Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0007220 | OGI:02015190 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:5208137-5210812 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggggctcgccggcgacgactcctcattcttcggggacgacggcgacggcgatgagttctgctacgggccgttcgacgtcgaggatctctgctacggcgcctccgatgtcgacgacgattgggaggagttctgcgacggccccttcggcggcggcggcgtggaggagttctgcgtctccggtttctccgtccgcgacctctccgacgcgtcatcctccggcgcccgcgagacgggcgacccccacgacgacgatcccctcccccaaaccctagcccgctccctcgactccgacggcgacctctccgccaccctccaccagatcgtgtccgcgatgcgcctctccgaggacgaagaggaggaggaggaggaggagctactggtcctcggccacggccacggcgtcggcatcggcggcggcggcgacgtagatgggttcatggtgagcgccttcgatctcgacacagcgatggccattgggggcatcctcgaggacatccacgaggtgatgggcgccgatgaggtacgggaagaggtggtggtggaggaggaggaggccggcaatggcggggggatcatgccgaatggattcgagttcgggccgccgccgcgggccatcagtggcaccgccgcgggattccggatgatggtggacgccgatgacactgactccgatgacttccagtttgtcgaggtactcggaggaggacaggtcagggaggccggtgccggcatgagcatgcggccctcgcgtgcgtcccaattggtggtggagagcttgccggaggcgacgctcagtgaagaggaggcctctcgtggctgcgccgtgtgcaaggactgttttgcgtcggggcagatcgtcgccttgctcccgtgcaagcattacttccatggggactgtatctggccatggttagctatcaggaccacttgccctgtctgccggcaccaagttcgcactgaagatgacgattatgaacaacgtatggctcggcgcgtgattgttctagcagcagtggagcatcagggtgcaccggcacaggtatgatgttgacatttagtggaaaagatcttaggtgcactttcatggcggtggcttacagcatgcatcttcataattttttaaaaaaatttgtatttgctctcttttaaaaaaacgaattggacttcaatggtcaatataaaatagtgaaactgcaaagtatttatagttaagtggtttgactaaatttcaatgctaatgtaattattggtgtgctggatattgcctgtctatttgcttattccaaatgtacatttgaattttgaaactcaggaatgaacaattagggatatttaattgtaagctctgttggctaaacatgcccacatattaagttatgaactggagaaagcataggaagcctttagggaaaccagaagttaagagctcatattaagtcatagaagaagccttgaggataaaatgcatgagcagaaaaccactgttcttaattttaaccaaagcaaacagtgaggacctgtgcaacttctctgattgtgtctgtaaggctgtaatggcaggtgacatgattggttcatgtatactgatgtaccagttcgaatgctaatttcattaaccgttgtgaaagcaattggattttactaaacctgatctgagaatttacctctcccttgcaaacatttcaggggactgtggacctttatttttaatgataggtttcccttgatcgaacctatttatgggaccaaattgaaacactgtgaaagtcattatattttactaaacttgagtattttcatccttgcaaacattgcgcttgccctttgtttttcagcataggtcacacttgacccaacgtttgggaccaacttgctggcatattcttagtctgttgtttttacaacaggtagcaatgctaattaggaggcttgtttgacaccagtcaccagtcaccacctgtcttttccaggaatgatatagttgttggcagtctctgtcgatgttatcattttactcggtcttatctttcaaatttagtaaagcacatggtacgattaaactgctgtgttgtaatgtgatgtattgcctcctacattgacagggctgtggagacagcgcaaccatgggtgctgaaggcgcaagtgaatgtgtggtagaaaatggacctgagaaaacttcatcttgatgcggtcccagtatttggtatgatgatcaggaagctaagacaagaaactgaactgacgtaggtagagggaccccccaactcccttggaatgttggcaggaaaactgtaccggcatccaacattttggctaacactcagcatattgttgtcctatgatatgctgtaaatgtacaaaactaagtagttcgatccactcattttctcgttcttcggctcgtatgaatgatgagttgtcggttatcttcaaggctcttgcactaatctgattagctacagttcctttttcttgtttctgaagctgaaaacagacttccccttcgaatgcatgatttgtaatggttgggatttgttgaatcttttatcagatcgcccaggagattgcttctgacatgtgatagctaccccaaatgttgtctctctgacaagttgtctgtctgacaaattgagatgggtttaattgtttttatgacgcattagatgggttt
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| CDS seq | atggcggggctcgccggcgacgactcctcattcttcggggacgacggcgacggcgatgagttctgctacgggccgttcgacgtcgaggatctctgctacggcgcctccgatgtcgacgacgattgggaggagttctgcgacggccccttcggcggcggcggcgtggaggagttctgcgtctccggtttctccgtccgcgacctctccgacgcgtcatcctccggcgcccgcgagacgggcgacccccacgacgacgatcccctcccccaaaccctagcccgctccctcgactccgacggcgacctctccgccaccctccaccagatcgtgtccgcgatgcgcctctccgaggacgaagaggaggaggaggaggaggagctactggtcctcggccacggccacggcgtcggcatcggcggcggcggcgacgtagatgggttcatggtgagcgccttcgatctcgacacagcgatggccattgggggcatcctcgaggacatccacgaggtgatgggcgccgatgaggtacgggaagaggtggtggtggaggaggaggaggccggcaatggcggggggatcatgccgaatggattcgagttcgggccgccgccgcgggccatcagtggcaccgccgcgggattccggatgatggtggacgccgatgacactgactccgatgacttccagtttgtcgaggtactcggaggaggacaggtcagggaggccggtgccggcatgagcatgcggccctcgcgtgcgtcccaattggtggtggagagcttgccggaggcgacgctcagtgaagaggaggcctctcgtggctgcgccgtgtgcaaggactgttttgcgtcggggcagatcgtcgccttgctcccgtgcaagcattacttccatggggactgtatctggccatggttagctatcaggaccacttgccctgtctgccggcaccaagttcgcactgaagatgacgattatgaacaacgtatggctcggcgcgtgattgttctagcagcagtggagcatcagggtgcaccggcacagggctgtggagacagcgcaaccatgggtgctgaaggcgcaagtgaatgtgtggtagaaaatggacctgagaaaacttcatcttga
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| Protein seq | MAGLAGDDSSFFGDDGDGDEFCYGPFDVEDLCYGASDVDDDWEEFCDGPFGGGGVEEFCVSGFSVRDLSDASSSGARETGDPHDDDPLPQTLARSLDSDGDLSATLHQIVSAMRLSEDEEEEEEEELLVLGHGHGVGIGGGGDVDGFMVSAFDLDTAMAIGGILEDIHEVMGADEVREEVVVEEEEAGNGGGIMPNGFEFGPPPRAISGTAAGFRMMVDADDTDSDDFQFVEVLGGGQVREAGAGMSMRPSRASQLVVESLPEATLSEEEASRGCAVCKDCFASGQIVALLPCKHYFHGDCIWPWLAIRTTCPVCRHQVRTEDDDYEQRMARRVIVLAAVEHQGAPAQGCGDSATMGAEGASECVVENGPEKTSS |
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| Function | E3 ubiquitin-protein ligase RING1 [UniProtKB/Swiss-Prot:P0CH30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0007220 | OsLima_02g0007220.01 | Chr02 | 5208137 | 5210812 | + | NAM | ||
| CDS seq | atggcggggctcgccggcgacgactcctcattcttcggggacgacggcgacggcgatgagttctgctacgggccgttcgacgtcgaggatctctgctacggcgcctccgatgtcgacgacgattgggaggagttctgcgacggccccttcggcggcggcggcgtggaggagttctgcgtctccggtttctccgtccgcgacctctccgacgcgtcatcctccggcgcccgcgagacgggcgacccccacgacgacgatcccctcccccaaaccctagcccgctccctcgactccgacggcgacctctccgccaccctccaccagatcgtgtccgcgatgcgcctctccgaggacgaagaggaggaggaggaggaggagctactggtcctcggccacggccacggcgtcggcatcggcggcggcggcgacgtagatgggttcatggtgagcgccttcgatctcgacacagcgatggccattgggggcatcctcgaggacatccacgaggtgatgggcgccgatgaggtacgggaagaggtggtggtggaggaggaggaggccggcaatggcggggggatcatgccgaatggattcgagttcgggccgccgccgcgggccatcagtggcaccgccgcgggattccggatgatggtggacgccgatgacactgactccgatgacttccagtttgtcgaggtactcggaggaggacaggtcagggaggccggtgccggcatgagcatgcggccctcgcgtgcgtcccaattggtggtggagagcttgccggaggcgacgctcagtgaagaggaggcctctcgtggctgcgccgtgtgcaaggactgttttgcgtcggggcagatcgtcgccttgctcccgtgcaagcattacttccatggggactgtatctggccatggttagctatcaggaccacttgccctgtctgccggcaccaagttcgcactgaagatgacgattatgaacaacgtatggctcggcgcgtgattgttctagcagcagtggagcatcagggtgcaccggcacagggctgtggagacagcgcaaccatgggtgctgaaggcgcaagtgaatgtgtggtagaaaatggacctgagaaaacttcatcttga
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| Protein seq | MAGLAGDDSSFFGDDGDGDEFCYGPFDVEDLCYGASDVDDDWEEFCDGPFGGGGVEEFCVSGFSVRDLSDASSSGARETGDPHDDDPLPQTLARSLDSDGDLSATLHQIVSAMRLSEDEEEEEEEELLVLGHGHGVGIGGGGDVDGFMVSAFDLDTAMAIGGILEDIHEVMGADEVREEVVVEEEEAGNGGGIMPNGFEFGPPPRAISGTAAGFRMMVDADDTDSDDFQFVEVLGGGQVREAGAGMSMRPSRASQLVVESLPEATLSEEEASRGCAVCKDCFASGQIVALLPCKHYFHGDCIWPWLAIRTTCPVCRHQVRTEDDDYEQRMARRVIVLAAVEHQGAPAQGCGDSATMGAEGASECVVENGPEKTSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.075331 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0191500 | RBH | 0.0 | 0.0 | 0.742802 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09820 | RBH | 0.0 | 0.0 | 0.176830 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0191500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006910 | RBH | 0.0 | 1.531895 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007070 | RBH | 0.074994 | 0.625712 | 0.885598 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006850 | RBH | 0.261419 | 0.000000 | 1.641220 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006790 | RBH | 0.0 | 0.135753 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006850 | RBH | 0.0 | 0.0 | 1.039933 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0085700 | RBH | 0.2504175 | 1.0701515 | 0.9465765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006800 | RBH | 0.0 | 0.198881 | 0.328014 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0088400 | RBH | 0.139651 | 0.8072155 | 2.976927 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006810 | RBH | 0.0 | 7.479320 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007100 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007110 | RBH | 0.0 | 0.0 | 0.071360 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006850 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006960 | RBH | 0.0 | 0.000000 | 0.217428 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006930 | RBH | 0.0 | 5.250437 | 2.866534 |
