Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0007010 | OGI:02014870 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:5075783-5078973 | ||||||||
| Gene Symbol | OsFbox070, OsFbox70, Os_F0151 | ||||||||||
| DNA seq | atgaatggcggtttcccgcgcggcaagcgcgggcggaacgccaccgcaaccgctggcccagactttctcagcgccctccccgagggtatcctccaccacatcatgtccttcctgaacgtgcgccaggtcattcagacgtgcgtgctgtcgtggcggtggcgcgacctctggcgctccgtgccccgcatcaacgccaactactgcgagctcagcatgtccccgatcgccgccttcacaccagacaacgaggcggcgttcaagaggttcgtcaaccggctgctcgagcgccgcgaccccgccgccgtcatccacaccttcaacctcagatacaccatttccaacccaaacaaccgcgataacgactcggcggacgccaacaggtggatcagccacgcgttgcagaatcaagctagtttcctcaagatcatcgtggatgcgcacgaattgcacctcgatcacacggtgttcacatcatgctacttgggtagaatcactctcaagaatgtgttcttggaccaaggcttcttcgagcagctggagattggctgcccactgctgcaggatctcctcttgtacgactgcatcattggagatgatgagatctcatctgagaccctgaatgttctcaccatgtatggatgtcagttcccaactctgcaggagagctgcatttctgcgccgaatctgacatctctgatcatgcatcagcctgagaacttcgtgcccgtactggacgacgtcgcgtcgctggtgacggcaacagttgacctgtttcctctcatcgaattttgtgcttatgacatgcgccagttgctctggagcctttctggtgttagaaatttggacctcgattactatgcgtgtaaggtaatgcttattgatcttacatattccctcttgtttagcttggtacttaacagttgtaatagaaaatgcaacctgtctctgacttctcggtgattctttttcttttaattatgttgccgttactagcgtatataagtgagaaataaaaaaggtgacgtagagatggaaaatgcgaatgaaatctttaaatatatattattttattgtaattttgtgtatatacatatatatgttttaaaaatatttaaagaaatatacattccccgtgtggtagaggcacgtgggaacgatgggaggggaggtggcgtggagccaacacacgcgtgcgccatcgcagtggccggcactgaagcatatggtcccgtgcgaccaatccgttggaccatgtcggtccaacgtgaccaatccgttggaccgcccctccatcagtttcatgccttcgagctacgtcgacggtgcggtagcgtggcccgaacccatggagaatgtatagttccacaaatattttaaaaatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtaaaattatgaacaataatgtatattttaaattttagttctggaaaatgcttcaactattgttaaaacatgcactcccacaaccacctgatggattacttcagcaattgttgatccacagtgtagtgggacatttaactatttaccacttttaagacgtggtatttaataatttgctactcataatctgtgacatgtggattcagtggcaaattattaaatgccacatttaagagtggcaaataattaaatatctcagtagtatttagttatcttactttcatagagactagaaaaggcgataagtttgcatatatgggtgttccagtttctaggtctcgtttttcatgtgcatgcttcctaatctattaaacggtacaatttttgtaaaaagttcttagggaagttcctttagaaaaaaaatcatatcaatccatttttaaagtttttagttgatacttaattaatcatgcactaatctaccgctccattttgcttgtttgaagggttagttcccaacatatactaacgaacacaatgagctacctgactttgaggaagttttgtatataatttggtataggtgtattgtgaccttctaagagcaagtttaatagtatagtcaactactacctttaaaaattggcacatcatctataacaactttaatagcctacctatacaatagttttatataaatacatgatgcaccattattatttgacccacctctacacatataatattttagagtccaatctgtagcccatttttcttcgaatttgttttgaaaatatattattttaatgaaaaattaaaaaatagaagctgttcggctacaatctcaagtttaataccctgtcgaacaaccgcagttggacagggttgttggtccactaaaaaaaataaaaagtacatgaaagggcattggcagggggcctattgaactctgatgttcgataggtcctacatgcacacagtggcgtacagtggttgttctcttttttatttacttttttttatcccctgtcgatatataccctgttgaactttgcttgtttgatgggcgctaaacttgtaattttagtctgttaacctctattttgcaattctctattaaaaaggtattatttctaaaaaaaatctttttcttctctctcctctcctctatctttcacatgtgtttgtatctatagcatgctcttctacatggtctaataatcatttgaatcgtgcagatgacaataaaaaacaatcctcagttatgcccgaaatttatcaatcttgtcgacctgactctcggacaatggtgtctagattcagacttctacgtgttgattattttccttcaaagctcaccaaaactggaaaagcttactctgaaactcgaaaaggtaaatgattttcttcaaatgtatgctgatcctatttattttaaaccatttcctcacgagtacgtcttttcgggatacaacttacaagttcttttttatctgatgcagtattatccgcatccatatgaacatatcattggtgatgagcttacagaaagatcgtttacatgtgagcatcttaagattgttgagatcatatgcatggaggatgatgaaCccctggccaagatcgtggaaggcttgtttgttgacaatggcatgaactctgttcggtttgatatcaaatattggagtcagatcccgtttcagttacctgcattttaccgagaattgtacaactga
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| CDS seq | atgaatggcggtttcccgcgcggcaagcgcgggcggaacgccaccgcaaccgctggcccagactttctcagcgccctccccgagggtatcctccaccacatcatgtccttcctgaacgtgcgccaggtcattcagacgtgcgtgctgtcgtggcggtggcgcgacctctggcgctccgtgccccgcatcaacgccaactactgcgagctcagcatgtccccgatcgccgccttcacaccagacaacgaggcggcgttcaagaggttcgtcaaccggctgctcgagcgccgcgaccccgccgccgtcatccacaccttcaacctcagatacaccatttccaacccaaacaaccgcgataacgactcggcggacgccaacaggtggatcagccacgcgttgcagaatcaagctagtttcctcaagatcatcgtggatgcgcacgaattgcacctcgatcacacggtgttcacatcatgctacttgggtagaatcactctcaagaatgtgttcttggaccaaggcttcttcgagcagctggagattggctgcccactgctgcaggatctcctcttgtacgactgcatcattggagatgatgagatctcatctgagaccctgaatgttctcaccatgtatggatgtcagttcccaactctgcaggagagctgcatttctgcgccgaatctgacatctctgatcatgcatcagcctgagaacttcgtgcccgtactggacgacgtcgcgtcgctggtgacggcaacagttgacctgtttcctctcatcgaattttgtgcttatgacatgcgccagttgctctggagcctttctggtgttagaaatttggacctcgattactatgcgtattcagacttctacgtgttgattattttccttcaaagctcaccaaaactggaaaagcttactctgaaactcgaaaagtattatccgcatccatatgaacatatcattggtgatgagcttacagaaagatcgtttacatgtgagcatcttaagattgttgagatcatatgcatggaggatgatgaaCccctggccaagatcgtggaaggcttgtttgttgacaatggcatgaactctgttcggtttgatatcaaatattggagtcagatcccgtttcagttacctgcattttaccgagaattgtacaactga
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| Protein seq | MNGGFPRGKRGRNATATAGPDFLSALPEGILHHIMSFLNVRQVIQTCVLSWRWRDLWRSVPRINANYCELSMSPIAAFTPDNEAAFKRFVNRLLERRDPAAVIHTFNLRYTISNPNNRDNDSADANRWISHALQNQASFLKIIVDAHELHLDHTVFTSCYLGRITLKNVFLDQGFFEQLEIGCPLLQDLLLYDCIIGDDEISSETLNVLTMYGCQFPTLQESCISAPNLTSLIMHQPENFVPVLDDVASLVTATVDLFPLIEFCAYDMRQLLWSLSGVRNLDLDYYAYSDFYVLIIFLQSSPKLEKLTLKLEKYYPHPYEHIIGDELTERSFTCEHLKIVEIICMEDDEPLAKIVEGLFVDNGMNSVRFDIKYWSQIPFQLPAFYRELYN |
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| Function | F-box/FBD/LRR-repeat protein At1g78750 [UniProtKB/Swiss-Prot:Q9ZV93] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0007010 | OsLima_02g0007010.01 | Chr02 | 5075783 | 5078973 | + | NAM | ||
| CDS seq | atgaatggcggtttcccgcgcggcaagcgcgggcggaacgccaccgcaaccgctggcccagactttctcagcgccctccccgagggtatcctccaccacatcatgtccttcctgaacgtgcgccaggtcattcagacgtgcgtgctgtcgtggcggtggcgcgacctctggcgctccgtgccccgcatcaacgccaactactgcgagctcagcatgtccccgatcgccgccttcacaccagacaacgaggcggcgttcaagaggttcgtcaaccggctgctcgagcgccgcgaccccgccgccgtcatccacaccttcaacctcagatacaccatttccaacccaaacaaccgcgataacgactcggcggacgccaacaggtggatcagccacgcgttgcagaatcaagctagtttcctcaagatcatcgtggatgcgcacgaattgcacctcgatcacacggtgttcacatcatgctacttgggtagaatcactctcaagaatgtgttcttggaccaaggcttcttcgagcagctggagattggctgcccactgctgcaggatctcctcttgtacgactgcatcattggagatgatgagatctcatctgagaccctgaatgttctcaccatgtatggatgtcagttcccaactctgcaggagagctgcatttctgcgccgaatctgacatctctgatcatgcatcagcctgagaacttcgtgcccgtactggacgacgtcgcgtcgctggtgacggcaacagttgacctgtttcctctcatcgaattttgtgcttatgacatgcgccagttgctctggagcctttctggtgttagaaatttggacctcgattactatgcgtattcagacttctacgtgttgattattttccttcaaagctcaccaaaactggaaaagcttactctgaaactcgaaaagtattatccgcatccatatgaacatatcattggtgatgagcttacagaaagatcgtttacatgtgagcatcttaagattgttgagatcatatgcatggaggatgatgaaCccctggccaagatcgtggaaggcttgtttgttgacaatggcatgaactctgttcggtttgatatcaaatattggagtcagatcccgtttcagttacctgcattttaccgagaattgtacaactga
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| Protein seq | MNGGFPRGKRGRNATATAGPDFLSALPEGILHHIMSFLNVRQVIQTCVLSWRWRDLWRSVPRINANYCELSMSPIAAFTPDNEAAFKRFVNRLLERRDPAAVIHTFNLRYTISNPNNRDNDSADANRWISHALQNQASFLKIIVDAHELHLDHTVFTSCYLGRITLKNVFLDQGFFEQLEIGCPLLQDLLLYDCIIGDDEISSETLNVLTMYGCQFPTLQESCISAPNLTSLIMHQPENFVPVLDDVASLVTATVDLFPLIEFCAYDMRQLLWSLSGVRNLDLDYYAYSDFYVLIIFLQSSPKLEKLTLKLEKYYPHPYEHIIGDELTERSFTCEHLKIVEIICMEDDEPLAKIVEGLFVDNGMNSVRFDIKYWSQIPFQLPAFYRELYN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0793500 | SBH | 0.233966 | 0.119969 | 1.337768 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09580 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0793500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006700 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006850 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006620 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006570 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006610 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0083400 | RBH | 0.080828 | 0.0273855 | 0.100707 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006580 | RBH | 0.0 | 0.0 | 0.042378 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0086100 | RBH | 0.1305495 | 0.0087945 | 0.059524 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006730 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006700 | RBH | 0.0 | 0.0 | 0.0 |
