Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0006600 | OGI:02014040 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:4702001-4705417 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagtgtaagacacaatgtggcacattgagcatggccaaagatttcttcaatgctattgagttacagtatgaaaatctttaatatttacagcagtaatcagatccaatggggggggggggggaaggggggaacactgtttacttgcttctttatacagcctacgcaaaccccgaaaatctatgaaatgaatcaacaagttgaaggtcactaggagagcacactcaacctcaggcaagcaccaatgaaggcaattcaagcaagaaacaataacctgcactcaacaccataagttatccgaaccacttgggtgatatgaactcactgaatcaccgcattccgatcacgcatttccttttctttctcaacagggagactgctttcgagttgcgcaaggtgattccggggaaatcctcagtgtccctccaagctccatggggactaggggaatcagagagtggagtacatctgtgattagtggcctgtaacttggttctggctgcacacagagcacagccaccgcagcaacctgcgaagtagtgaatcacaccaattgaattagttgaaaagatttgtgaggataaagatagaaattaagagggagtttacttggtacaagtgcttcagatccattgtgttcttgatcatggggtcaattatgttagggagctttgatcggtcagttagctgaggcatggcctgcatttgatttccatatgtcagatgccaacggattaggaaaatttaacttaaccacctggattcaggagatgaagcttaaaaatattctatgcatatcgagagaatgactgttttttaattgaactaaattcaacatgtcaagtatcagaatgttgggtacccatgtaacaattgactggcactgagattgtgctgtcttctcaacaggccgccttcccaacagaagttcaagaagtactactccaaacgcatatacatcactcttctcagtcaacttccctgaatttcatgcggttgcagataattaaattagatgttaatgtgagaaaaaagttagtctacatagacgattacaggtgggacatgagaaaagagagggcataccatctaacaagtactcgggagctacatagcccaatgtaccagaaagcttcaaacttcctttgctgtgattcccactggtcactgcaaggccgaaatctgaaatctgcaaaccaaagatgatcagtgatatgtgttacgattgacagtaatattctaattgacaagaactaagataagcaggcataccttagcattgaaatctgaatctaaaagtatgttagatgacttcagatccctatggataactggtggattgcaatgttcatgaagatattctaatcccctggttaatttagttgacagacgcatatgataggaatcaatgataacggtataaaaatatatttaatcatgcaaagtgaataaaaatggatggtaaccttgctgtatcaagagcaatcttcatccgaatgtgccagcttagagccgacccatgtgatggtcctagaaacaaacaaatagattaaaaatggatacttctccttgatcatactcacaattctgaggaaacaaatgaagaacaaagcaaattagaaggtaccatgaagttgtgcttccagtgatccattctccatcagctcataaacaatgaaacggttctcttcatgaatacagaagcccaaaagggacactatattcagatgccgaatactgccaagtaaatctagctcattctgccaattcagaggtaaccaaaaacaatcttagcaacaagacaagtctcatcaagaacaaatttcaggccatggacataaacaatcaccaacctcaaattccttctcacagtcctgtcccctgtggccaaatctcttgacggcagcaacaagtcctccttcaaaattggccttgtacacacacccaaacccaccagctccaagcaaattgctctcactgaacttcccggtcgccgtctcaagtgtattatactccatcatcgcgacaagtcctttcttgttagtcttcattgagttgaacttgttcagcatcggcaccaacgcaacccttgcggtatctgaacaatgcaaagtagtaagttcagtagctatgagattttcatggacaaacaagacaagccaacaaggatacatgaaccagtctgggcagggcaaagaaaagggcccaattcaaaacctgagctgcttcggatgttcttggagtcatgggctcggcgagaatgccggcacaggatgcaggcatacaatacggtggcgacgatcgccatgccggcgacggatgcaaggccaatggcaatgataagctccttgtggaaatgatggtgttgcctctgctccattgctgccactgcacctgtgaagcatagaagcaaaccaaagggtggtggattagagcactcttaagtgtttgagtgaaccaattcgagaagatgaacagctactaggccagctgctcatttgcaaaagaaatgcctttgaattttttaggtaaaactttttatgtacaaaatttggagaacccccaagattgaaaaaaaaagaaagaaaaagcaacttctctttcctacaaccaaattttgaggcaaatatattggagcatcttttgtttctcttttttcctttcgaaagaatgcacttttttgtttctttcccaagattgggcaaagttcaccatactaaaaagaacgagcacatatattcaattccaattcgtacccaagttcacgagacggcacttaaagttatgcgctttgttcaaacttggaagaaaccaaaggatcccaagggcgcactttttaccccatatctccaaaagaaacaacacgggtttcccaccaaatcagcacgggaatttctcagaaatgggtgaaggaaacatcgataaaatttctccctaaatttttttaaaaaaattagccagagaacacaaaattcagcaatgcgacaggacaccaaaacacatagacaaaaaagaaaaaaaaaagaaaaaagaaaacgcaatctttgatccaactgtaacagccgccaacctacccaagggaggagaaggcgccaccgcggcggcggcggcggcggcggagggagtcacggcgaggctgccattcgaggagaagatgcctccacctccacctccacctccacctccacctccacctccacctccggtagccggagccggagcagggggaacaacccgcggtgtcgccggcgccggtgaaggccccggtccaggagaaggcgaggccgccgccgccggcgaccggtgagtcctcccattggccggcaacgagcagctcagcaccagcaccagcaccagcaagaagaagaagcgggaggaggaggaggaggaggagagaggcgtcaatggcggcggtggcat
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| CDS seq | atgccaccgccgccattgacgcctctctcctcctcctcctcctcctcccgcttcttcttcttgctggtgctggtgctggtgctgagctgctcgttgccggccaatgggaggactcaccggtcgccggcggcggcggcctcgccttctcctggaccggggccttcaccggcgccggcgacaccgcgggttgttccccctgctccggctccggctaccggaggtggaggtggaggtggaggtggaggtggaggtggaggtggaggcatcttctcctcgaatggcagcctcgccgtgactccctccgccgccgccgccgccgccgcggtggcgccttctcctcccttgggtgcagtggcagcaatggagcagaggcaacaccatcatttccacaaggagcttatcattgccattggccttgcatccgtcgccggcatggcgatcgtcgccaccgtattgtatgcctgcatcctgtgccggcattctcgccgagcccatgactccaagaacatccgaagcagctcagataccgcaagggttgcgttggtgccgatgctgaacaagttcaactcaatgaagactaacaagaaaggacttgtcgcgatgatggagtataatacacttgagacggcgaccgggaagttcagtgagagcaatttgcttggagctggtgggtttgggtgtgtgtacaaggccaattttgaaggaggacttgttgctgccgtcaagagatttggccacaggggacaggactgtgagaaggaatttgagaatgagctagatttacttggcagtattcggcatctgaatatagtgtcccttttgggcttctgtattcatgaagagaaccgtttcattgtttatgagctgatggagaatggatcactggaagcacaacttcatggaccatcacatgggtcggctctaagctggcacattcggatgaagattgctcttgatacagcaaggggattagaatatcttcatgaacattgcaatccaccagttatccatagggatctgaagtcatctaacatacttttagattcagatttcaatgctaagatttcagatttcggccttgcagtgaccagtgggaatcacagcaaaggaagtttgaagctttctggtacattgggctatgtagctcccgagtacttgttagatgggaagttgactgagaagagtgatgtatatgcgtttggagtagtacttcttgaacttctgttgggaaggcggcctgttgagaagacagcacaatctcagtgccagtcaattgttacatgggccatgcctcagctaactgaccgatcaaagctccctaacataattgaccccatgatcaagaacacaatggatctgaagcacttgtaccaagttgctgcggtggctgtgctctgtgtgcagccagaaccaagttacaggccactaatcacagatgtactccactctctgattcccctagtccccatggagcttggagggacactgaggatttccccggaatcaccttgcgcaactcgaaagcagtctccctgttga
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| Protein seq | MPPPPLTPLSSSSSSSRFFFLLVLVLVLSCSLPANGRTHRSPAAAASPSPGPGPSPAPATPRVVPPAPAPATGGGGGGGGGGGGGGGGIFSSNGSLAVTPSAAAAAAAVAPSPPLGAVAAMEQRQHHHFHKELIIAIGLASVAGMAIVATVLYACILCRHSRRAHDSKNIRSSSDTARVALVPMLNKFNSMKTNKKGLVAMMEYNTLETATGKFSESNLLGAGGFGCVYKANFEGGLVAAVKRFGHRGQDCEKEFENELDLLGSIRHLNIVSLLGFCIHEENRFIVYELMENGSLEAQLHGPSHGSALSWHIRMKIALDTARGLEYLHEHCNPPVIHRDLKSSNILLDSDFNAKISDFGLAVTSGNHSKGSLKLSGTLGYVAPEYLLDGKLTEKSDVYAFGVVLLELLLGRRPVEKTAQSQCQSIVTWAMPQLTDRSKLPNIIDPMIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPMELGGTLRISPESPCATRKQSPC |
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| Function | Probable receptor-like protein kinase At1g80640 [UniProtKB/Swiss-Prot:Q0V7T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0006600 | OsLima_02g0006600.01 | Chr02 | 4702001 | 4705417 | - | NAM | ||
| CDS seq | atgccaccgccgccattgacgcctctctcctcctcctcctcctcctcccgcttcttcttcttgctggtgctggtgctggtgctgagctgctcgttgccggccaatgggaggactcaccggtcgccggcggcggcggcctcgccttctcctggaccggggccttcaccggcgccggcgacaccgcgggttgttccccctgctccggctccggctaccggaggtggaggtggaggtggaggtggaggtggaggtggaggtggaggcatcttctcctcgaatggcagcctcgccgtgactccctccgccgccgccgccgccgccgcggtggcgccttctcctcccttgggtgcagtggcagcaatggagcagaggcaacaccatcatttccacaaggagcttatcattgccattggccttgcatccgtcgccggcatggcgatcgtcgccaccgtattgtatgcctgcatcctgtgccggcattctcgccgagcccatgactccaagaacatccgaagcagctcagataccgcaagggttgcgttggtgccgatgctgaacaagttcaactcaatgaagactaacaagaaaggacttgtcgcgatgatggagtataatacacttgagacggcgaccgggaagttcagtgagagcaatttgcttggagctggtgggtttgggtgtgtgtacaaggccaattttgaaggaggacttgttgctgccgtcaagagatttggccacaggggacaggactgtgagaaggaatttgagaatgagctagatttacttggcagtattcggcatctgaatatagtgtcccttttgggcttctgtattcatgaagagaaccgtttcattgtttatgagctgatggagaatggatcactggaagcacaacttcatggaccatcacatgggtcggctctaagctggcacattcggatgaagattgctcttgatacagcaaggggattagaatatcttcatgaacattgcaatccaccagttatccatagggatctgaagtcatctaacatacttttagattcagatttcaatgctaagatttcagatttcggccttgcagtgaccagtgggaatcacagcaaaggaagtttgaagctttctggtacattgggctatgtagctcccgagtacttgttagatgggaagttgactgagaagagtgatgtatatgcgtttggagtagtacttcttgaacttctgttgggaaggcggcctgttgagaagacagcacaatctcagtgccagtcaattgttacatgggccatgcctcagctaactgaccgatcaaagctccctaacataattgaccccatgatcaagaacacaatggatctgaagcacttgtaccaagttgctgcggtggctgtgctctgtgtgcagccagaaccaagttacaggccactaatcacagatgtactccactctctgattcccctagtccccatggagcttggagggacactgaggatttccccggaatcaccttgcgcaactcgaaagcagtctccctgttga
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| Protein seq | MPPPPLTPLSSSSSSSRFFFLLVLVLVLSCSLPANGRTHRSPAAAASPSPGPGPSPAPATPRVVPPAPAPATGGGGGGGGGGGGGGGGIFSSNGSLAVTPSAAAAAAAVAPSPPLGAVAAMEQRQHHHFHKELIIAIGLASVAGMAIVATVLYACILCRHSRRAHDSKNIRSSSDTARVALVPMLNKFNSMKTNKKGLVAMMEYNTLETATGKFSESNLLGAGGFGCVYKANFEGGLVAAVKRFGHRGQDCEKEFENELDLLGSIRHLNIVSLLGFCIHEENRFIVYELMENGSLEAQLHGPSHGSALSWHIRMKIALDTARGLEYLHEHCNPPVIHRDLKSSNILLDSDFNAKISDFGLAVTSGNHSKGSLKLSGTLGYVAPEYLLDGKLTEKSDVYAFGVVLLELLLGRRPVEKTAQSQCQSIVTWAMPQLTDRSKLPNIIDPMIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPMELGGTLRISPESPCATRKQSPC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.080877 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0681700 | SBH | 0.407597 | 0.976845 | 0.744679 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g08530 | RBH | 0.117316 | 0.000000 | 0.494666 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0182600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006330 | RBH | 0.0 | 10.449822 | 4.342280 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006460 | RBH | 0.067613 | 0.566002 | 0.584927 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006260 | RBH | 0.0 | 8.331366 | 2.972069 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006180 | RBH | 0.0 | 0.157117 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006230 | RBH | 0.0 | 5.533804 | 6.917422 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0078300 | RBH | 6.2936525 | 2.3487195 | 7.8883245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006210 | RBH | 0.0 | 0.335872 | 0.177639 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0080900 | RBH | 8.9918145 | 2.2312025 | 24.4127835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026130 | SBH | 0.052282 | 0.147040 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006170 | RBH | 0.0 | 1.582524 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006470 | RBH | 0.0 | 5.533162 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0007210 | RBH | 0.0 | 0.0 | 0.294311 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006210 | RBH | 0.000000 | 3.670594 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006350 | RBH | 0.0 | 0.942190 | 1.998582 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006300 | RBH | 0.0 | 6.387777 | 4.680420 |
