Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0005270 | OGI:02010910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3618554-3623089 | ||||||||
| Gene Symbol | RLCK63, OsRLCK63 | ||||||||||
| DNA seq | atgccacaatgcgcgatcgcgtcccgagtccgacccgccgagccgccgccgccgcgtcgagcccgagccgcgccacgcgtccgtctctctgacaggtgggccccacgcggccaacgcggccaccacgtggtcaacggtttgaccggccagcctatcctcctgctcctcttcttcttgttcttcttcttcttcttgctcccgtttcccgattcccactgcggagaagtcaaatacggccacctggttcgctacaacccaagcccaccgccgctgcgaagctgccattcgccgacgaacagctcgccggagaggctgctttcccggagctttgagcttcttggactagctctgctcggattcttgcttggttgggattatcaggtgagtcgtcttcttggttgatttctctggattctgcggatacaaaggttggggattgtcttttcgttgagtatggaattagggattgcttgttcgttgatagtagtagtagtagactgcttcccggtgttgattggttaaagatttgggaatgattcgtgagatagatgagagccccgaattcgatggggggctaaattgagttcttttcttaggttgtctttcaattttacatgctcatgaatggatcttcgattttgtaccttgtcgtgtgtgatcgccaatctgtatggaaatcagtttacatattctgatttttttttttgggtgagtggagaatgtgctaggattaggatgtcaacaacaatggtgggatggaactttcgttttcgctttggagaccaggcctaatcatgcattactttattgtatgttgcgtgtgggatgcagtaggtctaatcatagattgtttctatcactagcagagttagttagactagaaaatcttttttttttccattttcttgaaattagttggtcctgttgacgagcaattgatcggatggtgcctgcccaatgatagcgtttctgtgggtagaaattatgaaatgtagataaattctagaaatatagagcaatccgtactgctgctggctggctctaatagtctaatactatgttagttcatctcacctgcttcctgcttgcattccccgagctttaaacatgttactcccactttaagttgtataactagatcatctttactgatgttggttgagctgtaaccaatcaatggcctattttggctgcttattgtaatttttttatcacgaaacccacataactgctgcatctagtaaaacagttgaagcaaggtcagtctgacatcgagccgtcgtggtaggcctaagattcttgtggtttagctgtaattctggaccttatggacaaatgaaaaggctgcattcattctgtgccaccatgacaatttgcagcactcctggaatgtaacatttctgtataatgttaatcatgaacttaatgtttgaaatggtaagtggctaagtgctcaatatacctttcttcttagctaaccattacctgcattctttcttttcaggacatgatggcagctgttgaaaattgatgacatgcttatgtggatattcacaagtgaaactgtatttgttgaactgcagaattaaggccatcatagtagttttagatttcggtaatgggttgtttttgtatatttggcaagagaagggcaacccgacagcaaagttctcagcataatgatggtagagatctctaaaacagactgcattataccctatttgttgaacatgatttgtccatattcatccttgatatgtttcttgctgaaatatttaacatgatttgtacagacccctctggtgatatgaatataacaaaattcacttacaaggagctttcaagggttactgaaaattttagcccgtctaataagattggtgagggaggttttggatctgtgtataaggtaatataagtagccttcaaagttcaaacaaataagtgaagaaaaattccaaaaaaaaatgaattctcacgtgttcatcatgatggattaatggtgcagggaaagctaaggaatggaaagcttgttgccgtcaaggtgctatctttagagtcaagacagggagcgaaggaatttctgaacgaactcatggcaatttcaaacgtatctcatgaaaatcttgtcaagctttatggctattgtgtggaaggaaaccaaagaatccttgtctacaattatcttgaaaataatagccttgcacaaacacttttgggtatggttacttgaatcgtttctattgctttatcctctcaaatttttacatacagtgctaagaaaagacctagatattcaaacagtttcctttgtttttcctcttttgttttttcaggttatggccacagcaacatccagttcaactgggcaactcgagtaaatatttgtgttggcatcgcccgtggactaacatacctccatgaagttgtaaatccccacattgttcaccgggatatcaaagcaagcaatatacttctagataaaggtcttacgccgaaaatatctgattttggtttagcaaagcttttgcctccagatgcatcacatgttagcacaagggttgctggaacattgtaagtaaactttgtcataagttctttttataatgagttaacaagtacgatgcatttttcaagtaccttatctttttcttgggtatctatggtagtgcctatagcattcctttcagtttaaatggttgacccatatgacagtacaccccgacaatttcttttacattttatgaaatgattgtcagtggaaaagctaaggcaattaaaattgcaaatatcaaatgattatttagtaatttatggattatatttatgacccatcaaatatcaatacacctgcagctttacttactcagttttacatgacagaggttacttggctccagagtatgccattcgaggacaagtgacacggaagtcagatgtttatagttttggtgttctgttactagaaatagttagtgggagatccaacaccaatacaagattaccctatgaagatcagatacttcttgaaagggtaagataaaatacaatacttttttttgttgttccttgtatatcagaagttactatctttttttaccatcatcactaaattatttatttaggctgaagttatatctaatatgagtgttgtatttgttccatgaactaatgttggtgccttcaagtggaagtcttggtttcccataagaggactaatggagatacatgcagttattgcttttagaatcttagccatgacatttcaagttttcagctattatatttgtaaaatcatattctggttttaatagttaacactcttgatcaccgcataatttactaggtgattatttgtgctttttatagaatgtgatcaaatttcacttgacagcctagtcctctcagtagctgtgcagggcacattagcaatgccttagttttatgggtactgctgaatgtgctggttaagataattatttacatgggcacaatggaaattacatattgggagtcgcaaacatgaaagcattcgtgaacaaaagtttggtaaaagtcaaatcattaaaaaatagagggagtaaaattgtcataatgaaatgcgagttgcatgctgccaaacacatcagttgccaactttttcttctacatgaaagcatcatcatcatgatgtaaaagttattcgtgtctcagctagggagcaaatgttctgaattggggcttttgttcttttactgctacagttcccagagatcacaaatggggttctcctcttgcagacatgggtgcactatgaagagggtgatttggagaaaatcatagacgcttctttgggtgatgacttggatgttgcacaagcctgtatgttcctgaaaattgggcttttgtgtacacaagatgtcacgaaacatcgacccacaatgtcgatggttgtccgcatgctaacaggtgaaatggatgttgagctggcgaagatcagcaagcccgcaataatcagtgactttatggatcttaaggtcaggagcatgaggaaagaagtggacatagtttcatcctcaacatccacattgctatcttccatcatggcacactcttctcctttgttgtcgcaagagacaacagaagcctccatgacattcaccgcgatatcagatcgtgagtgacccgaggttgaatgcagatacgaagattgcatcgacaaaaggtagtgtaggagaaatgttttccagaaatctttttgctggtttgatttttttttcgatgtatagatttacttcatttatagcctgaaaagcagtctagagtgaagaaagtacatgatagtatatcttgtttgttcatggaatgtctcctgtttttgaatgtgcaatggacacttcttcagttcttaattgtacacgacaccttgtctgctgcttgtgttctgagataaattgccaaaaagaaacctgtctacacgaacaatgttttttccactttcaacttgtaaaatgacagatcatattattgtcttccatgatgatcatctatccctgt
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| CDS seq | atgggttgtttttgtatatttggcaagagaagggcaacccgacagcaaagttctcagcataatgatgacccctctggtgatatgaatataacaaaattcacttacaaggagctttcaagggttactgaaaattttagcccgtctaataagattggtgagggaggttttggatctgtgtataagggaaagctaaggaatggaaagcttgttgccgtcaaggtgctatctttagagtcaagacagggagcgaaggaatttctgaacgaactcatggcaatttcaaacgtatctcatgaaaatcttgtcaagctttatggctattgtgtggaaggaaaccaaagaatccttgtctacaattatcttgaaaataatagccttgcacaaacacttttgggttatggccacagcaacatccagttcaactgggcaactcgagtaaatatttgtgttggcatcgcccgtggactaacatacctccatgaagttgtaaatccccacattgttcaccgggatatcaaagcaagcaatatacttctagataaaggtcttacgccgaaaatatctgattttggtttagcaaagcttttgcctccagatgcatcacatgttagcacaagggttgctggaacattaggttacttggctccagagtatgccattcgaggacaagtgacacggaagtcagatgtttatagttttggtgttctgttactagaaatagttagtgggagatccaacaccaatacaagattaccctatgaagatcagatacttcttgaaaggttcccagagatcacaaatggggttctcctcttgcagacatgggtgcactatgaagagggtgatttggagaaaatcatagacgcttctttgggtgatgacttggatgttgcacaagcctgtatgttcctgaaaattgggcttttgtgtacacaagatgtcacgaaacatcgacccacaatgtcgatggttgtccgcatgctaacaggtgaaatggatgttgagctggcgaagatcagcaagcccgcaataatcagtgactttatggatcttaaggtcaggagcatgaggaaagaagtggacatagtttcatcctcaacatccacattgctatcttccatcatggcacactcttctcctttgttgtcgcaagagacaacagaagcctccatgacattcaccgcgatatcagatcgtgagtga
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| Protein seq | MGCFCIFGKRRATRQQSSQHNDDPSGDMNITKFTYKELSRVTENFSPSNKIGEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNELMAISNVSHENLVKLYGYCVEGNQRILVYNYLENNSLAQTLLGYGHSNIQFNWATRVNICVGIARGLTYLHEVVNPHIVHRDIKASNILLDKGLTPKISDFGLAKLLPPDASHVSTRVAGTLGYLAPEYAIRGQVTRKSDVYSFGVLLLEIVSGRSNTNTRLPYEDQILLERFPEITNGVLLLQTWVHYEEGDLEKIIDASLGDDLDVAQACMFLKIGLLCTQDVTKHRPTMSMVVRMLTGEMDVELAKISKPAIISDFMDLKVRSMRKEVDIVSSSTSTLLSSIMAHSSPLLSQETTEASMTFTAISDRE |
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| Function | Cold-responsive protein kinase 1 [UniProtKB/Swiss-Prot:Q93YN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005270 | OsLima_02g0005270.02 | Chr02 | 3618756 | 3623089 | + | NAM | ||
| CDS seq | atgggttgtttttgtatatttggcaagagaagggcaacccgacagcaaagttctcagcataatgatgacccctctggtgatatgaatataacaaaattcacttacaaggagctttcaagggttactgaaaattttagcccgtctaataagattggtgagggaggttttggatctgtgtataagggaaagctaaggaatggaaagcttgttgccgtcaaggtgctatctttagagtcaagacagggagcgaaggaatttctgaacgaactcatggcaatttcaaacgtatctcatgaaaatcttgtcaagctttatggctattgtgtggaaggaaaccaaagaatccttgtctacaattatcttgaaaataatagccttgcacaaacacttttgggttatggccacagcaacatccagttcaactgggcaactcgagtaaatatttgtgttggcatcgcccgtggactaacatacctccatgaagttgtaaatccccacattgttcaccgggatatcaaagcaagcaatatacttctagataaaggtcttacgccgaaaatatctgattttggtttagcaaagcttttgcctccagatgcatcacatgttagcacaagggttgctggaacattaggttacttggctccagagtatgccattcgaggacaagtgacacggaagtcagatgtttatagttttggtgttctgttactagaaatagttagtgggagatccaacaccaatacaagattaccctatgaagatcagatacttcttgaaaggttcccagagatcacaaatggggttctcctcttgcagacatgggtgcactatgaagagggtgatttggagaaaatcatagacgcttctttgggtgatgacttggatgttgcacaagcctgtatgttcctgaaaattgggcttttgtgtacacaagatgtcacgaaacatcgacccacaatgtcgatggttgtccgcatgctaacaggtgaaatggatgttgagctggcgaagatcagcaagcccgcaataatcagtgactttatggatcttaaggtcaggagcatgaggaaagaagtggacatagtttcatcctcaacatccacattgctatcttccatcatggcacactcttctcctttgttgtcgcaagagacaacagaagcctccatgacattcaccgcgatatcagatcgtgagtga
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| Protein seq | MGCFCIFGKRRATRQQSSQHNDDPSGDMNITKFTYKELSRVTENFSPSNKIGEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNELMAISNVSHENLVKLYGYCVEGNQRILVYNYLENNSLAQTLLGYGHSNIQFNWATRVNICVGIARGLTYLHEVVNPHIVHRDIKASNILLDKGLTPKISDFGLAKLLPPDASHVSTRVAGTLGYLAPEYAIRGQVTRKSDVYSFGVLLLEIVSGRSNTNTRLPYEDQILLERFPEITNGVLLLQTWVHYEEGDLEKIIDASLGDDLDVAQACMFLKIGLLCTQDVTKHRPTMSMVVRMLTGEMDVELAKISKPAIISDFMDLKVRSMRKEVDIVSSSTSTLLSSIMAHSSPLLSQETTEASMTFTAISDRE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005270 | OsLima_02g0005270.04 | Chr02 | 3618756 | 3623089 | + | NAM | ||
| CDS seq | atggtgcagggaaagctaaggaatggaaagcttgttgccgtcaaggtgctatctttagagtcaagacagggagcgaaggaatttctgaacgaactcatggcaatttcaaacgtatctcatgaaaatcttgtcaagctttatggctattgtgtggaaggaaaccaaagaatccttgtctacaattatcttgaaaataatagccttgcacaaacacttttgggttatggccacagcaacatccagttcaactgggcaactcgagtaaatatttgtgttggcatcgcccgtggactaacatacctccatgaagttgtaaatccccacattgttcaccgggatatcaaagcaagcaatatacttctagataaaggtcttacgccgaaaatatctgattttggtttagcaaagcttttgcctccagatgcatcacatgttagcacaagggttgctggaacattaggttacttggctccagagtatgccattcgaggacaagtgacacggaagtcagatgtttatagttttggtgttctgttactagaaatagttagtgggagatccaacaccaatacaagattaccctatgaagatcagatacttcttgaaaggttcccagagatcacaaatggggttctcctcttgcagacatgggtgcactatgaagagggtgatttggagaaaatcatagacgcttctttgggtgatgacttggatgttgcacaagcctgtatgttcctgaaaattgggcttttgtgtacacaagatgtcacgaaacatcgacccacaatgtcgatggttgtccgcatgctaacaggtgaaatggatgttgagctggcgaagatcagcaagcccgcaataatcagtgactttatggatcttaaggtcaggagcatgaggaaagaagtggacatagtttcatcctcaacatccacattgctatcttccatcatggcacactcttctcctttgttgtcgcaagagacaacagaagcctccatgacattcaccgcgatatcagatcgtgagtga
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| Protein seq | MVQGKLRNGKLVAVKVLSLESRQGAKEFLNELMAISNVSHENLVKLYGYCVEGNQRILVYNYLENNSLAQTLLGYGHSNIQFNWATRVNICVGIARGLTYLHEVVNPHIVHRDIKASNILLDKGLTPKISDFGLAKLLPPDASHVSTRVAGTLGYLAPEYAIRGQVTRKSDVYSFGVLLLEIVSGRSNTNTRLPYEDQILLERFPEITNGVLLLQTWVHYEEGDLEKIIDASLGDDLDVAQACMFLKIGLLCTQDVTKHRPTMSMVVRMLTGEMDVELAKISKPAIISDFMDLKVRSMRKEVDIVSSSTSTLLSSIMAHSSPLLSQETTEASMTFTAISDRE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005270 | OsLima_02g0005270.03 | Chr02 | 3618756 | 3623089 | + | NAM | ||
| CDS seq | atgggttgtttttgtatatttggcaagagaagggcaacccgacagcaaagttctcagcataatgatgacccctctggtgatatgaatataacaaaattcacttacaaggagctttcaagggttactgaaaattttagcccgtctaataagattggtgagggaggttttggatctgtgtataagggaaagctaaggaatggaaagcttgttgccgtcaaggtgctatctttagagtcaagacagggagcgaaggaatttctgaacgaactcatggcaatttcaaacgtatctcatgaaaatcttgtcaagctttatggctattgtgtggaaggaaaccaaagaatccttgtctacaattatcttgaaaataatagccttgcacaaacacttttgggttatggccacagcaacatccagttcaactgggcaactcgagtaaatatttgtgttggcatcgcccgtggactaacatacctccatgaagttgtaaatccccacattgttcaccgggatatcaaagcaagcaatatacttctagataaaggtcttacgccgaaaatatctgattttggtttagcaaagcttttgcctccagatgcatcacatgttagcacaagggttgctggaacattaggttacttggctccagagtatgccattcgaggacaagtgacacggaagtcagatgtttatagttttggtgttctgttactagaaatagttagtgggagatccaacaccaatacaagattaccctatgaagatcagatacttcttgaaaggacatgggtgcactatgaagagggtgatttggagaaaatcatagacgcttctttgggtgatgacttggatgttgcacaagcctgtatgttcctgaaaattgggcttttgtgtacacaagatgtcacgaaacatcgacccacaatgtcgatggttgtccgcatgctaacaggtgaaatggatgttgagctggcgaagatcagcaagcccgcaataatcagtgactttatggatcttaaggtcaggagcatgaggaaagaagtggacatagtttcatcctcaacatccacattgctatcttccatcatggcacactcttctcctttgttgtcgcaagagacaacagaagcctccatgacattcaccgcgatatcagatcgtgagtga
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| Protein seq | MGCFCIFGKRRATRQQSSQHNDDPSGDMNITKFTYKELSRVTENFSPSNKIGEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNELMAISNVSHENLVKLYGYCVEGNQRILVYNYLENNSLAQTLLGYGHSNIQFNWATRVNICVGIARGLTYLHEVVNPHIVHRDIKASNILLDKGLTPKISDFGLAKLLPPDASHVSTRVAGTLGYLAPEYAIRGQVTRKSDVYSFGVLLLEIVSGRSNTNTRLPYEDQILLERTWVHYEEGDLEKIIDASLGDDLDVAQACMFLKIGLLCTQDVTKHRPTMSMVVRMLTGEMDVELAKISKPAIISDFMDLKVRSMRKEVDIVSSSTSTLLSSIMAHSSPLLSQETTEASMTFTAISDRE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005270 | OsLima_02g0005270.01 | Chr02 | 3618554 | 3622991 | + | NAM | ||
| CDS seq | atgccacaatgcgcgatcgcgtcccgagtccgacccgccgagccgccgccgccgcgtcgagcccgagccgcgccacgcgtccgtctctctgacaggtgggccccacgcggccaacgcggccaccacgtggtcaacggtttgaccggccagcctatcctcctgctcctcttcttcttgttcttcttcttcttcttgctcccgtttcccgattcccactgcggagaagtcaaatacggccacctggttcgctacaacccaagcccaccgccgctgcgaagctgccattcgccgacgaacagctcgccggagaggctgctttcccggagctttgagcttcttggactagctctgctcggattcttgcttggttgggattatcaggacatgatggcagctgttgaaaattga
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| Protein seq | MPQCAIASRVRPAEPPPPRRARAAPRVRLSDRWAPRGQRGHHVVNGLTGQPILLLLFFLFFFFFLLPFPDSHCGEVKYGHLVRYNPSPPPLRSCHSPTNSSPERLLSRSFELLGLALLGFLLGWDYQDMMAAVEN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 3621587 | 3622333 | + | OsLima_02g0005270.02,OsLima_02g0005270.04 | OsLima_02g0005270.01,OsLima_02g0005270.03,OsLima_02g0005270.02,OsLima_02g0005270.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.217107 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0165100 | RBH | 0.242596 | 0.0 | 1.280424 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06930 | RBH | 0.137432 | 0.0 | 0.198238 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0165100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005010 | RBH | 0.0 | 6.791449 | 2.410574 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005140 | RBH | 0.061881 | 2.679506 | 0.307361 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004960 | RBH | 0.202864 | 13.996657 | 2.333197 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004850 | RBH | 0.0 | 0.259767 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004910 | RBH | 1.913120 | 11.567667 | 2.482682 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0059700 | RBH | 2.6307055 | 98.3797115 | 7.137566 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004870 | RBH | 0.041840 | 0.705991 | 0.126574 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0062400 | RBH | 3.508889 | 94.3203545 | 6.3845345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026130 | RBH | 0.052282 | 0.147040 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004850 | RBH | 0.175723 | 3.218766 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005170 | RBH | 0.000000 | 13.736813 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005100 | RBH | 0.285245 | 0.870054 | 0.459925 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004880 | RBH | 0.113689 | 5.686010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005010 | RBH | 0.305971 | 1.836712 | 0.682338 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004970 | RBH | 0.251544 | 15.327746 | 0.000000 |
