Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0005480 | OGI:02011500 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3796753-3798681 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaagcatcaaaactaatccattaatctagtatacaaactactgccaaaagtcctaaaactaggtacaagtaatcccgtacaaccatggaatatatatactatatgttaattgcacacatatgtatgcaagaattaattgcagtaagagcaaaatattacaactagctagcttctaggagtacatgtatattttctaggtgagccagcagcaaggagaagaaatcgtaagttcaaggttaatggccgccggcggcagcggctgtgtggaacaagcaaaaggatgacgatgaccatgccgcgttgatccgtcgtcgttgatgatgttaggcgccggtggctggatcagaagctcgtcgtcgtcgtcggtgatgctcgagccaccgtctttcgattcttcagcggcgccgccgctgatcgacagcgtcagctcgcagccgtcgtcgtctccggcgtgcagcgcttgccgccggtgaggtctctggtggctatggctcccaattccagctgctggcacctgcaacaagaaaaatcaatcaatcaatcaatcaatcaagacactcaaatgagccaattaattaattaattgattagcgttcttgatctgtcctagtattaattagagctagaagaaaatggttaccgttcttgttgcaaggaagctgaagctgctcatctgtcgtctctgctgttcatcctgctgcgccgtcgtcgtccaatcgatttgtggggtgacaggatgacgacggttaacattgctactgttgttggagttcctgtacatctgctccatgcatgacgcaaattaatttggtttaattcgattgaaattaaaagagatgatgatatttttagtgtagtcctggctatatgtttttagctacctgaagatggcttttaacgtgcgatatactgactcccttagcgcccatcagctgcataattcgcttcggtgttgcctctgtaattcagatgagaacaaaaacaaaagttacttcgaatttaatttttagggattagtacatttttaaataccgactaataccacggttctgtttggtttctccgaatagatggtagtacatttcaaaattttcgattttgtgatgatatatactccttccgtcaaaaaaaaaactaatcctaggtttgttaggtttaaatccaagattagTtttttttttttgagacggagggagtatatatctccaagggacacaaacgaagtctcatattgacgtgtaattttttttctcattcgtgaataaaaaacaaacgaaatcttgagaacttatccttttccttttaaagaatgagcaatatttataaatgcaaaagttgtatattaaatgtaccatttagaaatttaaaaagcatgtaagaaactgcagtataagatagtaaaggaactggtcacaatgctaattaagatactagggattattcagattatagctaaaataaaccttaacaaattttgacaatgctaaaattttagtaaagtttgacaagaaactaaatatatgcatatatttaacaactctagttagaaaaaatggtttgaaatgctatcaatctgaacgagtgattggtttaggctttatagttgagggagatcaaattaacatctaaattaactgaccgtggcatccgccgaggcggcggacggcgtggacgaagcggcggtgcagctcctccggccaccgcatccgcggcgcctcgctccggttgtaccgccggacgacgaccggcggcgaccccccgcagccgccggcgctgcccattcgatctcttcttcctctcgctcccatattagcttccttcaatctagaactactagaagcttaattagcaatgcgacgatcgatacgatggatgaagctagtacacatgcacatcagtacacatgtatatatgctagtaattccatt
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| CDS seq | atgggagcgagaggaagaagagatcgaatgggcagcgccggcggctgcggggggtcgccgccggtcgtcgtccggcggtacaaccggagcgaggcgccgcggatgcggtggccggaggagctgcaccgccgcttcgtccacgccgtccgccgcctcggcggatgccacgaggcaacaccgaagcgaattatgcagctgatgggcgctaagggagtcagtatatcgcacgttaaaagccatcttcagatgtacaggaactccaacaacagtagcaatgttaaccgtcgtcatcctgtcaccccacaaatcgattggacgacgacggcgcagcaggatgaacagcagagacgacagatgagcagcttcagcttccttgcaacaagaacggtgccagcagctggaattgggagccatagccaccagagacctcaccggcggcaagcgctgcacgccggagacgacgacggctgcgagctgacgctgtcgatcagcggcggcgccgctgaagaatcgaaagacggtggctcgagcatcaccgacgacgacgacgagcttctgatccagccaccggcgcctaacatcatcaacgacgacggatcaacgcggcatggtcatcgtcatccttttgcttgttccacacagccgctgccgccggcggccattaaccttgaacttacgatttcttctccttgctgctggctcacctag
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| Protein seq | MGARGRRDRMGSAGGCGGSPPVVVRRYNRSEAPRMRWPEELHRRFVHAVRRLGGCHEATPKRIMQLMGAKGVSISHVKSHLQMYRNSNNSSNVNRRHPVTPQIDWTTTAQQDEQQRRQMSSFSFLATRTVPAAGIGSHSHQRPHRRQALHAGDDDGCELTLSISGGAAEESKDGGSSITDDDDELLIQPPAPNIINDDGSTRHGHRHPFACSTQPLPPAAINLELTISSPCCWLT |
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| Function | Putative Myb family transcription factor At1g14600 [UniProtKB/Swiss-Prot:Q700D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005480 | OsLima_02g0005480.01 | Chr02 | 3796753 | 3798681 | - | NAM | ||
| CDS seq | atgggagcgagaggaagaagagatcgaatgggcagcgccggcggctgcggggggtcgccgccggtcgtcgtccggcggtacaaccggagcgaggcgccgcggatgcggtggccggaggagctgcaccgccgcttcgtccacgccgtccgccgcctcggcggatgccacgaggcaacaccgaagcgaattatgcagctgatgggcgctaagggagtcagtatatcgcacgttaaaagccatcttcagatgtacaggaactccaacaacagtagcaatgttaaccgtcgtcatcctgtcaccccacaaatcgattggacgacgacggcgcagcaggatgaacagcagagacgacagatgagcagcttcagcttccttgcaacaagaacggtgccagcagctggaattgggagccatagccaccagagacctcaccggcggcaagcgctgcacgccggagacgacgacggctgcgagctgacgctgtcgatcagcggcggcgccgctgaagaatcgaaagacggtggctcgagcatcaccgacgacgacgacgagcttctgatccagccaccggcgcctaacatcatcaacgacgacggatcaacgcggcatggtcatcgtcatccttttgcttgttccacacagccgctgccgccggcggccattaaccttgaacttacgatttcttctccttgctgctggctcacctag
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| Protein seq | MGARGRRDRMGSAGGCGGSPPVVVRRYNRSEAPRMRWPEELHRRFVHAVRRLGGCHEATPKRIMQLMGAKGVSISHVKSHLQMYRNSNNSSNVNRRHPVTPQIDWTTTAQQDEQQRRQMSSFSFLATRTVPAAGIGSHSHQRPHRRQALHAGDDDGCELTLSISGGAAEESKDGGSSITDDDDELLIQPPAPNIINDDGSTRHGHRHPFACSTQPLPPAAINLELTISSPCCWLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.118893 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0168200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0168200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005220 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005350 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005170 | RBH | 0.0 | 2.181469 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005060 | RBH | 0.059647 | 0.035930 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005120 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0063100 | RBH | 0.2262325 | 0.133613 | 0.3163525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005080 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0065700 | RBH | 0.363039 | 9.859836 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025830 | RBH | 0.090970 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005310 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005220 | RBH | 0.0 | 0.0 | 0.457423 |
