Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0011160 | OGI:02024940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:9121498-9124065 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaaaaaagagctgctgacgaagctacactacatatcaagccattcttgtcgtagtattgtcacgcgtagcggcgaagatggtttgtgatctcggtcatcagctgaggagatggtctaccagaagttggaatggctagaaaatctcttgcaatcctggctaccgtgggatacctgccacaattgtccttccaccacttgagaacatcgaaatcctcttgatccagagggacggtatcatcttgcagataggcttcgagttctctcgtgtgttcctgtgaactcgtattgccctgctctgtgagttgcaaagtactcccattcccttgtattgatggatccacatccatttcatggatatgattagcatgctctgtggcattgttctcattattgtaatctgtttcaatgctttgtgttttgtactccgtgaagagctgacgaaattcttctcctaccttagaaaatagatctgcagagggagccttctcaagaatgctctgaaaattcttgagaaagttttcaacatagacgagcttatatcttgggtccaaaataagtggtatgcttagtaacaaatatgactctaacagatagctgtcaagttctcttattgcattctgaacatattttataaccttttcatcctcgtgacggttacttagttcaccactggaattttgcatccttcctgaacaattgttgaatccgactactaacatgtctctcacttccagcatctctatgaggaccagatttgaagtgggcaagctggaggctgaaattgttttgatggcacggtatatccttcctagcgtagtgcgtaacagctcagtaaaccatgtctcatggaatatgactttgcctgctaaggctctaatttttgctggtccggaagagcattccttgtgaataatttctatcgcataataatacgcataccaccacttgttgtatgtccaagggtgatctagctgcaaatgcgaagaaatatctctgcgtttcttcttcaaattttcatcttcaaaggcgtcgaggcaatcttgtccgtaagaactgaatggataacgtagattcgaagcaatatcaggtaaatcccaccataaattggtagcacagagcagctcatgttgggttgcagatagatgtggtagaccattatcatcgtaaattatttttccaaattctgtcgtaccaaaattttctattagaacgccactaagcttagacaaaaggccccaatgagaaataattcccaacatacgctcatagtcctccagatcccaatctgtaactgggatgtctatgatgtgatctttgatatccaatatcttactgagaccataggtggtgtcatcttccacttctaatgccttaaacacctgtataactctgcaatggaaattccactcttcatcaatgaagtgggcagccaaatacgcaactttcccccaggcagttgtggtttttcctaatgataagctagcaagcccaggcgtacgcccaatagcatccttcaagctgctcatttctcggtcgaagagctcatcgcacctcttccggacatcgtctcgcgacggcatcttgaagtcagggcagagcatccgaacaaatcttgtgaactccacgtcttccaccatggaggaagggaacccgtgcagcgcgatcatcctgatgagctgatcttcagcagcagcagcagccgctgtttgctcacccaaatcatcagagctcgatcttgagaacgccgatgcaccatgatgagagccctgctgcctgccacgcttccggcaggattcctggtagtgcctgttgagacgcgaggtgccattcttgtagctgagcaagttatggcagtgcctgcactctgccatgttgtcagccttcttctcaaagtgagcccaacactctgaccccatgcccactgcacaacagagaacactttgatccaaaggaggaatgggaagttgctaccaatcataagcaaaagaagacgatatcatatgaaaaatcaatcagttcccgaatgattcagtaaaataaaaaaactcaaaaggttaacatagaacagatgcatatgtatggatgcctgaaaagattttgtttcaaatttcccccttccagccgggttagagttaagagttaaaccaatctaagaacaagaagagatccgctagccaaaaccaaattaacctatcaaaagtagaataagagttaacatagaacagatgcctgaaaagattttgtttcaaaatttccccttccagttggattagagttaagagttaaaagcacctaagaaatccgctagctaaaaccaaattacagtttaccggtacacaacacacctgcggagaaacaaaggaacgaaagagagaggtagccgatctgggagaacttacctgatgagaaggctgatcgatggagggatgctccctgccactttcctgagcctctctctcgatcgatccggctgctgcctgctgctgttgctcggctgcttcttctccaacttcttcgcctagtaggagtatacgaagagagcgagacggtcaaaatggaagggaccc
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| CDS seq | atggggtcagagtgttgggctcactttgagaagaaggctgacaacatggcagagtgcaggcactgccataacttgctcagctacaagaatggcacctcgcgtctcaacaggcactaccaggaatcctgccggaagcgtggcaggcagcagggctctcatcatggtgcatcggcgttctcaagatcgagctctgatgatttgggtgagcaaacagcggctgctgctgctgctgaagatcagctcatcaggatgatcgcgctgcacgggttcccttcctccatggtggaagacgtggagttcacaagatttgttcggatgctctgccctgacttcaagatgccgtcgcgagacgatgtccggaagaggtgcgatgagctcttcgaccgagaaatgagcagcttgaaggatgctattgggcgtacgcctgggcttgctagcttatcattaggaaaaaccacaactgcctgggggaaagttgcgtatttggctgcccacttcattgatgaagagtggaatttccattgcagagttatacaggtgtttaaggcattagaagtggaagatgacaccacctatggtctcagtaagatattggatatcaaagatcacatcatagacatcccagttacagattgggatctggaggactatgagcgtatgttgggaattatttctcattggggccttttgtctaagcttagtggcgttctaatagaaaattttggtacgacagaatttggaaaaataatttacgatgataatggtctaccacatctatctgcaacccaacatgagctgctctgtgctaccaatttatggtgggatttacctgatattgcttcgaatctacgttatccattcagttcttacggacaagattgcctcgacgcctttgaagatgaaaatttgaagaagaaacgcagagatatttcttcgcatttgcagctagatcacccttggacatacaacaagtggtggtatgcgtattattatgcgatagaaattattcacaaggaatgctcttccggaccagcaaaaattagagccttagcaggcaaagtcatattccatgagacatggtttactgagctgttacgcactacgctaggaaggatataccgtgccatcaaaacaatttcagcctccagcttgcccacttcaaatctggtcctcatagagatgctggaagtgagagacatgttagtagtcggattcaacaattgttcaggaaggatgcaaaattccagtggtgaactaagtaaccgtcacgaggatgaaaaggttataaaatatgttcagaatgcaataagagaacttgacagctatctgttagagtcatatttgttactaagcataccacttattttggacccaagatataagctcgtctatgttgaaaactttctcaagaattttcagagcattcttgagaaggctccctctgcagatctattttctaaggtaggagaagaatttcgtcagctcttcacggagtacaaaacacaaagcattgaaacagattacaataatgagaacaatgccacagagcatgctaatcatatccatgaaatggatgtggatccatcaatacaagggaatgggagtactttgcaactcacagagcagggcaatacgagttcacaggaacacacgagagaactcgaagcctatctgcaagatgataccgtccctctggatcaagaggatttcgatgttctcaagtggtggaaggacaattgtggcaggtatcccacggtagccaggattgcaagagattttctagccattccaacttctggtagaccatctcctcagctgatgaccgagatcacaaaccatcttcgccgctacgcgtga
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| Protein seq | MGSECWAHFEKKADNMAECRHCHNLLSYKNGTSRLNRHYQESCRKRGRQQGSHHGASAFSRSSSDDLGEQTAAAAAAEDQLIRMIALHGFPSSMVEDVEFTRFVRMLCPDFKMPSRDDVRKRCDELFDREMSSLKDAIGRTPGLASLSLGKTTTAWGKVAYLAAHFIDEEWNFHCRVIQVFKALEVEDDTTYGLSKILDIKDHIIDIPVTDWDLEDYERMLGIISHWGLLSKLSGVLIENFGTTEFGKIIYDDNGLPHLSATQHELLCATNLWWDLPDIASNLRYPFSSYGQDCLDAFEDENLKKKRRDISSHLQLDHPWTYNKWWYAYYYAIEIIHKECSSGPAKIRALAGKVIFHETWFTELLRTTLGRIYRAIKTISASSLPTSNLVLIEMLEVRDMLVVGFNNCSGRMQNSSGELSNRHEDEKVIKYVQNAIRELDSYLLESYLLLSIPLILDPRYKLVYVENFLKNFQSILEKAPSADLFSKVGEEFRQLFTEYKTQSIETDYNNENNATEHANHIHEMDVDPSIQGNGSTLQLTEQGNTSSQEHTRELEAYLQDDTVPLDQEDFDVLKWWKDNCGRYPTVARIARDFLAIPTSGRPSPQLMTEITNHLRRYA |
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| Function | Zinc finger BED domain-containing protein DAYSLEEPER [UniProtKB/Swiss-Prot:Q9M2N5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0011160 | OsLima_02g0011160.01 | Chr02 | 9121498 | 9124065 | - | NAM | ||
| CDS seq | atggggtcagagtgttgggctcactttgagaagaaggctgacaacatggcagagtgcaggcactgccataacttgctcagctacaagaatggcacctcgcgtctcaacaggcactaccaggaatcctgccggaagcgtggcaggcagcagggctctcatcatggtgcatcggcgttctcaagatcgagctctgatgatttgggtgagcaaacagcggctgctgctgctgctgaagatcagctcatcaggatgatcgcgctgcacgggttcccttcctccatggtggaagacgtggagttcacaagatttgttcggatgctctgccctgacttcaagatgccgtcgcgagacgatgtccggaagaggtgcgatgagctcttcgaccgagaaatgagcagcttgaaggatgctattgggcgtacgcctgggcttgctagcttatcattaggaaaaaccacaactgcctgggggaaagttgcgtatttggctgcccacttcattgatgaagagtggaatttccattgcagagttatacaggtgtttaaggcattagaagtggaagatgacaccacctatggtctcagtaagatattggatatcaaagatcacatcatagacatcccagttacagattgggatctggaggactatgagcgtatgttgggaattatttctcattggggccttttgtctaagcttagtggcgttctaatagaaaattttggtacgacagaatttggaaaaataatttacgatgataatggtctaccacatctatctgcaacccaacatgagctgctctgtgctaccaatttatggtgggatttacctgatattgcttcgaatctacgttatccattcagttcttacggacaagattgcctcgacgcctttgaagatgaaaatttgaagaagaaacgcagagatatttcttcgcatttgcagctagatcacccttggacatacaacaagtggtggtatgcgtattattatgcgatagaaattattcacaaggaatgctcttccggaccagcaaaaattagagccttagcaggcaaagtcatattccatgagacatggtttactgagctgttacgcactacgctaggaaggatataccgtgccatcaaaacaatttcagcctccagcttgcccacttcaaatctggtcctcatagagatgctggaagtgagagacatgttagtagtcggattcaacaattgttcaggaaggatgcaaaattccagtggtgaactaagtaaccgtcacgaggatgaaaaggttataaaatatgttcagaatgcaataagagaacttgacagctatctgttagagtcatatttgttactaagcataccacttattttggacccaagatataagctcgtctatgttgaaaactttctcaagaattttcagagcattcttgagaaggctccctctgcagatctattttctaaggtaggagaagaatttcgtcagctcttcacggagtacaaaacacaaagcattgaaacagattacaataatgagaacaatgccacagagcatgctaatcatatccatgaaatggatgtggatccatcaatacaagggaatgggagtactttgcaactcacagagcagggcaatacgagttcacaggaacacacgagagaactcgaagcctatctgcaagatgataccgtccctctggatcaagaggatttcgatgttctcaagtggtggaaggacaattgtggcaggtatcccacggtagccaggattgcaagagattttctagccattccaacttctggtagaccatctcctcagctgatgaccgagatcacaaaccatcttcgccgctacgcgtga
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| Protein seq | MGSECWAHFEKKADNMAECRHCHNLLSYKNGTSRLNRHYQESCRKRGRQQGSHHGASAFSRSSSDDLGEQTAAAAAAEDQLIRMIALHGFPSSMVEDVEFTRFVRMLCPDFKMPSRDDVRKRCDELFDREMSSLKDAIGRTPGLASLSLGKTTTAWGKVAYLAAHFIDEEWNFHCRVIQVFKALEVEDDTTYGLSKILDIKDHIIDIPVTDWDLEDYERMLGIISHWGLLSKLSGVLIENFGTTEFGKIIYDDNGLPHLSATQHELLCATNLWWDLPDIASNLRYPFSSYGQDCLDAFEDENLKKKRRDISSHLQLDHPWTYNKWWYAYYYAIEIIHKECSSGPAKIRALAGKVIFHETWFTELLRTTLGRIYRAIKTISASSLPTSNLVLIEMLEVRDMLVVGFNNCSGRMQNSSGELSNRHEDEKVIKYVQNAIRELDSYLLESYLLLSIPLILDPRYKLVYVENFLKNFQSILEKAPSADLFSKVGEEFRQLFTEYKTQSIETDYNNENNATEHANHIHEMDVDPSIQGNGSTLQLTEQGNTSSQEHTRELEAYLQDDTVPLDQEDFDVLKWWKDNCGRYPTVARIARDFLAIPTSGRPSPQLMTEITNHLRRYA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.227471 | 0.116276 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0254550 | RBH | 0.395848 | 0.375994 | 3.440361 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15520 | RBH | 0.248162 | 0.248398 | 0.837453 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0254550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010930 | RBH | 0.230638 | 12.880753 | 3.235260 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011050 | RBH | 0.126713 | 1.626477 | 0.855432 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010900 | RBH | 0.856493 | 3.690874 | 5.695251 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010760 | RBH | 0.052877 | 0.173306 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010830 | RBH | 4.425262 | 0.000000 | 2.135042 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0142500 | SBH | 0.009835 | 0.4923515 | 0.066167 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010680 | RBH | 0.171856 | 0.250901 | 0.378517 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0149700 | RBH | 4.267497 | 7.593952 | 6.297997 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010770 | RBH | 0.448355 | 2.634545 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0011100 | RBH | 0.271833 | 0.457332 | 0.258000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010780 | RBH | 0.235202 | 1.320058 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011100 | RBH | 0.021101 | 0.315735 | 0.376226 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010880 | RBH | 0.833066 | 2.809559 | 1.115728 |
