Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0010280 | OGI:02022410 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:8019585-8021478 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gggagcggagctgagcaaagctccggccgcgacctcgagcaagacgacgatggagccaagccgcccgcgcctccctctcctcctcctcctcctccacttctcgctgctcgcctcgccgtgttccgcgcggtggcgagacggcggcggcgttggcgatctgcgcgagagcttcctccggtgcgtcgcgcggcggtcgccggcgaccgccgccgacccgtcgcggctcgtgcacgcgccgggcgacgcctcctacccgtcgctgctcgactccaccatccagaacctccgcttcgcctcgccgcggacgccccgcccggcgctggtgctcacgcccgtgaccgccgacgaggtgcgcgcctgcgtcgtctgctgccgcgcccacggcctcaccgtccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccgctcgctcggccggtccccgaggttcgccgtcgtcgacgtcgcggcgctccgggcggtgcgggtggacgcggcgaggggcgtggcgcgcgccgaggcgggggccacgcttggggagctctactacgcggtggcggaggggagcggcgggcggctcgggttccccgccggaatctgcccgacggtctgcgtcggcgggcacctcagcggcggcgggttcggcccgatgatgcgcaagtacggcctcgccgccgacaacgtggtggacgcggaggtggtggacgccgaggggaggctcctggacagggcggccatgggggagggcctcttctgggcgatcaggggcggcggcggcggcagcgtcggcatcgtcgtctcctggaccgtcaacctcgtccccgtcccggccgtcgtctccgccttcaccgtccaccgcctcctactccggcgaggtggccacgacgagcaatctctcctccgcctcctcaccaaatggcaagccgtggcgcacgctctccccgacaacctgttcgtcaaaatgtccatggaggccaagaccatcaacgacggcgacgactcaactcgtcatccattggtgacgttcaaatcattgtttcttggcaattgcagcgacatgatcacccaaatcgaccaccatttgcccgaactcggcatcaaaccaaccgattgcagggagatgaactggctgcaatccatgctgtactcctacggctacaccaatggccaaccagcagaggtgcttcttgacaggacactgcaacccaaggactactacaagatcaagctcgactacctaacctcaccaattccgacacccggcctgatcgaattgctcgccaagatcgtcgaagacgaagacggctccatcgacattgacccacaaggcggcgagatgagccggataccggaatccggcacgccgtacgctcaccggagcggatacctctacaacctgcaatactttgtcaagtggggaggtgacaagaatgtgtcctatgaggatgatcatctgagctgggtgagggggttgcatgagctgatgacaccctatgtgagcaagaaccccagggctgcatacatcaactacagggacctggatttggggcagaatgtggagggaaacacaagctatgaggaggccagggtgtggggggagaagtacttcaggggaaacttcaggaggctggcaatggtgaagggtgaggtggatcctgatcagctgttctggagtgagcagagcatccctcctctggttgtgagcacaagggatgctggattggtttcagatagctgatgatggttcagtctgcagcttgatgtatagtaagaatctgtgccttttcttcagcatatatttctccaataatgtgtgctagaaaatcaaatactcctagttcatcgaatagacaaatttttttttatcccgagtacaatttgg
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| CDS seq | atggagccaagccgcccgcgcctccctctcctcctcctcctcctccacttctcgctgctcgcctcgccgtgttccgcgcggtggcgagacggcggcggcgttggcgatctgcgcgagagcttcctccggtgcgtcgcgcggcggtcgccggcgaccgccgccgacccgtcgcggctcgtgcacgcgccgggcgacgcctcctacccgtcgctgctcgactccaccatccagaacctccgcttcgcctcgccgcggacgccccgcccggcgctggtgctcacgcccgtgaccgccgacgaggtgcgcgcctgcgtcgtctgctgccgcgcccacggcctcaccgtccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccgctcgctcggccggtccccgaggttcgccgtcgtcgacgtcgcggcgctccgggcggtgcgggtggacgcggcgaggggcgtggcgcgcgccgaggcgggggccacgcttggggagctctactacgcggtggcggaggggagcggcgggcggctcgggttccccgccggaatctgcccgacggtctgcgtcggcgggcacctcagcggcggcgggttcggcccgatgatgcgcaagtacggcctcgccgccgacaacgtggtggacgcggaggtggtggacgccgaggggaggctcctggacagggcggccatgggggagggcctcttctgggcgatcaggggcggcggcggcggcagcgtcggcatcgtcgtctcctggaccgtcaacctcgtccccgtcccggccgtcgtctccgccttcaccgtccaccgcctcctactccggcgaggtggccacgacgagcaatctctcctccgcctcctcaccaaatggcaagccgtggcgcacgctctccccgacaacctgttcgtcaaaatgtccatggaggccaagaccatcaacgacggcgacgactcaactcgtcatccattggtgacgttcaaatcattgtttcttggcaattgcagcgacatgatcacccaaatcgaccaccatttgcccgaactcggcatcaaaccaaccgattgcagggagatgaactggctgcaatccatgctgtactcctacggctacaccaatggccaaccagcagaggtgcttcttgacaggacactgcaacccaaggactactacaagatcaagctcgactacctaacctcaccaattccgacacccggcctgatcgaattgctcgccaagatcgtcgaagacgaagacggctccatcgacattgacccacaaggcggcgagatgagccggataccggaatccggcacgccgtacgctcaccggagcggatacctctacaacctgcaatactttgtcaagtggggaggtgacaagaatgtgtcctatgaggatgatcatctgagctgggtgagggggttgcatgagctgatgacaccctatgtgagcaagaaccccagggctgcatacatcaactacagggacctggatttggggcagaatgtggagggaaacacaagctatgaggaggccagggtgtggggggagaagtacttcaggggaaacttcaggaggctggcaatggtgaagggtgaggtggatcctgatcagctgttctggagtgagcagagcatccctcctctggttgtgagcacaagggatgctggattggtttcagatagctga
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| Protein seq | MEPSRPRLPLLLLLLHFSLLASPCSARWRDGGGVGDLRESFLRCVARRSPATAADPSRLVHAPGDASYPSLLDSTIQNLRFASPRTPRPALVLTPVTADEVRACVVCCRAHGLTVRARSGGHDYEGLSYRSLGRSPRFAVVDVAALRAVRVDAARGVARAEAGATLGELYYAVAEGSGGRLGFPAGICPTVCVGGHLSGGGFGPMMRKYGLAADNVVDAEVVDAEGRLLDRAAMGEGLFWAIRGGGGGSVGIVVSWTVNLVPVPAVVSAFTVHRLLLRRGGHDEQSLLRLLTKWQAVAHALPDNLFVKMSMEAKTINDGDDSTRHPLVTFKSLFLGNCSDMITQIDHHLPELGIKPTDCREMNWLQSMLYSYGYTNGQPAEVLLDRTLQPKDYYKIKLDYLTSPIPTPGLIELLAKIVEDEDGSIDIDPQGGEMSRIPESGTPYAHRSGYLYNLQYFVKWGGDKNVSYEDDHLSWVRGLHELMTPYVSKNPRAAYINYRDLDLGQNVEGNTSYEEARVWGEKYFRGNFRRLAMVKGEVDPDQLFWSEQSIPPLVVSTRDAGLVSDS |
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| Function | Berberine bridge enzyme-like Cyn d 4 [UniProtKB/Swiss-Prot:Q5QJ60] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0010280 | OsLima_02g0010280.01 | Chr02 | 8019585 | 8021478 | + | NAM | ||
| CDS seq | atggagccaagccgcccgcgcctccctctcctcctcctcctcctccacttctcgctgctcgcctcgccgtgttccgcgcggtggcgagacggcggcggcgttggcgatctgcgcgagagcttcctccggtgcgtcgcgcggcggtcgccggcgaccgccgccgacccgtcgcggctcgtgcacgcgccgggcgacgcctcctacccgtcgctgctcgactccaccatccagaacctccgcttcgcctcgccgcggacgccccgcccggcgctggtgctcacgcccgtgaccgccgacgaggtgcgcgcctgcgtcgtctgctgccgcgcccacggcctcaccgtccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccgctcgctcggccggtccccgaggttcgccgtcgtcgacgtcgcggcgctccgggcggtgcgggtggacgcggcgaggggcgtggcgcgcgccgaggcgggggccacgcttggggagctctactacgcggtggcggaggggagcggcgggcggctcgggttccccgccggaatctgcccgacggtctgcgtcggcgggcacctcagcggcggcgggttcggcccgatgatgcgcaagtacggcctcgccgccgacaacgtggtggacgcggaggtggtggacgccgaggggaggctcctggacagggcggccatgggggagggcctcttctgggcgatcaggggcggcggcggcggcagcgtcggcatcgtcgtctcctggaccgtcaacctcgtccccgtcccggccgtcgtctccgccttcaccgtccaccgcctcctactccggcgaggtggccacgacgagcaatctctcctccgcctcctcaccaaatggcaagccgtggcgcacgctctccccgacaacctgttcgtcaaaatgtccatggaggccaagaccatcaacgacggcgacgactcaactcgtcatccattggtgacgttcaaatcattgtttcttggcaattgcagcgacatgatcacccaaatcgaccaccatttgcccgaactcggcatcaaaccaaccgattgcagggagatgaactggctgcaatccatgctgtactcctacggctacaccaatggccaaccagcagaggtgcttcttgacaggacactgcaacccaaggactactacaagatcaagctcgactacctaacctcaccaattccgacacccggcctgatcgaattgctcgccaagatcgtcgaagacgaagacggctccatcgacattgacccacaaggcggcgagatgagccggataccggaatccggcacgccgtacgctcaccggagcggatacctctacaacctgcaatactttgtcaagtggggaggtgacaagaatgtgtcctatgaggatgatcatctgagctgggtgagggggttgcatgagctgatgacaccctatgtgagcaagaaccccagggctgcatacatcaactacagggacctggatttggggcagaatgtggagggaaacacaagctatgaggaggccagggtgtggggggagaagtacttcaggggaaacttcaggaggctggcaatggtgaagggtgaggtggatcctgatcagctgttctggagtgagcagagcatccctcctctggttgtgagcacaagggatgctggattggtttcagatagctga
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| Protein seq | MEPSRPRLPLLLLLLHFSLLASPCSARWRDGGGVGDLRESFLRCVARRSPATAADPSRLVHAPGDASYPSLLDSTIQNLRFASPRTPRPALVLTPVTADEVRACVVCCRAHGLTVRARSGGHDYEGLSYRSLGRSPRFAVVDVAALRAVRVDAARGVARAEAGATLGELYYAVAEGSGGRLGFPAGICPTVCVGGHLSGGGFGPMMRKYGLAADNVVDAEVVDAEGRLLDRAAMGEGLFWAIRGGGGGSVGIVVSWTVNLVPVPAVVSAFTVHRLLLRRGGHDEQSLLRLLTKWQAVAHALPDNLFVKMSMEAKTINDGDDSTRHPLVTFKSLFLGNCSDMITQIDHHLPELGIKPTDCREMNWLQSMLYSYGYTNGQPAEVLLDRTLQPKDYYKIKLDYLTSPIPTPGLIELLAKIVEDEDGSIDIDPQGGEMSRIPESGTPYAHRSGYLYNLQYFVKWGGDKNVSYEDDHLSWVRGLHELMTPYVSKNPRAAYINYRDLDLGQNVEGNTSYEEARVWGEKYFRGNFRRLAMVKGEVDPDQLFWSEQSIPPLVVSTRDAGLVSDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.388739 | 0.128309 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0235900 | RBH | 1.084031 | 1.197977 | 2.534914 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g14090 | RBH | 0.694439 | 0.783924 | 0.686007 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0235900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010100 | RBH | 0.593614 | 18.545162 | 4.433385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010180 | RBH | 0.066411 | 2.785223 | 1.409850 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010050 | RBH | 0.888494 | 19.647257 | 7.644409 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009880 | RBH | 0.298469 | 0.429950 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010020 | RBH | 7.380605 | 3.642502 | 8.025606 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0127700 | RBH | 4.681895 | 12.530417 | 2.6671415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009780 | RBH | 0.178272 | 0.878753 | 0.629148 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0131500 | RBH | 5.126483 | 4.9682685 | 4.243167 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019020 | RBH | 0.293339 | 0.238963 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009940 | RBH | 0.384812 | 7.861351 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010240 | RBH | 2.419125 | 9.990895 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010260 | RBH | 0.435550 | 2.181346 | 0.424563 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009950 | RBH | 0.213000 | 7.296699 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010160 | RBH | 0.641691 | 0.000000 | 1.867087 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009970 | RBH | 0.945689 | 34.485718 | 3.295963 |
