Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0006050 | OGI:02012650 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:4198159-4201295 | ||||||||
| Gene Symbol | RISBZ4, OsbZIP15 | ||||||||||
| DNA seq | gcaaaagggagctgctttccttcctcgcagcgatcaacacaaaaagcttctctttcccttctcctcctcggtgatctgtctcgccggggcatctcgaaaagcatccgactccgacgccgccgcgcgccaccacccggccgatcgccgacgccgcagccgctggaagcagcagggacgacggagaatcggagatggacatcgaggcgttcatccacggcggaagcgggggcggcgacgccgacgccgaccacccgctcggcatcttctccgccgccgacctctccggcttcggcttcgcggactcggtgagtgattgattactgattattatgctgcctgctgcgactacgtagtatagtagtagtagtagggtgtgttttcacgccaaaattgaaagtttggttgaaattaaaacgatgtgacggaaaaattagaagtttgtgtgtgtaggaaagttttgatacgatggaaaagttgaaagtttgaagataaaatttggatctaaactgggccgtagtattaaattcgtgtgctaaaattaagttgaacacttgctgtattggatagcttgcagtagcacgtacggtgcttgtatatgcgtttttttagaaacgtgcttgtatatgcttgactagagtttcatgtctgcgaaattttcgttaattgctgctgatcagctgactcctactacctttctcaagtagaagactgttggttcatcctctaccatttttttacttgtacagtaatttttcatagttggtacgcaagtactccctccgacctccaatccaatatactcatatacttacgtgcaacttaatgcgacatatcctaatactatgaatatggatagacagtaataaatttactcttactaggagttttttttccccgattatatggaagacacacatcacaacacaagcacaccaaacttgcacaattttagttcgcgaacgaatgatgtcttgtgttttaaaagaatttatttgaatagcccgataagaggaaatcatgaattctaaagcatggaagaggagaaaccattttaggttaacagcataacatgagagtttccgttgtcatgacagggtttgattaagttggtattaaggactggtgataagtaattcttttcatataaggaagatgattacaagccctggttgcttatcttaaatcgtacttgattcttgatttgcatgattgatcactcgattaattttacttatatttttgtccaagcagagcaccatcacagggggcattcccaatcacatatggccccagtcccagaacctgaacgcacggcatcctgcggtctccacgacaattgagtcgcagtcatcaatctgtggtacggcctcacactcgtcatcttccacgattttcatcaattattcataagactgcaacaatttgcacacaaaaatacttgttgttcgatgtactcaatgatttgctactgtattgcacactgaaaagcacatgcaacttggatttttcaactcatggagatttcagcgatggacatccatggacagtaccagtgctgttactgtgtcatgtactgcatcaaaattgtgtttattgatgaggcacaaacaatgttcagtttatttaattgttcttgctcactctctgttcaattttctgtaatcagcagcagcaagtcccacatcagctaccaatctgaacatgaaggagagccaaactctgggaggcacaagtggttcggattctgaaagtgaatcgctgttggatatagagggtggtccatgcgaacaaagcacgaacccgttggacgtgaagagagtgagaaggtattccaagaacataagcgactatgtcaagcattttgtctgtcactgcgtgaaaaattatgggcatattcgctagtagtagaagttgaacattgcttttcagaaggaatgtttgacaaagaacttgcatgaaacggttgggggcttcaaattacaggatggtgtccaatcgggagtctgctcggcgatcgaggaagagaaagcaagctcacttagctgatctcgagtcacaggtaaactgatatgatctgaagttttgtacctgccgaacatttgccattgttcaattcaaacagtaacagattgattcgactaacaaatcatgtgccaattggtagctgtaattctgagtcaaaatgcgaaatgctagtgccggttctttcagatttccatagctcaaatcatgctcttgtttgtcaggttgaccagctccggggcgaaaacgcatcgcttttcaagcagttgacggatgccaaccagcaattcacaacttctgtcacggacaacagaatcctcaaatcagacgttgaggccctccgggtcaaggtgatcattcatctccatcttcatctgcacattgcattgctcatcactgtagccatcgtcaaatccgtcctgcattttcggccggtttctgagctctgaattcgtccccgtttgtaagtgcaggtgaagatggcggaggacatggtggcgcggggggcgctgtcgtgcgggctcggccacctgggcgggctgtcgccggcgctgaacccccggcaggcgtgccgcgtccccgacgtgctcgccggcctggactacgccggcgacgaccccttcacggccgggctgtcccagccggagcagttgcagatgcccggcggcgaggtggttgacgcctggggctgggacaaccaccccaacggcggcatgtccaagtgaaactactggtcctacttctatgtcagctcagctacgtttgaaacgtgatgtgtccaagtgaacggacttgagtttttcagagtcctcgtgtcgaagtgtcatgcactcttccctattcctgtaatagaactgactagctaagagactgaaagtctgaaactacgaagtataaatgtggtggaatttggaactatttttttctgatctggttgagcttgccttctgaattcatgatccatcattggtgagagcctggagaattcaggtaagtgaccaaatggtcgaaaaaatttcatctggtagggatatggtaaatcagatttactctgaaagtgaatgcttcgtttctgaacaattcatggtgataaataattgagtgcgatttctatg
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| CDS seq | atggacatcgaggcgttcatccacggcggaagcgggggcggcgacgccgacgccgaccacccgctcggcatcttctccgccgccgacctctccggcttcggcttcgcggactcgagcaccatcacagggggcattcccaatcacatatggccccagtcccagaacctgaacgcacggcatcctgcggtctccacgacaattgagtcgcagtcatcaatctgtgcagcagcaagtcccacatcagctaccaatctgaacatgaaggagagccaaactctgggaggcacaagtggttcggattctgaaagtgaatcgctgttggatatagagggtggtccatgcgaacaaagcacgaacccgttggacgtgaagagagtgagaaggatggtgtccaatcgggagtctgctcggcgatcgaggaagagaaagcaagctcacttagctgatctcgagtcacaggttgaccagctccggggcgaaaacgcatcgcttttcaagcagttgacggatgccaaccagcaattcacaacttctgtcacggacaacagaatcctcaaatcagacgttgaggccctccgggtcaaggtgaagatggcggaggacatggtggcgcggggggcgctgtcgtgcgggctcggccacctgggcgggctgtcgccggcgctgaacccccggcaggcgtgccgcgtccccgacgtgctcgccggcctggactacgccggcgacgaccccttcacggccgggctgtcccagccggagcagttgcagatgcccggcggcgaggtggttgacgcctggggctgggacaaccaccccaacggcggcatgtccaagtga
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| Protein seq | MDIEAFIHGGSGGGDADADHPLGIFSAADLSGFGFADSSTITGGIPNHIWPQSQNLNARHPAVSTTIESQSSICAAASPTSATNLNMKESQTLGGTSGSDSESESLLDIEGGPCEQSTNPLDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDVEALRVKVKMAEDMVARGALSCGLGHLGGLSPALNPRQACRVPDVLAGLDYAGDDPFTAGLSQPEQLQMPGGEVVDAWGWDNHPNGGMSK |
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| Function | bZIP transcription factor RISBZ4 [UniProtKB/Swiss-Prot:Q6H500] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0006050 | OsLima_02g0006050.01 | Chr02 | 4198159 | 4201295 | + | NAM | ||
| CDS seq | atggacatcgaggcgttcatccacggcggaagcgggggcggcgacgccgacgccgaccacccgctcggcatcttctccgccgccgacctctccggcttcggcttcgcggactcgagcaccatcacagggggcattcccaatcacatatggccccagtcccagaacctgaacgcacggcatcctgcggtctccacgacaattgagtcgcagtcatcaatctgtgcagcagcaagtcccacatcagctaccaatctgaacatgaaggagagccaaactctgggaggcacaagtggttcggattctgaaagtgaatcgctgttggatatagagggtggtccatgcgaacaaagcacgaacccgttggacgtgaagagagtgagaaggatggtgtccaatcgggagtctgctcggcgatcgaggaagagaaagcaagctcacttagctgatctcgagtcacaggttgaccagctccggggcgaaaacgcatcgcttttcaagcagttgacggatgccaaccagcaattcacaacttctgtcacggacaacagaatcctcaaatcagacgttgaggccctccgggtcaaggtgaagatggcggaggacatggtggcgcggggggcgctgtcgtgcgggctcggccacctgggcgggctgtcgccggcgctgaacccccggcaggcgtgccgcgtccccgacgtgctcgccggcctggactacgccggcgacgaccccttcacggccgggctgtcccagccggagcagttgcagatgcccggcggcgaggtggttgacgcctggggctgggacaaccaccccaacggcggcatgtccaagtga
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| Protein seq | MDIEAFIHGGSGGGDADADHPLGIFSAADLSGFGFADSSTITGGIPNHIWPQSQNLNARHPAVSTTIESQSSICAAASPTSATNLNMKESQTLGGTSGSDSESESLLDIEGGPCEQSTNPLDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDVEALRVKVKMAEDMVARGALSCGLGHLGGLSPALNPRQACRVPDVLAGLDYAGDDPFTAGLSQPEQLQMPGGEVVDAWGWDNHPNGGMSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.116847 | 0.428452 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0175100 | RBH | 0.743637 | 0.000000 | 11.057688 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07840 | RBH | 0.426691 | 0.000000 | 2.441718 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0175100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005780 | RBH | 0.133597 | 14.385129 | 7.101244 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005890 | RBH | 0.000000 | 4.384637 | 2.477608 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005700 | RBH | 0.579249 | 32.114147 | 7.159656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005630 | RBH | 0.050292 | 0.328242 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005660 | RBH | 1.756795 | 15.447837 | 12.768039 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0070300 | RBH | 3.88963 | 22.9544365 | 40.8850765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005630 | RBH | 0.067782 | 0.881612 | 1.467908 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0072500 | RBH | 6.108966 | 42.2708645 | 12.755322 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025210 | RBH | 0.0 | 0.672312 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005620 | RBH | 0.158585 | 22.366646 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005920 | RBH | 0.0 | 34.296379 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005860 | RBH | 0.129559 | 1.710865 | 1.782603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005630 | RBH | 0.082987 | 9.552514 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005790 | RBH | 0.0 | 5.614015 | 3.338493 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005760 | RBH | 0.139647 | 22.443289 | 11.546505 |
