Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0007200 | OGI:02015160 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:5197571-5200822 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgccggcgccatggccgacgccacgcaccgtcaggcaagccgccgagctccacgcccgcctcaccacctccggccacctcctcctccacccgccatccgcccgccacctcctcaactccctcgtcaactgcctcgagccccatcccctccacctccgctacgccctccacctgttcgaccgaatgcccccctccaccttcctcttcgacaccgccctccgcgcctgctcccgcgccggctccgatccacaccgccccttcctcctcttccgccgtatgcgccgcgcgggcgtccgccccgacggcttcacgttccacttcctgttcaagtgctcctcctcctcctcccgcccccactccctcctcctgtgcacgatgctgcacgccgcctgcctgcgcaccatgctaccatccgccgcgccgttcgtctcgaattctctcatccacatgtacattcggctcgggctcgctgccgacgctcgccgagcttttgatgagatccatgtcaaggacgcggttgcctggacaatgctgatcagtgggctggccaaaatgggcatgctctgtgacgcgcagcttcttctatctcaggctccagtgagggatgtgatctcgtggacaagcttgattgccgcctactcccgtgccaatcgggccagagaggctgtgggttgcttcaagaccatgctttctcatggcattgcaccggacgaggttaccgtaatcgccgtgctctcggcatgcgcaaagctcaaggatttggagctgggacgttccctgcacttgcttgtcgaggagaaggggatgccgacgagtgaaaatctcgtggttgcgctcatcgacatgtatgccaagtgtggtgattttggtcatgcgcaacaggttttcgatgccctgggtagaggcccaaggcctcaatcatgaaatgctatcattgatggatactgcaagcatgggcatgttgatgttgcacggtctctgtttgatgaaatggaggtccgtgatatcatcacattcaactcgatgatgactgggtacatccacagtggccagcttagagaagcattgctattgttcatgagtatgaggagacatgacctgcgtgtcgacaactttacggtggtgaatcttctaactgcttgcgcaagcttaggtgcattacaacagggcagggcattgcatgcttgcattgagcagaggctggtggaagcagatatataccttggtactgcactgctggacatgtatatgaaatgtgggagggtcgacgaggcaaccattgttttccaacggatgggcaagagagatgttcatacttggaccgctatgatcgcaggtcttgcattcaatgggatgggtaaggctgctctggagcatttctaccagatgaggtgtgatggcttccagcctaattcagttagctacattgctgttctgactgcatgcagccactcatgtctactgaatgaaggccgtctgtactttgatgaaatgagaatcttgtacaacatacatcctcagattgagcactatggctgcatgattgatctgctgggacgcagtgggcttttggatgaagcaatggatcttgtcaagaccatgcccatacaaccaaatgctgtcatatgggcctccattttgagtgcttgcagagtccataaacacattgacttagctcaatgtgccgcagagcatcttctgaagctagaacctgacgaggatggtgtctatgtccagttatataacatatacatagactctagacaatgggaaaatgcgtcaaagataaggatgttgatggaagaaaggcaagttaagaagactgcaggatatagttctattactgtggctgggcaggtgcacaagtttgttgttagtgacaaatcacatccacggatattggaaatcattgcaatgctggaggagatttcacacaggttaaagtcattgggttattcaccgcttacatcacagataacagtggatgtggatgaggaagagaaagaacaaccgctgctagcacacagtgagaagctggccattgcttttggcctcattagtctagcaccaaacttgccggttcatatcagaaagaatctgagggtatgtgaggactgccactctgcaatcaagttgatttccaggctttggaaccgggaaatcatagtcagagaccggagtaggttccaccatttcagagagggaacatgttcatgcaacgatttttggtaaataccatttcataggacaccaatttttgtgtgtgaaaaagctgaggttgaggaacactgtgaacaggagttctcacctagtctccttagtttggaattgcttttgaatttctgatcaccaaaggtactctttcttctccttaattagattcttgttgccattttgatactctaataccagtaatatgcgttttcagtaaaatgatgtcagctgtgtcgagcatcacaatgctctccgttcatcctcaaggttggtagttgatgggctttgtgggtcgtcaaaatcttttggatgggccggcacaccgcctctggggcagttcaggggcaaagtgccaagaccaagacggaaagcaaacgcaataggccagcagcaggcagattgtcagaagggtcatcttcctcctgccacccagccgctgtgatgctcgtatgactaatcccgtcatccctggcttccgctcacttaaggtaaaaaatccaaatatcgctggctcatcctgccccgcctaaaagtaggagcatatgtcattattctgtttaccagtttggattgcgctcttttttttttgtcccctaatttcttctgtttgttggatgactgatgtccataactggagtagtggagtagtaatgattaacaaataattagttcttcaggagcctcaagaaatccatgtttctgaaaatgatcttatccaattgtaagctcaaaaagtgtgttttttaggtgaacatgatacagattgccctcgtatagccctatgttttcctctttcagtgaagcaaaatccatgctttttagcaaggtctactcccatgcctgcaataccagatgatgtaatatgcaatggaaattccagtgcagaatactaattctttgctgtttggtgtggacaatgggacaacattcaagacggaatcaggctattcgagcattggtaattttggtttctgtgggaatgctttcctggaatcattgatgcatctggtggatcctttagcagttcagagttga
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| CDS seq | atgccgccggcgccatggccgacgccacgcaccgtcaggcaagccgccgagctccacgcccgcctcaccacctccggccacctcctcctccacccgccatccgcccgccacctcctcaactccctcgtcaactgcctcgagccccatcccctccacctccgctacgccctccacctgttcgaccgaatgcccccctccaccttcctcttcgacaccgccctccgcgcctgctcccgcgccggctccgatccacaccgccccttcctcctcttccgccgtatgcgccgcgcgggcgtccgccccgacggcttcacgttccacttcctgttcaagtgctcctcctcctcctcccgcccccactccctcctcctgtgcacgatgctgcacgccgcctgcctgcgcaccatgctaccatccgccgcgccgttcgtctcgaattctctcatccacatgtacattcggctcgggctcgctgccgacgctcgccgagcttttgatgagatccatgtcaaggacgcggttgcctggacaatgctgatcagtgggctggccaaaatgggcatgctctgtgacgcgcagcttcttctatctcaggctccagtgagggatgtgatctcgtggacaagcttgattgccgcctactcccgtgccaatcgggccagagaggctgtgggttgcttcaagaccatgctttctcatggcattgcaccggacgaggttaccgtaatcgccgtgctctcggcatgcgcaaagctcaaggatttggagctgggacgttccctgcacttgcttgtcgaggagaaggggatgccgacgagtgaaaatctcgtggttgcgctcatcgacatgtatgccaagtgtggtgattttggtcatgcgcaacagcatgggcatgttgatgttgcacggtctctgtttgatgaaatggaggtccgtgatatcatcacattcaactcgatgatgactgggtacatccacagtggccagcttagagaagcattgctattgttcatgagtatgaggagacatgacctgcgtgtcgacaactttacggtggtgaatcttctaactgcttgcgcaagcttaggtgcattacaacagggcagggcattgcatgcttgcattgagcagaggctggtggaagcagatatataccttggtactgcactgctggacatgtatatgaaatgtgggagggtcgacgaggcaaccattgttttccaacggatgggcaagagagatgttcatacttggaccgctatgatcgcaggtcttgcattcaatgggatgggtaaggctgctctggagcatttctaccagatgaggtgtgatggcttccagcctaattcagttagctacattgctgttctgactgcatgcagccactcatgtctactgaatgaaggccgtctgtactttgatgaaatgagaatcttgtacaacatacatcctcagattgagcactatggctgcatgattgatctgctgggacgcagtgggcttttggatgaagcaatggatcttgtcaagaccatgcccatacaaccaaatgctgtcatatgggcctccattttgagtgcttgcagagtccataaacacattgacttagctcaatgtgccgcagagcatcttctgaagctagaacctgacgaggatggtgtctatgtccagttatataacatatacatagactctagacaatgggaaaatgcgtcaaagataaggatgttgatggaagaaaggcaagttaagaagactgcaggatatagttctattactgtggctgggcaggtgcacaagtttgttgttagtgacaaatcacatccacggatattggaaatcattgcaatgctggaggagatttcacacaggttaaagtcattgggttattcaccgcttacatcacagataacagtggatgtggatgaggaagagaaagaacaaccgctgctagcacacagtgagaagctggccattgcttttggcctcattagtctagcaccaaacttgccggttcatatcagaaagaatctgagggtatgtgaggactgccactctgcaatcaagttgatttccaggctttggaaccgggaaatcatagtcagagaccggatgcagaatactaattctttgctgtttggtgtggacaatgggacaacattcaagacggaatcaggctattcgagcattggtaattttggtttctgtgggaatgctttcctggaatcattgatgcatctggtggatcctttagcagttcagagttga
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| Protein seq | MPPAPWPTPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDAQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQPLLAHSEKLAIAFGLISLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRMQNTNSLLFGVDNGTTFKTESGYSSIGNFGFCGNAFLESLMHLVDPLAVQS |
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| Function | Pentatricopeptide repeat-containing protein At1g08070, chloroplastic [UniProtKB/Swiss-Prot:Q9LN01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0007200 | OsLima_02g0007200.01 | Chr02 | 5197571 | 5200822 | + | NAM | ||
| CDS seq | atgccgccggcgccatggccgacgccacgcaccgtcaggcaagccgccgagctccacgcccgcctcaccacctccggccacctcctcctccacccgccatccgcccgccacctcctcaactccctcgtcaactgcctcgagccccatcccctccacctccgctacgccctccacctgttcgaccgaatgcccccctccaccttcctcttcgacaccgccctccgcgcctgctcccgcgccggctccgatccacaccgccccttcctcctcttccgccgtatgcgccgcgcgggcgtccgccccgacggcttcacgttccacttcctgttcaagtgctcctcctcctcctcccgcccccactccctcctcctgtgcacgatgctgcacgccgcctgcctgcgcaccatgctaccatccgccgcgccgttcgtctcgaattctctcatccacatgtacattcggctcgggctcgctgccgacgctcgccgagcttttgatgagatccatgtcaaggacgcggttgcctggacaatgctgatcagtgggctggccaaaatgggcatgctctgtgacgcgcagcttcttctatctcaggctccagtgagggatgtgatctcgtggacaagcttgattgccgcctactcccgtgccaatcgggccagagaggctgtgggttgcttcaagaccatgctttctcatggcattgcaccggacgaggttaccgtaatcgccgtgctctcggcatgcgcaaagctcaaggatttggagctgggacgttccctgcacttgcttgtcgaggagaaggggatgccgacgagtgaaaatctcgtggttgcgctcatcgacatgtatgccaagtgtggtgattttggtcatgcgcaacagcatgggcatgttgatgttgcacggtctctgtttgatgaaatggaggtccgtgatatcatcacattcaactcgatgatgactgggtacatccacagtggccagcttagagaagcattgctattgttcatgagtatgaggagacatgacctgcgtgtcgacaactttacggtggtgaatcttctaactgcttgcgcaagcttaggtgcattacaacagggcagggcattgcatgcttgcattgagcagaggctggtggaagcagatatataccttggtactgcactgctggacatgtatatgaaatgtgggagggtcgacgaggcaaccattgttttccaacggatgggcaagagagatgttcatacttggaccgctatgatcgcaggtcttgcattcaatgggatgggtaaggctgctctggagcatttctaccagatgaggtgtgatggcttccagcctaattcagttagctacattgctgttctgactgcatgcagccactcatgtctactgaatgaaggccgtctgtactttgatgaaatgagaatcttgtacaacatacatcctcagattgagcactatggctgcatgattgatctgctgggacgcagtgggcttttggatgaagcaatggatcttgtcaagaccatgcccatacaaccaaatgctgtcatatgggcctccattttgagtgcttgcagagtccataaacacattgacttagctcaatgtgccgcagagcatcttctgaagctagaacctgacgaggatggtgtctatgtccagttatataacatatacatagactctagacaatgggaaaatgcgtcaaagataaggatgttgatggaagaaaggcaagttaagaagactgcaggatatagttctattactgtggctgggcaggtgcacaagtttgttgttagtgacaaatcacatccacggatattggaaatcattgcaatgctggaggagatttcacacaggttaaagtcattgggttattcaccgcttacatcacagataacagtggatgtggatgaggaagagaaagaacaaccgctgctagcacacagtgagaagctggccattgcttttggcctcattagtctagcaccaaacttgccggttcatatcagaaagaatctgagggtatgtgaggactgccactctgcaatcaagttgatttccaggctttggaaccgggaaatcatagtcagagaccggatgcagaatactaattctttgctgtttggtgtggacaatgggacaacattcaagacggaatcaggctattcgagcattggtaattttggtttctgtgggaatgctttcctggaatcattgatgcatctggtggatcctttagcagttcagagttga
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| Protein seq | MPPAPWPTPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDAQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQPLLAHSEKLAIAFGLISLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRMQNTNSLLFGVDNGTTFKTESGYSSIGNFGFCGNAFLESLMHLVDPLAVQS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.036527 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0191200 | RBH | 0.216657 | 0.329044 | 0.265207 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09800 | RBH | 0.139627 | 0.210905 | 0.065060 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0191200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006890 | RBH | 0.102029 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007050 | RBH | 0.000000 | 0.0 | 0.120849 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006830 | RBH | 0.0 | 0.0 | 0.501589 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006770 | RBH | 0.052518 | 0.009151 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006830 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0085500 | RBH | 0.3754975 | 1.95957 | 0.4074305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006770 | RBH | 0.000000 | 0.137621 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0088200 | RBH | 0.407922 | 1.411925 | 1.862652 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007080 | RBH | 0.0 | 3.798480 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007080 | RBH | 0.024137 | 0.282689 | 0.191547 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006830 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006940 | RBH | 0.123432 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006910 | RBH | 0.0 | 0.0 | 0.0 |
