Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0005230 | OGI:02010850 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3580326-3583095 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgccgccgccgtcgccgccgcacgccgcggcgcttccggcgtgggcggcggagaacgcgctcttccgccgccaccgccgcctccgcccgctcctcctccccgccgcttccctccgcgccttcgctcctcttctctcccactgcatcgtctccggcctcgcgcgcaaccccttcgtcgcctcgcgcctcctcgtcgcctcctcgcgcctctccctccggttctccctcctgctcctctcccacctccccgcctcctccctctcgcccttctccttcaactccctcatccgcgcctcgcctccccgtctcgccctccagctgttcgaccaaatgcgccaccgaggcgttaccacggatcgttacacgctcccgttcttgatccatgcctgttcttccggtgatcgtcctctctgcgaatccctgcacgggcaaagcctccgccttggttacagttccgtgctcttcacgcagacggcgctgatgaacgcctactttgcttgccggtttgaggttgccgctcgcagggtgtttgatgaaatgcaggcgaaggatgtggttgcatggacgggcatggtgtcgggatacgtggactctgggatgttccttcgaggtgtcgaggtatttcaggagatgagaagctgcgaggaggctgttaggcctaatgtggcaacggttgtgtcggttgcttctgcgtgtgctggactgggctccctggagtatgccaaagggttgcatgcatatgtggagaaggtggggttggaaggagagttgattgtgaagaattcgttgatcgatatgtatggaaagtgtggcagcattgagttagctcgtggcttgtttggtttgatgcctcagaaggacctgcattcatggacggccatgatttcagggttggcttctcatggccatggcaaagaggcagttgctttattctttagcatgaaagaggcgggagtattgccagattcgactacctttgttgtggttctttctgcctgtagccatgctggattggtggatgagggaatatctatcttcaattccatggagaatgagtacaaggtcacccctgatatcaagcattacggttgcatggtagatcttttcagcagggcagggcttattgcacgtggttatcagtttattgaaagcatgccttttgagccaaacttggcaattctcggggcattattgagtgcttgcagtatcaacaatgaattggatattggggaactagtgatcaagaggattgagtctgttcgctcagataaaggaggtgctggtgtgcttctgtccaacatttatgctaaccaaaacctgtggcatgaagttgattctcttagaaggaagataagagatgacactatttgcagaaagccacctggccagagtgtgattacatcagatgtttctttcatggcttcttgagcagggtttcaacacatccactctcaatgtagcttctctcattattgggcaggtaaggtaactagtgatttttctaaaagtatatataacctggagcatattggataatttgtcatcttcgatttgtttcaagattcttatggtttgactgttaagagagaaatgaatgttaagttgcttaattaaatactagccctgttctacaaacttgaatttgagtgtagtgattggttaattagtaccttgatccatgtaaggcacccttgtattgataagtaattaatgttaactttggaacggacaggtttaattgccataatcttctgtacttcgatagagataacaagacaaaattcttctaacaacttagggaggagttgtcaagcttgatataggtgtacctaccttccttgatcatcatcaacaagctctggtggtacttggtgaaccctaagatcgtagctgcaccgttttacatgttcgattatttcatgtgtttagtattgtattatgctcctgagcttttacttagctagtctcccaagtacttcaatatttttggtattggtttgaaaacgcatttggttacctagtatctccaatcgcttatcaattcccagtctattttgcttcaaatgcagatccgataacaaaacctacctcactgatccgccattgccgtcgctcttgattggcaaacgacacatttctgaagcagcatggaagcacatcaacttccccttctgtgttggaagaacaagaaatatgccagcttattcagtctccgtccaaaagctagtgcatactagagcgcctctactcccaggtgataatgctttcttgcagaaatactaccatgcataaattgttgacaaattgcaatgctggtgtttatgcattcagcaaagcgtgtgggggccggatgatgtcagtgaaagcttatttgctcctgcaagacccacccacatgccactcacgaaagaaatcaagggaggaatgtcagcggcagagaggcgcagaatcttacttttcaccggcaagtagttttgttggttattttggtcgtcaacactaatggctggtttttgcttactagtatatgatttggactcttgttggttgatgccggatggatggtgattggggtaaaggagcagctaccctggccctgcaacttccaccataacaaacatgagtagaggcagagcttccatgggttcttgggagaagcttctcttgtgcatgcactgaaccaacaagcatatcatatcggcttatatattattctcctgtaactttccagaatcttatctaacctggatatcacaacactgggcat
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| CDS seq | atggcgccgccgccgtcgccgccgcacgccgcggcgcttccggcgtgggcggcggagaacgcgctcttccgccgccaccgccgcctccgcccgctcctcctccccgccgcttccctccgcgccttcgctcctcttctctcccactgcatcgtctccggcctcgcgcgcaaccccttcgtcgcctcgcgcctcctcgtcgcctcctcgcgcctctccctccggttctccctcctgctcctctcccacctccccgcctcctccctctcgcccttctccttcaactccctcatccgcgcctcgcctccccgtctcgccctccagctgttcgaccaaatgcgccaccgaggcgttaccacggatcgttacacgctcccgttcttgatccatgcctgttcttccggtgatcgtcctctctgcgaatccctgcacgggcaaagcctccgccttggttacagttccgtgctcttcacgcagacggcgctgatgaacgcctactttgcttgccggtttgaggttgccgctcgcagggtgtttgatgaaatgcaggcgaaggatgtggttgcatggacgggcatggtgtcgggatacgtggactctgggatgttccttcgaggtgtcgaggtatttcaggagatgagaagctgcgaggaggctgttaggcctaatgtggcaacggttgtgtcggttgcttctgcgtgtgctggactgggctccctggagtatgccaaagggttgcatgcatatgtggagaaggtggggttggaaggagagttgattgtgaagaattcgttgatcgatatgtatggaaagtgtggcagcattgagttagctcgtggcttgtttggtttgatgcctcagaaggacctgcattcatggacggccatgatttcagggttggcttctcatggccatggcaaagaggcagttgctttattctttagcatgaaagaggcgggagtattgccagattcgactacctttgttgtggttctttctgcctgtagccatgctggattggtggatgagggaatatctatcttcaattccatggagaatgagtacaaggtcacccctgatatcaagcattacggttgcatggtagatcttttcagcagggcagggcttattgcacgtggttatcagtttattgaaagcatgccttttgagccaaacttggcaattctcggggcattattgagtgcttgcagtatcaacaatgaattggatattggggaactagtgatcaagaggattgagtctgttcgctcagataaaggaggtgctggtgtgcttctgtccaacatttatgctaaccaaaacctgtggcatgaagttgattctcttagaaggaagataagagatgacactatttgcagaaagccacctggccagagtatccgataa
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| Protein seq | MAPPPSPPHAAALPAWAAENALFRRHRRLRPLLLPAASLRAFAPLLSHCIVSGLARNPFVASRLLVASSRLSLRFSLLLLSHLPASSLSPFSFNSLIRASPPRLALQLFDQMRHRGVTTDRYTLPFLIHACSSGDRPLCESLHGQSLRLGYSSVLFTQTALMNAYFACRFEVAARRVFDEMQAKDVVAWTGMVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGSLEYAKGLHAYVEKVGLEGELIVKNSLIDMYGKCGSIELARGLFGLMPQKDLHSWTAMISGLASHGHGKEAVALFFSMKEAGVLPDSTTFVVVLSACSHAGLVDEGISIFNSMENEYKVTPDIKHYGCMVDLFSRAGLIARGYQFIESMPFEPNLAILGALLSACSINNELDIGELVIKRIESVRSDKGGAGVLLSNIYANQNLWHEVDSLRRKIRDDTICRKPPGQSIR |
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| Function | Pentatricopeptide repeat-containing protein At4g21065 [UniProtKB/Swiss-Prot:A8MQA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005230 | OsLima_02g0005230.01 | Chr02 | 3580326 | 3583095 | + | NAM | ||
| CDS seq | atggcgccgccgccgtcgccgccgcacgccgcggcgcttccggcgtgggcggcggagaacgcgctcttccgccgccaccgccgcctccgcccgctcctcctccccgccgcttccctccgcgccttcgctcctcttctctcccactgcatcgtctccggcctcgcgcgcaaccccttcgtcgcctcgcgcctcctcgtcgcctcctcgcgcctctccctccggttctccctcctgctcctctcccacctccccgcctcctccctctcgcccttctccttcaactccctcatccgcgcctcgcctccccgtctcgccctccagctgttcgaccaaatgcgccaccgaggcgttaccacggatcgttacacgctcccgttcttgatccatgcctgttcttccggtgatcgtcctctctgcgaatccctgcacgggcaaagcctccgccttggttacagttccgtgctcttcacgcagacggcgctgatgaacgcctactttgcttgccggtttgaggttgccgctcgcagggtgtttgatgaaatgcaggcgaaggatgtggttgcatggacgggcatggtgtcgggatacgtggactctgggatgttccttcgaggtgtcgaggtatttcaggagatgagaagctgcgaggaggctgttaggcctaatgtggcaacggttgtgtcggttgcttctgcgtgtgctggactgggctccctggagtatgccaaagggttgcatgcatatgtggagaaggtggggttggaaggagagttgattgtgaagaattcgttgatcgatatgtatggaaagtgtggcagcattgagttagctcgtggcttgtttggtttgatgcctcagaaggacctgcattcatggacggccatgatttcagggttggcttctcatggccatggcaaagaggcagttgctttattctttagcatgaaagaggcgggagtattgccagattcgactacctttgttgtggttctttctgcctgtagccatgctggattggtggatgagggaatatctatcttcaattccatggagaatgagtacaaggtcacccctgatatcaagcattacggttgcatggtagatcttttcagcagggcagggcttattgcacgtggttatcagtttattgaaagcatgccttttgagccaaacttggcaattctcggggcattattgagtgcttgcagtatcaacaatgaattggatattggggaactagtgatcaagaggattgagtctgttcgctcagataaaggaggtgctggtgtgcttctgtccaacatttatgctaaccaaaacctgtggcatgaagttgattctcttagaaggaagataagagatgacactatttgcagaaagccacctggccagagtatccgataa
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| Protein seq | MAPPPSPPHAAALPAWAAENALFRRHRRLRPLLLPAASLRAFAPLLSHCIVSGLARNPFVASRLLVASSRLSLRFSLLLLSHLPASSLSPFSFNSLIRASPPRLALQLFDQMRHRGVTTDRYTLPFLIHACSSGDRPLCESLHGQSLRLGYSSVLFTQTALMNAYFACRFEVAARRVFDEMQAKDVVAWTGMVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGSLEYAKGLHAYVEKVGLEGELIVKNSLIDMYGKCGSIELARGLFGLMPQKDLHSWTAMISGLASHGHGKEAVALFFSMKEAGVLPDSTTFVVVLSACSHAGLVDEGISIFNSMENEYKVTPDIKHYGCMVDLFSRAGLIARGYQFIESMPFEPNLAILGALLSACSINNELDIGELVIKRIESVRSDKGGAGVLLSNIYANQNLWHEVDSLRRKIRDDTICRKPPGQSIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.039581 | 0.058055 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0164600 | RBH | 1.109358 | 0.584619 | 0.252419 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06880 | RBH | 0.703486 | 0.368718 | 0.060931 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0164600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004970 | RBH | 0.056591 | 0.000000 | 1.377146 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005100 | RBH | 0.0 | 0.000000 | 0.627415 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004920 | RBH | 0.0 | 2.096344 | 3.129815 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004810 | RBH | 0.0 | 0.028183 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004870 | RBH | 1.918895 | 4.124575 | 3.225271 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0059200 | RBH | 0.557303 | 1.73811 | 0.7338995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004830 | RBH | 0.037864 | 0.000000 | 0.037506 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0061900 | RBH | 0.680185 | 1.904836 | 2.8698425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004810 | RBH | 0.0 | 1.357607 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005130 | RBH | 0.0 | 3.016830 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005060 | RBH | 0.282336 | 0.186791 | 0.117428 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004840 | RBH | 0.067095 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004970 | RBH | 0.149389 | 0.000000 | 0.285541 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004930 | RBH | 0.197991 | 3.481368 | 0.329818 |
