Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0005670 | OGI:02011730 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3949916-3952158 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagaaaggagccaccaaacccagaacccgcagagaaaagaagagagagagagagagatcagaggagagagagagagacagacagagtgcggcgccgaggaggagaggagcaataatccaattccaatccattcctccgcgacctcgtcgtccgatcatggccatggccgcctccaggttgctgtgggcttcccgcgccgcctcctacctcaagatctccactttccccagggccttctccaccggtatctctctctctctcttcttcttctctttcggtttcttgttttgcgtatgtatttttcgtattctgtggtctgtatattcgtgggatcacgcgtggttggtggtggaatggcgtgatctcgttgcctgttcctcgcaaagattggattttgggggcaaggatcactgttcatcttatcttcttttattttgggttcagttggtggtttaggctgtgaatccgtctgcgtgaatgggaaatttggttggtctgatttgatctcttttcggcgaaatgtttcatcttttttttttgaaaaaggaatcttgtgtgattgttcctgctcttggtaacagcgtgtgcatggcaggtttatgtttctgcatttggatatgtgaatgttagcacactgatttctgaaattcagattagcctattgtatgtgttgatgaggaaggcaaagttttttttttagcctaatttctttctttgtcctgtttattcgaagtgttaggacgtttgacaccaacatatgaagcatctcaggaagatgcttttagtagctattaggagaaagctacctaccgaccaataattggcaatattgttatccaatatgaaaatgttacaataccacggttgtttgtttatgaatttaaaacttgtgttgctaaaatggtgtgccacaatcacatatttacagatctgaattaggcacaccaaggaaatgaattaagggaaagtcttattatagcagactttggttttaaaactttggtagtaggaaatgaaaaccatatggtaaaatatttatgcaacttaagaagtgacaaatagtcaattgttaatttgcctggccaagaggctttggtttctaacaagcattggacaaatggtcataggaaaatacacctaattttcagtttataaattggcttctagggggggccattaattccagttgttctggaaatttcgtatgctttctgtggaaaccttgtttcctcactgccaattcagtattttacacatctgatgaagttgtgcatattgcttgttttctatttttttcagtgctgaaggatctgaagtatgctgacactcatgaatgggttaaggttgagggtgattcggcaaccgttggaattacagaccatgcccaggttgatctattcatacgttatatcacattcattgcttcattctgtacatacgcataatataagcattccatttcttaaacattacagggttccaatatatgttatcatgttcagtacatgtagcaaggactagcagtgctaaagttgatcatgtgttgtttttttttcttttttttgcttccagcaccatttgggtgatgttgtgtatgtggagcttccagaagttggcagcagtgtatcccagggaaagaactttggtgctgttgaaagtgtgaaggcaaccagcgatatctactctccagtatctggagaggtggttgcagtgaacgatggactaggcgatgaacctggattggtaacttttaattgcgtaatagatcattgtgagtagattgaacacttctatgaactgtgttttttttttttgcataggttaatacaagtccatacgagagtgggtggatcatcaaggtcaaggttagtgattcaggtgagctcaattcactgatggatgacgcgaaatactcgaaattctgcgaggaagaagatagcaagcattgaacaaataccagtgacttgtgatctgcaaagaatgcgccttgacccttttgtcaatgcttgtgatgtgctatcgagcacttatctttaccaccggctgctcctgaaatcagcaccgatcaacacatgaataaattagtgttggcattgcctcttccacaaagagttgcaaacttcgaacctgtaaatgacatgagtttcgttatttctttgtagtatcgcgtgatttcatcttcaattgtagctctgccgcctctgctccgtttatttctgaaacgtgtgcttcgtttacttctg
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| CDS seq | atggccatggccgcctccaggttgctgtgggcttcccgcgccgcctcctacctcaagatctccactttccccagggccttctccaccgtgctgaaggatctgaagtatgctgacactcatgaatgggttaaggttgagggtgattcggcaaccgttggaattacagaccatgcccagcaccatttgggtgatgttgtgtatgtggagcttccagaagttggcagcagtgtatcccagggaaagaactttggtgctgttgaaagtgtgaaggcaaccagcgatatctactctccagtatctggagaggtggttgcagtgaacgatggactaggcgatgaacctggattggttaatacaagtccatacgagagtgggtggatcatcaaggtcaaggttagtgattcaggtgagctcaattcactgatggatgacgcgaaatactcgaaattctgcgaggaagaagatagcaagcattga
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| Protein seq | MAMAASRLLWASRAASYLKISTFPRAFSTVLKDLKYADTHEWVKVEGDSATVGITDHAQHHLGDVVYVELPEVGSSVSQGKNFGAVESVKATSDIYSPVSGEVVAVNDGLGDEPGLVNTSPYESGWIIKVKVSDSGELNSLMDDAKYSKFCEEEDSKH |
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| Function | Glycine cleavage system H protein 2, mitochondrial [UniProtKB/Swiss-Prot:O82179] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005670 | OsLima_02g0005670.01 | Chr02 | 3949916 | 3952158 | + | NAM | ||
| CDS seq | atggccatggccgcctccaggttgctgtgggcttcccgcgccgcctcctacctcaagatctccactttccccagggccttctccaccgtgctgaaggatctgaagtatgctgacactcatgaatgggttaaggttgagggtgattcggcaaccgttggaattacagaccatgcccagcaccatttgggtgatgttgtgtatgtggagcttccagaagttggcagcagtgtatcccagggaaagaactttggtgctgttgaaagtgtgaaggcaaccagcgatatctactctccagtatctggagaggtggttgcagtgaacgatggactaggcgatgaacctggattggttaatacaagtccatacgagagtgggtggatcatcaaggtcaaggttagtgattcaggtgagctcaattcactgatggatgacgcgaaatactcgaaattctgcgaggaagaagatagcaagcattga
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| Protein seq | MAMAASRLLWASRAASYLKISTFPRAFSTVLKDLKYADTHEWVKVEGDSATVGITDHAQHHLGDVVYVELPEVGSSVSQGKNFGAVESVKATSDIYSPVSGEVVAVNDGLGDEPGLVNTSPYESGWIIKVKVSDSGELNSLMDDAKYSKFCEEEDSKH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.278758 | 1.503487 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0170100 | RBH | 0.260286 | 0.997680 | 13.071423 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07410 | RBH | 0.138509 | 0.489125 | 3.379493 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0170100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005420 | RBH | 0.115801 | 278.406494 | 33.708138 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005510 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005360 | RBH | 0.410524 | 464.214478 | 35.072277 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005270 | RBH | 0.110621 | 8.976623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005320 | RBH | 4.431061 | 192.234726 | 86.931267 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0065400 | RBH | 37.816738 | 60.345314 | 31.512989 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005270 | RBH | 0.268021 | 23.561049 | 3.770320 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0068000 | RBH | 12.102603 | 8.6804555 | 33.1196985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025670 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005270 | RBH | 0.178474 | 86.642670 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005570 | RBH | 2.535773 | 145.681534 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005520 | RBH | 1.094249 | 15.657269 | 6.128262 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005300 | RBH | 0.926673 | 90.034615 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005440 | RBH | 0.954035 | 61.469444 | 15.370769 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005410 | RBH | 1.427961 | 103.946594 | 26.599810 |
