Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0005620 | OGI:02011730 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3892616-3896480 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatctcttcatggagctgaaggagcgccatgattacgtccctccagaagatttcatcacccgagtgttgccgcccgaggctttcgccgacagccgtgacatcccggagtatgaggtcgcgttcatcagagtgcccctgtacgagctccgtgaccccgtcgacaagggcctcatgaggaagcgcattgaggagcagcggcggcgggaggcggagaggcggcggcagcttgagaaggatatgcggcggtgggaggaggaggaggaggaggaggcatggccgtgggaggacgacgacgacgacttcctgaggatgtcacaacagctgtcagtaatctgttcagaaagccgtgggaagagaggggattggcctaatatgaaggcaacaagaagagggagaagaagaacacatgcattaaccccagacaatgaggaggaggaggagaatttgagtgagctggagctagccgtggagaacacacggcgcaggatacatcactgcaactgcaaccacatcccgcgtcacaccctcttcacgagccacgccgatgtggaggagctcttcctccctttcaagctggaagagccttacctctgctttgcctcgcgatgccagaagtctgcgccctcctacgctcacttcttccccgacttcaaccgttcaccggtaattcaataacttccctcccaacaatttttactcttgctgcctgacattgtgcataaatatttgactagcatgttattgacacttgcaagcattgtttatatctctatttaaatcttctggcttgatttcgtgctcgcggcattgcaacatatctcaaataattaaatcataggttctgagtttagaaaagagaaaattccaatatatattgctgtatcatctacagctagtagttgcacatacacatatgcaaacaatataatatgtacttagctaaaataaaatacaacactcccatatatcaagaacctaggactggatgagacatttcctagtaatacgaatctagacagcttaggaaatgttccatccaatcctagattcttatattttgggaaggagggagtatcatttactcccactgccttgtccaactaattagcatatatattgctacatgtcaacaattaataggggtgaaaatgctactgaattaccctttttatcagtataccattttcatctagaatttctgaaaaaaaacatattgtactgataacccatgaaaataattacaaaaaaacataattccgatagttctgttctgctatattctgatgttccggtaacactgacatcgtttttgtttctgtctctactcttttgatttcgtttttgaggaaaaaaatgtttttccaactgttttcatcctcttaacaataacatgtgttccctactattgtagcgtataacgtctgattggctgcgtccttctacgtttgaaggggacctacaatatatcctattctttcacaagctgatggataccgtggagtgtggtaacacagaagatacagttctagccaaagccatcaccattgcaacacaatcttatcagaagatgctgtacttccaaattgaagctgctgtgcaagattgcttggagcttcttaaggaaatggagaggatgaatgatagatacgacttctatcatttcattgcatctgagatcctcttcaacaacaagtcatatgaagatgtgctcaagcttatacgcgatgggcatgtagagttacactacacgcttaaagagttcagcactccccatgctgatcaccacatggatgatttggtttgtgctattttcaaatagacaatctaatgctcttgtgcctataatattcatatttgtttgacatttgtttgtaggttcatcgccttgtgggcaggactcgtgcttatgtatgtattattgtatctaaatatttcctttttttattttttttcttaggagtataaaatttcgtctcctttcattcatccagatgcccacagatgcacaacgagagtgtggaatgttcaaggactgggtgtgtcagcaggttgataaggaggtaacttcgttttatgccaaatctattgtctatttttgtcgcataatggtgtctaattcttttgtttcttctgtccacagtatggatctcttggttatctttacatgcattttcttgataacaagatgagagcttggtttgccccatttcctgaaggtaaaattctcaactaaatttcatccacaatgaaaaagtaaaatctattcccttttgaaagtatacgatattcctttttgagggaattctaggatattctgtgccattggattgggtgcaatagtctcagccaccacctctttttcactgcatgaaaagtaaaaaaattgcacctacaaaggttcttgctatgccatctttgttgatgcttgttttcacaagcataaattttccatcttgtgattggataacaactgcatgccactaggctcttcttgagtaatggcaaattcttgttcttgagaaattggctattatccaatatatgattggaaataatgatttatttttctgttttcatatatacaaaaggcaaaaaaattacatattggactctttgcagacctcaattccagttacatttggcgtgctacagtcacatctataaatcgaaagtaattgcgcacaataactgagccaagggaagagcttattatctagatatgcaaaagtaattggacaaatggtgatacgcagaagcacccataaatttgtttcagggtgccactaatttgaatggttctagatttttcatttgcatggttgagcttcattgctgcctgtcaaaacacagctgcagttacttatctttcgtgttttccctttttcagtgctgaaggatctgaagtactctgaaactcatgaatgggttagtgttgaaggcgattatgcaacaattgggatttcagatcatgcccaggtacatatttagatgttctatcactctgagcatttttttttttattttagggcctcagtgtgttgaatgatccatttgcttcactctatgcatgtacacagagcatgcgttctatttcttaaacgttattaggtccaacatatgttaccatattcagcgtatagaataagggcttgtggttcttaagtttattttattttattttattttattttgctctcaggaccatttgggttatgttgcgtctgtggagctcccagaagttggccaaagtgtatcccagggaaataaatttggtgttgttgtaagtgtgaagggaaccaccaggggtattaactcaccagtatctggagaggttgttgaagtgaatgatcaactaagcgatttacctggattggtaagctgtagaagttgagtatggtaaaaaacgctttaataacctgctaactgttttttttgtcgttacctgcataggtaaatgcaaggccatacgagacagggtggattatcgtggtcaagatcagtgattcaggcgagctcaattcgctcatgaatgacgaggattactcaaaattttgcaagggagaaaaagacaagtattgaacaaattgcagtgagtcttgatccttgtcaatgcttgtgatgtgccatatcacttaccaatctgttggtctgtatcatgttggcattcgctaacacgtaacgtgatgctcaaacagactcaggaacatgttggaatcccttccctgtttatgttgtttaggatgaaactgttgtcgcaagtgaacatgcaagtatagcacccctaattaagctataatgatgccaattctgccaaaaccggtgtgcataatcaatcaatgatagttacagttgctgtcgagtt
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| CDS seq | atggatctcttcatggagctgaaggagcgccatgattacgtccctccagaagatttcatcacccgagtgttgccgcccgaggctttcgccgacagccgtgacatcccggagtatgaggtcgcgttcatcagagtgcccctgtacgagctccgtgaccccgtcgacaagggcctcatgaggaagcgcattgaggagcagcggcggcgggaggcggagaggcggcggcagcttgagaaggatatgcggcggtgggaggaggaggaggaggaggaggcatggccgtgggaggacgacgacgacgacttcctgaggatgtcacaacagctgtcagtaatctgttcagaaagccgtgggaagagaggggattggcctaatatgaaggcaacaagaagagggagaagaagaacacatgcattaaccccagacaatgaggaggaggaggagaatttgagtgagctggagctagccgtggagaacacacggcgcaggatacatcactgcaactgcaaccacatcccgcgtcacaccctcttcacgagccacgccgatgtggaggagctcttcctccctttcaagctggaagagccttacctctgctttgcctcgcgatgccagaagtctgcgccctcctacgctcacttcttccccgacttcaaccgttcaccgcgtataacgtctgattggctgcgtccttctacgtttgaaggggacctacaatatatcctattctttcacaagctgatggataccgtggagtgtggtaacacagaagatacagttctagccaaagccatcaccattgcaacacaatcttatcagaagatgctgtacttccaaattgaagctgctgtgcaagattgcttggagcttcttaaggaaatggagaggatgaatgatagatacgacttctatcatttcattgcatctgagatcctcttcaacaacaagtcatatgaagatgtgctcaagcttatacgcgatgggcatgtagagttacactacacgcttaaagagttcagcactccccatgctgatcaccacatggatgatttggttcatcgccttgtgggcaggactcgtgcttatatgcccacagatgcacaacgagagtgtggaatgttcaaggactgggtgtgtcagcaggttgataaggagtatggatctcttggttatctttacatgcattttcttgataacaagatgagagcttggtttgccccatttcctgaagtgctgaaggatctgaagtactctgaaactcatgaatgggttagtgttgaaggcgattatgcaacaattgggatttcagatcatgcccaggaccatttgggttatgttgcgtctgtggagctcccagaagttggccaaagtgtatcccagggaaataaatttggtgttgttgtaagtgtgaagggaaccaccaggggtattaactcaccagtatctggagaggttgttgaagtgaatgatcaactaagcgatttacctggattggtaaatgcaaggccatacgagacagggtggattatcgtggtcaagatcagtgattcaggcgagctcaattcgctcatgaatgacgaggattactcaaaattttgcaagggagaaaaagacaagtattga
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| Protein seq | MDLFMELKERHDYVPPEDFITRVLPPEAFADSRDIPEYEVAFIRVPLYELRDPVDKGLMRKRIEEQRRREAERRRQLEKDMRRWEEEEEEEAWPWEDDDDDFLRMSQQLSVICSESRGKRGDWPNMKATRRGRRRTHALTPDNEEEEENLSELELAVENTRRRIHHCNCNHIPRHTLFTSHADVEELFLPFKLEEPYLCFASRCQKSAPSYAHFFPDFNRSPRITSDWLRPSTFEGDLQYILFFHKLMDTVECGNTEDTVLAKAITIATQSYQKMLYFQIEAAVQDCLELLKEMERMNDRYDFYHFIASEILFNNKSYEDVLKLIRDGHVELHYTLKEFSTPHADHHMDDLVHRLVGRTRAYMPTDAQRECGMFKDWVCQQVDKEYGSLGYLYMHFLDNKMRAWFAPFPEVLKDLKYSETHEWVSVEGDYATIGISDHAQDHLGYVASVELPEVGQSVSQGNKFGVVVSVKGTTRGINSPVSGEVVEVNDQLSDLPGLVNARPYETGWIIVVKISDSGELNSLMNDEDYSKFCKGEKDKY |
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| Function | Glycine cleavage system H protein 2, mitochondrial [UniProtKB/Swiss-Prot:O82179] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005620 | OsLima_02g0005620.01 | Chr02 | 3892616 | 3896480 | + | NAM | ||
| CDS seq | atggatctcttcatggagctgaaggagcgccatgattacgtccctccagaagatttcatcacccgagtgttgccgcccgaggctttcgccgacagccgtgacatcccggagtatgaggtcgcgttcatcagagtgcccctgtacgagctccgtgaccccgtcgacaagggcctcatgaggaagcgcattgaggagcagcggcggcgggaggcggagaggcggcggcagcttgagaaggatatgcggcggtgggaggaggaggaggaggaggaggcatggccgtgggaggacgacgacgacgacttcctgaggatgtcacaacagctgtcagtaatctgttcagaaagccgtgggaagagaggggattggcctaatatgaaggcaacaagaagagggagaagaagaacacatgcattaaccccagacaatgaggaggaggaggagaatttgagtgagctggagctagccgtggagaacacacggcgcaggatacatcactgcaactgcaaccacatcccgcgtcacaccctcttcacgagccacgccgatgtggaggagctcttcctccctttcaagctggaagagccttacctctgctttgcctcgcgatgccagaagtctgcgccctcctacgctcacttcttccccgacttcaaccgttcaccgcgtataacgtctgattggctgcgtccttctacgtttgaaggggacctacaatatatcctattctttcacaagctgatggataccgtggagtgtggtaacacagaagatacagttctagccaaagccatcaccattgcaacacaatcttatcagaagatgctgtacttccaaattgaagctgctgtgcaagattgcttggagcttcttaaggaaatggagaggatgaatgatagatacgacttctatcatttcattgcatctgagatcctcttcaacaacaagtcatatgaagatgtgctcaagcttatacgcgatgggcatgtagagttacactacacgcttaaagagttcagcactccccatgctgatcaccacatggatgatttggttcatcgccttgtgggcaggactcgtgcttatatgcccacagatgcacaacgagagtgtggaatgttcaaggactgggtgtgtcagcaggttgataaggagtatggatctcttggttatctttacatgcattttcttgataacaagatgagagcttggtttgccccatttcctgaagtgctgaaggatctgaagtactctgaaactcatgaatgggttagtgttgaaggcgattatgcaacaattgggatttcagatcatgcccaggaccatttgggttatgttgcgtctgtggagctcccagaagttggccaaagtgtatcccagggaaataaatttggtgttgttgtaagtgtgaagggaaccaccaggggtattaactcaccagtatctggagaggttgttgaagtgaatgatcaactaagcgatttacctggattggtaaatgcaaggccatacgagacagggtggattatcgtggtcaagatcagtgattcaggcgagctcaattcgctcatgaatgacgaggattactcaaaattttgcaagggagaaaaagacaagtattga
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| Protein seq | MDLFMELKERHDYVPPEDFITRVLPPEAFADSRDIPEYEVAFIRVPLYELRDPVDKGLMRKRIEEQRRREAERRRQLEKDMRRWEEEEEEEAWPWEDDDDDFLRMSQQLSVICSESRGKRGDWPNMKATRRGRRRTHALTPDNEEEEENLSELELAVENTRRRIHHCNCNHIPRHTLFTSHADVEELFLPFKLEEPYLCFASRCQKSAPSYAHFFPDFNRSPRITSDWLRPSTFEGDLQYILFFHKLMDTVECGNTEDTVLAKAITIATQSYQKMLYFQIEAAVQDCLELLKEMERMNDRYDFYHFIASEILFNNKSYEDVLKLIRDGHVELHYTLKEFSTPHADHHMDDLVHRLVGRTRAYMPTDAQRECGMFKDWVCQQVDKEYGSLGYLYMHFLDNKMRAWFAPFPEVLKDLKYSETHEWVSVEGDYATIGISDHAQDHLGYVASVELPEVGQSVSQGNKFGVVVSVKGTTRGINSPVSGEVVEVNDQLSDLPGLVNARPYETGWIIVVKISDSGELNSLMNDEDYSKFCKGEKDKY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0169700 | RBH | 0.0 | 0.0 | 0.301219 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07330 | RBH | 0.0 | 0.0 | 0.075631 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0169700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005370 | RBH | 0.0 | 0.0 | 1.662611 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005510 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005320 | RBH | 0.0 | 0.0 | 2.403518 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005280 | RBH | 0.0 | 0.0 | 5.328697 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0064600 | RBH | 5.087759 | 12.2375955 | 8.7875055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005230 | RBH | 0.0 | 0.000000 | 0.522370 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0067400 | RBH | 3.279005 | 9.3718395 | 13.868906 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025670 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005470 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005400 | RBH | 0.0 | 0.0 | 0.775138 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005370 | RBH | 0.0 | 0.0 | 0.435823 |
