Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0006810 | OGI:02014330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:4937967-4938928 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatcacgtcctcgcctgcgtcggcatcctcgtcgccttcacgccgctgttcctccttgccgtgctcccgctcaagctgacgaacggcggcgacggggtgtagctgccgcctggcccgtggcggctgccggtgatcgggagcatgcaccacctgatgggcgagagcctcgtccaccgcgccatggccgacctcgcgcgccggctcgacgcgccgctcatgtacctcaagctcggggaggtccccgtcgtgttggcctcgtcgccgtgcgccgcccgcgagatcatgcgggcgcacgacgtcgcgttcgcgagccggccgctgagccccaccgtgcggcggatgcgcccccccggcgacggcagctccgcaagatctgcgtcgtcgagctgctcagcgcgcgccgcgtccggacgttccgccgcgtcagggaggaggaggtggcccgcctcgtgggcgcgctcgtgtatttggcccatgtggtgtttggcccatgtggcctagaattggttgtgtagtggtggtttagtaccaccttgaaagtttaggtgggtgctgcgccatgatcggggccaggttcgagaggcgcgacgagttcttggagggggctcgctgagcaggtgaagtggttggcccaaccgggagaaagccttgctacaccccaaaagctcccaaaactcttaagttggttcaactcccccctagattagcaataaaaaggggctcccccactttaagttggttcaactcccccctagattagcaataaaaaggggctcccccacttttaagttggttcaactagcaataaaaaggggctagcaatgtagaactgaactattctcaacatgaagcgctcctcggcgggcttttaagttggttcaactcccccccaatatagaactattcccaacatgaagctcctcggcgggttcagcccccgtcgtcgccgatggcgctaa
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| CDS seq | atggatcacgtcctcgcctgcgtcggcatcctcgtcgccttcacgccgctgttcctccttgccgtgctcccgctcaagctgacgaacggcggcgacgggctgccgcctggcccgtggcggctgccggtgatcgggagcatgcaccacctgatgggcgagagcctcgtccaccgcgccatggccgacctcgcgcgccggctcgacgcgccgctcatgtacctcaagctcggggaggtccccgtcgtgttggcctcgtcgccgtgcgccgcccgcgagatcatgcgggcgcacgacgtcgcgttcgcgagccggccgctgagccccaccgtgcggcggatgcgcccccccggcgacggcagctccgcaagatctgcgtcgtcgagctgctcagcgcgcgccgcaactattcccaacatgaagctcctcggcgggttcagcccccgtcgtcgccgatggcgctaa
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| Protein seq | MDHVLACVGILVAFTPLFLLAVLPLKLTNGGDGLPPGPWRLPVIGSMHHLMGESLVHRAMADLARRLDAPLMYLKLGEVPVVLASSPCAAREIMRAHDVAFASRPLSPTVRRMRPPGDGSSARSASSSCSARAATIPNMKLLGGFSPRRRRWR |
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| Function | Cytochrome P450 71D9 [UniProtKB/Swiss-Prot:O81971] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0006810 | OsLima_02g0006810.01 | Chr02 | 4937967 | 4938928 | + | NAM | ||
| CDS seq | atggatcacgtcctcgcctgcgtcggcatcctcgtcgccttcacgccgctgttcctccttgccgtgctcccgctcaagctgacgaacggcggcgacgggctgccgcctggcccgtggcggctgccggtgatcgggagcatgcaccacctgatgggcgagagcctcgtccaccgcgccatggccgacctcgcgcgccggctcgacgcgccgctcatgtacctcaagctcggggaggtccccgtcgtgttggcctcgtcgccgtgcgccgcccgcgagatcatgcgggcgcacgacgtcgcgttcgcgagccggccgctgagccccaccgtgcggcggatgcgcccccccggcgacggcagctccgcaagatctgcgtcgtcgagctgctcagcgcgcgccgcaactattcccaacatgaagctcctcggcgggttcagcccccgtcgtcgccgatggcgctaa
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| Protein seq | MDHVLACVGILVAFTPLFLLAVLPLKLTNGGDGLPPGPWRLPVIGSMHHLMGESLVHRAMADLARRLDAPLMYLKLGEVPVVLASSPCAAREIMRAHDVAFASRPLSPTVRRMRPPGDGSSARSASSSCSARAATIPNMKLLGGFSPRRRRWR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0184700 | SBH | 0.0 | 0.0 | 1.998509 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09330 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0184700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006500 | SBH | 0.048737 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006650 | SBH | 0.000000 | 0.247685 | 1.030326 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006470 | SBH | 0.565319 | 0.858380 | 2.226279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006390 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006440 | SBH | 0.436839 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0081400 | SBH | 1.12522 | 11.593083 | 0.532187 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006380 | SBH | 0.414991 | 0.050392 | 0.249546 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0084000 | SBH | 2.403291 | 3.7092115 | 0.139474 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023840 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006680 | SBH | 3.315184 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006720 | SBH | 0.040369 | 0.121185 | 0.236197 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006470 | SBH | 0.025650 | 0.451879 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006550 | RBH | 0.177034 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006520 | SBH | 3.720679 | 1.206675 | 0.883913 |
