Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0007830 | OGI:02016340 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:5695404-5700163 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaaccaaggaaggaggcaacctgagatttgacacccgtagactctcccccgagcccaagcaaggcaagtcccccacaccacttcccttccctctctgcagccgaggcggcggaggagaagaggagctcgatcgatcccacccaccggcggcggcgggctagatgaaggtcaccgtgatgaccgccgacgagcagattctcaccgtcgacgtcgaccccgacgaatctgtaagcccccccgcgccgccctcccactcgtctcgatctctgtaactggggggcgtcaatcaagacgggttcctttttgggacaaattcggttcatctagtggcggaattcgttgggaattcgggtgcggagcgggcgcatttgagttgagaggcggtcagcgattcagttcttgtggtgtgttggatcgtctgttggtgtacggattggatggatctttgacaggcttcggttgtttggtttggtttagagcgtcagtcccttcgtcttcctcgtgctcttggtataatatggttgtagagctagattttgtagaataccttggaactgaattgtggtttagaatgggaaagatgcagtttttggctaaattgtgcgtgctgtgttcttgcaggtggagaatttgaaggcgcttcttgaggtggaggtgagctgggactgtaatcttgtgtgagctatgtgtttaaggctctgcagctactgggtttgatctcactgttctcacattgttggttttttggctgcttgtggacagactagtgtgcctttgcggcagcagcagcttcacttcaatggcagggagatacagaacacggataaacttagcaccgtcggagtccaggatggcgatcttgtgatgatggtgaaggttacctctaatgaaaggtctgcttgctggcattcctcgtgcataaaaagtaaattgatttgcatgacatatacttgtaaagttttttaattgagttacttaagagttttacattccgaattgaattacttaagagttttacatccttcagttcaattctggtcttactggcagttacctcctttgtagttgtccagtattactttttgcgcaataaaggatttttagtttgttaaaactgatgctatgaatcgcgatgccactaaggtttcttttctccaatttaatttgtctgggttgaaaatttcaggccatctcaggatattataagattaaaccctgatggatctgctgttgatcctcaagctttccgacaacatattcgaggtgattcacaacttatgggacaactccttcaggtaaattttactggtagcttcattactttgtggctagacagtttatatactttaatgtgcttagatatcacttggggcaaatattttcttttcttatatcggaaaacggatatttatttgcagaatgacccggcattagcacaagctattcttggtgatgacatcaatgagttgcaaaataccttgcggtcacgccatcaacaaagactagaactaaagcgcaagcaggaagaagagcttgtgagtatctaccacgagatagcattacttttaaaggaagaatattaaggaggcccttatatgttaccatgtctttgggaactaaagctgagattgtgtggtttgttcctgcatgttactcacagcacagttaaagattttctattctgcagtctttttatctaaaaaatgatttagcctttccttgcatttatataagtatatatctctatgatgtttcgtgtgcattgtattttccaaaattgcacttttgacttatcttacatatacttcaccacttcgaggcttggtagttcatgatttgttggttgtgttgtgttactgtcttattgattaacgttagaaaattcactaataaatgtgtgttttgcaggctctaatgtatgctgatccttttgatgttgaagctcagaagaaaattgaagctgcaattcggcaggtaagcatatttttttctgaaacctgttgaccgctaggtgatgattcctttcgcatatcagtggacaagtgtgagatatcatgaacatcattacaatagtgactagtgttaaggagacataaagattctttattacaaagttaagaataaacaagataacttaaatataaatttttctggctaccatgcttggatataatgaattgttcgtcacagcattctgtttttctacagttaaaaaagtaccttttctgatttcactatgattcatactttcttctctactcacctgttagaatttatccagttagatgtctgattatgatactttaatttacttgtcgcattacagaaaggtattgatgaaaactgggaggctgccttggagcacaaccctgaagcatttgctcgagtggtacgttttaccttagttttctcctgttttacgttctatgctttgtgatacttgctaaccaattagtattctgagatatcaggttatgctgtatgtggacatggaagtcaatggtgtacctttgaaggtattactctttcacatttatcctatataaccaacatactgagaattaatgcattctggtgaaatttaaatatttgagaactaatgtaggcttttgctgctctttttttgggtgcaatgttttaattcttctcactgattgtaaggatatgtttaatgttccattgttttttttttttcatcttcaggcctttgttgacagtggagcacaatcaactatcatatcaaaaagctgtgccgaacgttgcgggtacacttgcaatttaagatattggttgattggaattatttaaacttttatagtttgtatagtaattctgcatgggaagacataaatattgaatagcttactttaacatttttctctgagacgggagaaactaaatcagtttctcttgatactcaactgaaatgtacaccattgcatatttacatattgtgtatacatctgacaaagaaatatcatatgcaggttgcttaggctgcttgatcagcgatatagaggtgttgctattggcgttggtcaatcagagattcttggtagaatacatgtagccccaataaaggtatgtttgattgattcatgtacccatgccactgatattacagtgtgagagaatatattatttatatgatacaaaattcatcacctgggtagaaaacatgaaattccaggtcccatagaaaccatgtgacaagtcctagtataacccaagtctttggtgttcctttagaacctagcgatttcagttattctcatacctctacaaacttcaatggttttgcaatttgtgaatcgtgatatgtaattccgtactaattgtttagcagaagtagtttgtaatgtaaatactgacagcttgatttggacagattggccatgtcttctatccttgttcattcacagtattggatgctcccaatatggaatttctttttgggcttgatatgctgcggaaacatcaggtaatcgtgtgactaagatctggtacatgctgttgcatctaaatctgatagtctgattacacttcttactgattcttttgttatctcacacagtgcataattgacttaaaagacaatgttcttagagtaggaggtggtgaggtttcagtgcccttcttacaaggtaagtaattttgtatcaacaatgcattccatttttataaatgtagttttcatgaaggtttactgaaataaagctaccaaagaagttaatttttatagttccctcctcctagactttcatctggttatatacttatgcagttttataaatttagttcttcaaccactctgctattctatcttcagagaaagacatcccttcacatatacgtgatgaagagaaactatcgaagctagcatctctcagccaaggagctgctggagtaagctaaattagcttttgctttttttccttgaattgtgatttgtaacatcaaaatatccttatttactccatcttatccaggaatcgtcaacggcacgggagaagactcctgatgcgccaccacgagctcatactacaggttagtttgcttttgctctggtaggtctaggactgcgtaatctatgccatctgacaacttcgagctaatgagaaacctccatcttttcattttctttccaggtgctccagctgtgaatcctccgcaaccacaggtagtcgagatctcttttatttttgttaaacttttgtgcatcaaattgattctgactgtctataaaaacatctaccagggaggaggagatttcgaagcgaaagtcacgaaactggtggaacttggattcgaccgggcatccgtaatccaagctctcaagttgttcaacgggaatgaggagcaggctgctgctttcttgtttggtggttagagtcttgtgatgatgatttgagagagttctttctattgctcacgaccctttcaagggctgaacattttatacacagtgatggagggagatatcagtatatcacctcttgggcctttgtgaaactagaacttctgtttggccaatacaggcttttggtttagagatgatggttcatatttctccttccatagaaaacccattttcttgccttcagtacctgatacaaagatcatgtgcatttcgatctcatttgtttgccaatgatgtgaattattggtctcatatatatagtcctcacaggtgaactgcaatcaatgtactgtcgattgtcgagtttttctgttacaatgtgttgtcgattgtcaagcc
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| CDS seq | atgaaggtcaccgtgatgaccgccgacgagcagattctcaccgtcgacgtcgaccccgacgaatctgtggagaatttgaaggcgcttcttgaggtggagactagtgtgcctttgcggcagcagcagcttcacttcaatggcagggagatacagaacacggataaacttagcaccgtcggagtccaggatggcgatcttgtgatgatggtgaaggttacctctaatgaaaggccatctcaggatattataagattaaaccctgatggatctgctgttgatcctcaagctttccgacaacatattcgaggtgattcacaacttatgggacaactccttcagaatgacccggcattagcacaagctattcttggtgatgacatcaatgagttgcaaaataccttgcggtcacgccatcaacaaagactagaactaaagcgcaagcaggaagaagagcttgctctaatgtatgctgatccttttgatgttgaagctcagaagaaaattgaagctgcaattcggcagaaaggtattgatgaaaactgggaggctgccttggagcacaaccctgaagcatttgctcgagtggttatgctgtatgtggacatggaagtcaatggtgtacctttgaaggcctttgttgacagtggagcacaatcaactatcatatcaaaaagctgtgccgaacgttgcgggttgcttaggctgcttgatcagcgatatagaggtgttgctattggcgttggtcaatcagagattcttggtagaatacatgtagccccaataaagattggccatgtcttctatccttgttcattcacagtattggatgctcccaatatggaatttctttttgggcttgatatgctgcggaaacatcagtgcataattgacttaaaagacaatgttcttagagtaggaggtggtgaggtttcagtgcccttcttacaagagaaagacatcccttcacatatacgtgatgaagagaaactatcgaagctagcatctctcagccaaggagctgctggagaatcgtcaacggcacgggagaagactcctgatgcgccaccacgagctcatactacaggtgctccagctgtgaatcctccgcaaccacagggaggaggagatttcgaagcgaaagtcacgaaactggtggaacttggattcgaccgggcatccgtaatccaagctctcaagttgttcaacgggaatgaggagcaggctgctgctttcttgtttggtggttag
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| Protein seq | MKVTVMTADEQILTVDVDPDESVENLKALLEVETSVPLRQQQLHFNGREIQNTDKLSTVGVQDGDLVMMVKVTSNERPSQDIIRLNPDGSAVDPQAFRQHIRGDSQLMGQLLQNDPALAQAILGDDINELQNTLRSRHQQRLELKRKQEEELALMYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGVAIGVGQSEILGRIHVAPIKIGHVFYPCSFTVLDAPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSHIRDEEKLSKLASLSQGAAGESSTAREKTPDAPPRAHTTGAPAVNPPQPQGGGDFEAKVTKLVELGFDRASVIQALKLFNGNEEQAAAFLFGG |
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| Function | Protein DNA-DAMAGE INDUCIBLE 1 [UniProtKB/Swiss-Prot:Q1EBV4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0007830 | OsLima_02g0007830.01 | Chr02 | 5695404 | 5700163 | + | NAM | ||
| CDS seq | atgaaggtcaccgtgatgaccgccgacgagcagattctcaccgtcgacgtcgaccccgacgaatctgtggagaatttgaaggcgcttcttgaggtggagactagtgtgcctttgcggcagcagcagcttcacttcaatggcagggagatacagaacacggataaacttagcaccgtcggagtccaggatggcgatcttgtgatgatggtgaaggttacctctaatgaaaggccatctcaggatattataagattaaaccctgatggatctgctgttgatcctcaagctttccgacaacatattcgaggtgattcacaacttatgggacaactccttcagaatgacccggcattagcacaagctattcttggtgatgacatcaatgagttgcaaaataccttgcggtcacgccatcaacaaagactagaactaaagcgcaagcaggaagaagagcttgctctaatgtatgctgatccttttgatgttgaagctcagaagaaaattgaagctgcaattcggcagaaaggtattgatgaaaactgggaggctgccttggagcacaaccctgaagcatttgctcgagtggttatgctgtatgtggacatggaagtcaatggtgtacctttgaaggcctttgttgacagtggagcacaatcaactatcatatcaaaaagctgtgccgaacgttgcgggttgcttaggctgcttgatcagcgatatagaggtgttgctattggcgttggtcaatcagagattcttggtagaatacatgtagccccaataaagattggccatgtcttctatccttgttcattcacagtattggatgctcccaatatggaatttctttttgggcttgatatgctgcggaaacatcagtgcataattgacttaaaagacaatgttcttagagtaggaggtggtgaggtttcagtgcccttcttacaagagaaagacatcccttcacatatacgtgatgaagagaaactatcgaagctagcatctctcagccaaggagctgctggagaatcgtcaacggcacgggagaagactcctgatgcgccaccacgagctcatactacaggtgctccagctgtgaatcctccgcaaccacagggaggaggagatttcgaagcgaaagtcacgaaactggtggaacttggattcgaccgggcatccgtaatccaagctctcaagttgttcaacgggaatgaggagcaggctgctgctttcttgtttggtggttag
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| Protein seq | MKVTVMTADEQILTVDVDPDESVENLKALLEVETSVPLRQQQLHFNGREIQNTDKLSTVGVQDGDLVMMVKVTSNERPSQDIIRLNPDGSAVDPQAFRQHIRGDSQLMGQLLQNDPALAQAILGDDINELQNTLRSRHQQRLELKRKQEEELALMYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGVAIGVGQSEILGRIHVAPIKIGHVFYPCSFTVLDAPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSHIRDEEKLSKLASLSQGAAGESSTAREKTPDAPPRAHTTGAPAVNPPQPQGGGDFEAKVTKLVELGFDRASVIQALKLFNGNEEQAAAFLFGG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.186040 | 0.851285 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0198600 | RBH | 1.653833 | 1.621663 | 12.124746 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10510 | RBH | 1.070694 | 1.044172 | 2.341640 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0198600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007510 | RBH | 1.235067 | 50.856716 | 11.736581 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007660 | RBH | 0.534965 | 19.408571 | 5.339011 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0007440 | RBH | 2.033547 | 71.775871 | 18.495373 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007400 | RBH | 0.000000 | 2.217384 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007470 | RBH | 13.397573 | 82.920166 | 25.067783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0092600 | RBH | 2.8631545 | 4.4343095 | 7.2063135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007410 | RBH | 0.396265 | 2.831015 | 1.443906 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0096000 | RBH | 16.2908615 | 26.693597 | 32.3124565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007430 | RBH | 1.207952 | 33.639122 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007720 | RBH | 4.527036 | 55.163788 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007710 | RBH | 0.953103 | 5.249384 | 2.757715 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007470 | RBH | 0.544344 | 24.885202 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007570 | RBH | 0.696931 | 17.496635 | 7.929946 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0007570 | RBH | 2.126326 | 45.560062 | 12.510544 |
