Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0007550 | OGI:02015810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:5481107-5482998 | ||||||||
| Gene Symbol | SAP4, OsSAP4, ZFP185 | ||||||||||
| DNA seq | tagacccagccaaccaagcacaatccggcaaacttctttgaacatacatgaatttgaatgcgcaccagataaaggtgcatacataaataatctttaaggaaaaatgaataatggacatgttggcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggacatagtacatcacagagctagctaaatgagacaccacaatactgaccgaaaaccaccaagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggatgaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgtagcagccgacaagaaggaagtgtgaggatagagcagcaaaggtggatgttgaaatcttgtaggttgcaatccattccacgcccctagccgccttagatcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagccgcagtccggtagtcgaactggcattcatgcttgtcagagtagcggtgcaacgcacagtacatgttaccgcaccggcagttgaatcccgtcagcccaaccctcttcctacaggtagcgcaccggttcggcccttccttgaccttggggactacagcaacctcctcgctggtgcccgcaacatcggtaggctgcacaacgagcgtcttcgcctcgacctgagccactgccaccgccgtgctaccactggcagcaacaatatgctccttcccaccgtcacaaccattgacaatgctatcgatggaggaggcagcaagcttggcctgctcctccttcatgatcatctccttgtggcacttggagcacatgttcatggtcgccgcgctgccaaagaagccacagttattgatgcaaaggattgggccctcgggctgctggcagccagcctccttgtgttccatcgcaactgtgatctgttcatcaaacaaacaatgcaaaactcaataccgaaatgcgtataagaaacaaatttaaaatttaacatacggataaatcaactagtgtccaattaaatcgggcggtaagataatccaagaagcacctagttgctacaattttcctatcgaaatttccatataattgtgacttttaaaataacctataacccactgcggcgagcttacactttatgaaacaagatcctaatttctatgaggcgcaacgaaatcgccatcacaaaagtggattcctcatcttatcaaccaaacgcgcctatccatttcgacgaaatcaaattcaaacaccgtaaatctgctgtaacacgttttacccactcacatttaccccgagtaatgattaatcgcccacggttatacaacaaatcaaccccaaaaaaagatcaggaaactcacgcgaatctaatcatttcaacctgaaagatcacatagcctaatacacaaccgaaaaaaaaatcaaacataaacgctttcccctcgagcccaataaccaataaccaaccacatcaaataccaaatcaaacaacgaccccccacatcagatccccgcaccaacccaaaaccgatcccccctccccaacaccagcaccacgcggatcgatcgatcgaatcgaatcgaccccaagaaaaaaacaaaaaaaagaaaaagaaacccacagatcaaacgggtcacccacaaactcaaggggggggggtggaatcaggcagggggagcaagagggcaaaccctaaccctggtcgcggcggcggcggaggccgaggcggcggtggcggaggaggcgtgcggggattggaatcgcgagctcggtgcgcgtggtggcgtctcgtctctctctctctctctctctctctctcttcaggggaaggt
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| CDS seq | atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataactgtggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatgatcatgaaggaggagcaggccaagcttgctgcctcctccatcgatagcattgtcaatggttgtgacggtgggaaggagcatattgttgctgccagtggtagcacggcggtggcagtggctcaggtcgaggcgaagacgctcgttgtgcagcctaccgatgttgcgggcaccagcgaggaggttgctgtagtccccaaggtcaaggaagggccgaaccggtgcgctacctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgtgcgttgcaccgctactctgacaagcatgaatgccagttcgactaccggactgcggctagggatgccatcgccaaggccaacccagtggtgaaggctgagaagctcgacaagatctaa
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| Protein seq | MEHKEAGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKEEQAKLAASSIDSIVNGCDGGKEHIVAASGSTAVAVAQVEAKTLVVQPTDVAGTSEEVAVVPKVKEGPNRCATCRKRVGLTGFNCRCGNMYCALHRYSDKHECQFDYRTAARDAIAKANPVVKAEKLDKI |
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| Function | Zinc finger A20 and AN1 domain-containing stress-associated protein 4 [UniProtKB/Swiss-Prot:Q6H7P8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0007550 | OsLima_02g0007550.01 | Chr02 | 5481107 | 5482998 | - | NAM | ||
| CDS seq | atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataactgtggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatgatcatgaaggaggagcaggccaagcttgctgcctcctccatcgatagcattgtcaatggttgtgacggtgggaaggagcatattgttgctgccagtggtagcacggcggtggcagtggctcaggtcgaggcgaagacgctcgttgtgcagcctaccgatgttgcgggcaccagcgaggaggttgctgtagtccccaaggtcaaggaagggccgaaccggtgcgctacctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgtgcgttgcaccgctactctgacaagcatgaatgccagttcgactaccggactgcggctagggatgccatcgccaaggccaacccagtggtgaaggctgagaagctcgacaagatctaa
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| Protein seq | MEHKEAGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKEEQAKLAASSIDSIVNGCDGGKEHIVAASGSTAVAVAQVEAKTLVVQPTDVAGTSEEVAVVPKVKEGPNRCATCRKRVGLTGFNCRCGNMYCALHRYSDKHECQFDYRTAARDAIAKANPVVKAEKLDKI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0007550 | OsLima_02g0007550.02 | Chr02 | 5481129 | 5482977 | - | IsoSeq | ||
| CDS seq | atgttaaattttaaatttgtttcttatacgcatttcggtattgagttttgcattgtttgtttgatgaacagatcacagttgcgatggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataactgtggcttctttggcagcgcggcga |
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| Protein seq | MLNFKFVSYTHFGIEFCIVCLMNRSQLRWNTRRLAASSPRAQSFASITVASLAARR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.304659 | 1.016863 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0195600 | RBH | 5.099744 | 3.869987 | 30.940166 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10200 | RBH | 3.117307 | 2.179319 | 6.967155 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0195600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007240 | RBH | 2.189998 | 62.077812 | 17.585018 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007390 | RBH | 0.690467 | 21.874628 | 11.167892 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0007170 | RBH | 1.748349 | 80.375374 | 26.357828 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007130 | RBH | 0.479274 | 2.434666 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007200 | RBH | 25.175697 | 100.192940 | 44.969532 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0089300 | RBH | 33.9160725 | 38.406042 | 97.4200745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007140 | RBH | 1.121091 | 7.122814 | 5.516243 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0092200 | RBH | 41.5331665 | 48.2869335 | 76.3066215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022280 | RBH | 4.095725 | 3.956988 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007160 | RBH | 1.707220 | 34.148857 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007450 | RBH | 18.980825 | 118.448044 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007440 | RBH | 1.915698 | 3.533212 | 6.363172 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007200 | RBH | 1.672680 | 35.359165 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007290 | RBH | 2.007326 | 17.215145 | 10.533183 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0007280 | RBH | 3.355247 | 64.880089 | 43.110905 |
