Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0009580 | OGI:02020810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:7275204-7277736 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taaaccttaattgtactgctaatatatcgagcatttggcacaaatcagttgacaacccagctggtaaattaattaatatatcgactgataacgccgtgtaatatattatcctgatcagacagattgtgcactggcatagaacatcgacaaaactaaagataattacattttcatcccatcgcggactccacaaataactcctcctgatgtgacccctcggatcacttatcggctacatttacaacatgtttctcatcattcgtattgttcacttcagatcagaaggtaaaaacttcagtcgtatcctcattaaaactgactattgaaaccaaaacagatgtctactgaactttctttggtcttggaacagaagtggccaattctttactagatgatctgatgatgaaaagaaccgtttccatcagcatgccaccgactaatcctaagatgcctccagcagcattctggaaagtcataaataaggttgttattataacacaactcacaaggtttggagaaagtcctgttttaaatggtttggacaaacacacaaaaaacttgtcaacattcaaaaccaggaagtcttccctgtgcctttacccactaatgtttaccagaaacaccactaagatagataatgcaactttactagcctgcttagtcatagagttttgcaggaaagaaatattatgccaacttgccaagccaacacaatatgatgccaaagatggtgcaagaggacaagagaaatagtggatgcaccatgtagtgtgtttcttgcggacttaccattacaggactgttgttgaacagagctctgaaagcaacaaatccaaccaaataacccgtgaacattataagaacaacatgaagacctgaaaatagaagcacagcaatcaattgtacagtggaataccatacaagctgatattagcagccctagctccaggctgaaggtacattaagtagtgagatttaaagaggattaagtgtgctataattggcatgctggttcacctatctacagcaaaggaagggtctaaccctgttgtacatgaaaatgctatactaaaagagttatacacagtgaaatattatcctcacagtggaaagaaactaattttattggatccatcaattgtaacacttttcaagaatgtgtactgaatagatgcctctaggtgattgaagtgaccaacaagtgcgagaacttggaagtaattagtccaacacaattgtatgcatgtgtgtgcaagctttgaaatatgcaatttactctaaacctagttagaagcaagctgacaggaattctgattatcgtagtgcaataacattataagaacaacatgaagacctgaaatagaggcaaaacaatcattggccagtgaaagccatacaagtaaatattagcagtccaagttcagagcaaaaggtacactaactagtaagatttaaagaggattaagtgtactaaaattaacacgcagattcattcacttgtctagttgtcttaccgcaaggaaagtttgaacttcattgttcatgaaaatactactccctccggtcaatattagcaaattctactaagcgcaagtcaattccactgtctgaaacatcatatatttcggtccggagggagtaatagagttgtatgcagcgaaatagtattattccttatatagttaaaagtaactaattttgttagaactaactagtcaaacatatttgcgcgactgaacagacaattacgcacacatatgtgagcgagctttaaagtgtgcattttactgtaaaccaagtcagaaactaagctagtaaaggaagttgttaatggcaatgtcatgggaatatgatgatcttggcacaaagataatggtaccaaatccaatctggtccttgtaggaggagaagagctcggggctgtcctccttcgccggcggcgcgacatccctgacgagttcggcgtactccttcctctcctgcatctccctgagcttgtccagcctcgccttcagctcatcgctctgcacagccagatcaaaccacagattaaaacaaaaacagaaacactagaattttcttttcgttgctcgatgagtgaccgaccttgtcgcgtggcttggggctggagagcaggaagtcggcgccgtggaggaggcggcggaggggcgggcgggcgccgggggaggcggcgcaccagatgtcgcggagggagcggtaggggacggcggagcgggcggcgagggaggaggcgaggtcgcggaggtcagcggggaggtcgtgggaggcggcggcggaggcgaggaaggcgcggagggggtcggtggcggcgacgacaaggcccgacgccatggccggcaatctcgatctgaaaatctcctacggagtgtagttaagtcagctgatggaggagacgggagggagcaaggcaggggtggagaaaggggtccgccgccgccggcgccgccgaatcgccggtgactttccggccgccggagccacttctgcgcctgggtgggaagacttgggaagg
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| CDS seq | atggcgtcgggccttgtcgtcgccgccaccgaccccctccgcgccttcctcgcctccgccgccgcctcccacgacctccccgctgacctccgcgacctcgcctcctccctcgccgcccgctccgccgtcccctaccgctccctccgcgacatctggtgcgccgcctcccccggcgcccgcccgcccctccgccgcctcctccacggcgccgacttcctgctctccagccccaagccacgcgacaagagcgatgagctgaaggcgaggctggacaagctcagggagatgcaggagaggaaggagtacgccgaactcgtcagggatgtcgcgccgccggcgaaggaggacagccccgagctcttctcctcctacaaggaccagattggatttggtcttcatgttgttcttataatgttcacgggttatttggttggatttgttgctttcagagctctgttcaacaacagtcctgtaatgaatgctgctggaggcatcttaggattagtcggtggcatgctgatggaaacggttcttttcatcatcagatcatctagtaaagaattggccacttctgttccaagaccaaagaaagttcagtag
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| Protein seq | MASGLVVAATDPLRAFLASAAASHDLPADLRDLASSLAARSAVPYRSLRDIWCAASPGARPPLRRLLHGADFLLSSPKPRDKSDELKARLDKLREMQERKEYAELVRDVAPPAKEDSPELFSSYKDQIGFGLHVVLIMFTGYLVGFVAFRALFNNSPVMNAAGGILGLVGGMLMETVLFIIRSSSKELATSVPRPKKVQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0009580 | OsLima_02g0009580.01 | Chr02 | 7275204 | 7277736 | - | NAM | ||
| CDS seq | atggcgtcgggccttgtcgtcgccgccaccgaccccctccgcgccttcctcgcctccgccgccgcctcccacgacctccccgctgacctccgcgacctcgcctcctccctcgccgcccgctccgccgtcccctaccgctccctccgcgacatctggtgcgccgcctcccccggcgcccgcccgcccctccgccgcctcctccacggcgccgacttcctgctctccagccccaagccacgcgacaagagcgatgagctgaaggcgaggctggacaagctcagggagatgcaggagaggaaggagtacgccgaactcgtcagggatgtcgcgccgccggcgaaggaggacagccccgagctcttctcctcctacaaggaccagattggatttggtcttcatgttgttcttataatgttcacgggttatttggttggatttgttgctttcagagctctgttcaacaacagtcctgtaatgaatgctgctggaggcatcttaggattagtcggtggcatgctgatggaaacggttcttttcatcatcagatcatctagtaaagaattggccacttctgttccaagaccaaagaaagttcagtag
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| Protein seq | MASGLVVAATDPLRAFLASAAASHDLPADLRDLASSLAARSAVPYRSLRDIWCAASPGARPPLRRLLHGADFLLSSPKPRDKSDELKARLDKLREMQERKEYAELVRDVAPPAKEDSPELFSSYKDQIGFGLHVVLIMFTGYLVGFVAFRALFNNSPVMNAAGGILGLVGGMLMETVLFIIRSSSKELATSVPRPKKVQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0009580 | OsLima_02g0009580.02 | Chr02 | 7275254 | 7277725 | - | IsoSeq | ||
| CDS seq | cttcccacccaggcgcagaagtggctccggcggccggaaagtcaccggcgattcggcggcgccggcggcggcggacccctttctccacccctgccttgctccctcccgtctcctccatcagctgacttaactacactccgtaggagattttcagatcgagattgccggccatggcgtcgggccttgtcgtcgccgccaccgaccccctccgcgccttcctcgcctccgccgccgcctcccacgacctccccgctgacctccgcgacctcgcctcctccctcgccgcccgctccgccgtcccctaccgctccctccgcgacatctggtgcgccgcctcccccggcgcccgcccgcccctccgccgcctcctccacggcgccgacttcctgctctccagccccaagccacgcgacaagagcgatg
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| Protein seq | LPTQAQKWLRRPESHRRFGGAGGGGPLSPPLPCSLPSPPSADLTTLRRRFSDRDCRPWRRALSSPPPTPSAPSSPPPPPPTTSPLTSATSPPPSPPAPPSPTAPSATSGAPPPPAPARPSAASSTAPTSCSPAPSHATRAM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 7275993 | 7277227 | - | OsLima_02g0009580.02 | OsLima_02g0009580.02,OsLima_02g0009580.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.483990 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0225300 | RBH | 1.334838 | 1.664312 | 4.440683 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13200 | RBH | 0.834384 | 1.112345 | 1.056623 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0225300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009410 | RBH | 1.211714 | 4.677597 | 7.836723 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009500 | RBH | 0.222264 | 0.0 | 1.631250 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009360 | RBH | 1.119092 | 9.832155 | 7.505575 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009180 | RBH | 0.349366 | 0.629479 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009320 | RBH | 7.917336 | 13.429720 | 8.261974 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0117200 | SBH | 1.2578195 | 3.631546 | 3.085355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009130 | RBH | 0.172316 | 0.949201 | 0.874872 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0120700 | RBH | 3.1560515 | 2.8989415 | 3.9817755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009220 | RBH | 0.809505 | 2.549896 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009520 | RBH | 1.942074 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009530 | RBH | 0.164137 | 0.529338 | 0.667252 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009260 | RBH | 0.000000 | 7.376023 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009470 | RBH | 0.521355 | 3.922476 | 1.602431 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009290 | RBH | 1.263979 | 27.193207 | 3.837960 |
