSSEVAVKRVSHDSRQGIKEFVAEVASIGRLRHRNLVQLFGYCRLRKELLLVYDYMPNGSLDKYLYSHDDKPTLNWAQRFQIIKGIASGLLYLHEEWEQIVIHRDIKPSNVLLDNDMNGRLGDFGLARLYNRDTELQTTVVAGTFGYMAPELALTGKASPLTDVFAFGTFLLEVTSGRRPVEQDIEGHPLLLTDWVFEHCSNEQILAVIDPRLNGNINISEASLVLKLGLLCSHPMSNVRPTMRQVVQYLNGDMPLPEMSSMHFTFSLSALMQNQGFDSSLKSLGTISTLSIGR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.038584 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0299000 | RBH | 0.165712 | 0.113446 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g19550 | RBH | 0.945660 | 0.704545 | 0.067253 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0299000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013350 | RBH | 0.073840 | 0.0 | 0.739223 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013540 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013370 | RBH | 0.589840 | 0.0 | 1.419459 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013210 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013190 | RBH | 1.418397 | 2.421524 | 1.095988 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0181500 | RBH | 0.9506765 | 0.764169 | 0.7915025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012960 | RBH | 0.119626 | 0.066624 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0194100 | RBH | 0.6890615 | 0.908194 | 2.4310385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001790 | SBH | 0.096715 | 0.031098 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013070 | RBH | 0.000000 | 1.407024 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013580 | RBH | 1.100805 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013250 | RBH | 0.071597 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013560 | RBH | 0.121859 | 0.415619 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013330 | RBH | 0.454628 | 0.0 | 0.646338 |
