Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0005160 | OGI:02010550 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3510631-3513372 | ||||||||
| Gene Symbol | NBS-STR1, NBS-Str1, OsNBS-Str1 | ||||||||||
| DNA seq | atggcggaggcagcagtggtcctagctcttggcaagcttgttacctctttcggagtatcaccactaaggactttcatagagaaagaagccacactgctgcaagatctaccacagatagcaaagcacatcgagagggaattagacatgattcatcatttcttgagacaggttggaacaaaaatctacaacaataaagttcttgaaggctggatagtaagggtgcgaaaggtcgcttactgtgttgaggacataatagatgagtactgctataatatcactctttttcaggatgaaggtcgcttcaagagggtaattcacacgaccttccatgcaaatgtttttcatcaaatcgctgttgggctgaaagacatcgaggaagagatcaaacacctgtcacagctgaaaagggactatcgagaaatgttcaacgagttactcgacaacgctagtgatagtgctgatattcacctcctctcatccaatggttctctacattccataaaagaagatgacattgttgggatgaaagaagacatggaactgcttgataaatggctagatcccaaggaactaactcgaatagtaatatcagtgtggggttttggtggattgggtaagacaaccctagtcaggaaggtctacgattgggagaaaggactgaaaagctttgattgttattcatggattacagtatcacataattacaacattgatgctatatcaaggcagttgattcaagagttgagtgaggaccaaagcaaagttcctcctgaccttggtactgtgcaccgtggtaagctgaaagaagcattaaaggaggtattatcaaataagaagtacttgattgttcttgatgatgtatgggatacaagagcctttaatgagctatctgattcattgatggatgataacaaaggaagtcggataattatcacaaccaggaacaatgatgttgcttccttggctcaagaactgtacaagatgaagcttaatccactaggcgatgatgatgcatttgaattatttcagagaaggtgtttccagaaaaacaatactgagtgcccgcctcacttgcaggaattgtctaggcagattgtgaacaagtgtggaggcttgccattggcaattaatgcaataggcaatgtattggctgtacaaggagcaaaagagatagtatggagaagaataaataatcaattcaagtgcgaattggaggataaccctggcctagacgaagtaaggagtgcattgagcatcagcttcatgtatctgccgaggcatctcaagaactgctttttgtattgcagtatgttcccacaagattatattttcactcgtgagctccttatcaagctatggatagtagagggttttgtaacacaaagagggaatagtacactggaggaggtagcagatggctacttcattgagctgatccaacaaagcatgatgaaacttgttgagaatgatgagatcggcagagtagtaagctgcagaatgcatgatatcgtgcgagaattagcactctccttttctaggaaggaaagatttggtctggcggacataaacattgaaactgagaacaaagatgatgtgcgccgcctactggtgtcaaaccatgagcaggtgaatcagctaataagatcgagcatcgaacttcctcatcttcggacattcatcgcagccaacaaagttgcaaattatcagttattatgcttactaatttccaggtgtaaatacctagctgtcctggagttgagagactcacccctggacaggattccagaaaatattggggatttgttcaacttgcgctacattggcttgaggaggacacatgttaagtccctcccgagatcaattaaaaagcttaccaatttggaaactctggacatgaaatcaacaaacattgaaactctcccaaaagagatagctaaactaaagaagctgaggcacatctttgccgagaaattggatgatccagaagagaggcaattacgctatttccgtggtgtgaagtttccagacggtgttttcaatttggtacagctacagactctgaagactgtcgaagcaactaaaaaatcggtgaagctactgaaatccttgcctgatctgaggcttctgtgcgtcgagaatgtacgccgtgctgattgtgcaacactgttttcatccttgtcgaatatgaaccacctttacagttttctcatcagtgccaatgatctgaatgaaccactggattttgatgctttcaatcctaaatgtacaaagctagagaagctctttatcagaggatgctgggacaacgagacattctggaaaccagtgttccgtgactatggtgcaaatatcaagtacctgacactcaccttttgcaaaaatgacgccgacccactcccgtcgatctcgtcgagcctgccaaatctgatattttttagcatacgcaggggatgctgggctgaggagataactctccgtgaaggatggtttcctcatctgaagactctttgcgtaggaaacatggggctgagaaggctttgcattgaggaaggtgccgttattaggctggaagtgctgcttctgctatccctcacgtctctcaaggaggttcctaaaggtttggaccttgtttcatccctcaagaagatcaatgtctcgatgcagcaccctgagttcaaggcagagtgggaaagaggaaactggaagacgaaattgcactatgtccaagaaatacgcatgtaa
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| CDS seq | atggcggaggcagcagtggtcctagctcttggcaagcttgttacctctttcggagtatcaccactaaggactttcatagagaaagaagccacactgctgcaagatctaccacagatagcaaagcacatcgagagggaattagacatgattcatcatttcttgagacaggttggaacaaaaatctacaacaataaagttcttgaaggctggatagtaagggtgcgaaaggtcgcttactgtgttgaggacataatagatgagtactgctataatatcactctttttcaggatgaaggtcgcttcaagagggtaattcacacgaccttccatgcaaatgtttttcatcaaatcgctgttgggctgaaagacatcgaggaagagatcaaacacctgtcacagctgaaaagggactatcgagaaatgttcaacgagttactcgacaacgctagtgatagtgctgatattcacctcctctcatccaatggttctctacattccataaaagaagatgacattgttgggatgaaagaagacatggaactgcttgataaatggctagatcccaaggaactaactcgaatagtaatatcagtgtggggttttggtggattgggtaagacaaccctagtcaggaaggtctacgattgggagaaaggactgaaaagctttgattgttattcatggattacagtatcacataattacaacattgatgctatatcaaggcagttgattcaagagttgagtgaggaccaaagcaaagttcctcctgaccttggtactgtgcaccgtggtaagctgaaagaagcattaaaggaggtattatcaaataagaagtacttgattgttcttgatgatgtatgggatacaagagcctttaatgagctatctgattcattgatggatgataacaaaggaagtcggataattatcacaaccaggaacaatgatgttgcttccttggctcaagaactgtacaagatgaagcttaatccactaggcgatgatgatgcatttgaattatttcagagaaggtgtttccagaaaaacaatactgagtgcccgcctcacttgcaggaattgtctaggcagattgtgaacaagtgtggaggcttgccattggcaattaatgcaataggcaatgtattggctgtacaaggagcaaaagagatagtatggagaagaataaataatcaattcaagtgcgaattggaggataaccctggcctagacgaagtaaggagtgcattgagcatcagcttcatgtatctgccgaggcatctcaagaactgctttttgtgtaaatacctagctgtcctggagttgagagactcacccctggacaggattccagaaaatattggggatttgttcaacttgcgctacattggcttgaggaggacacatgttaagtccctcccgagatcaattaaaaagcttaccaatttggaaactctggacatgaaatcaacaaacattgaaactctcccaaaagagatagctaaactaaagaagctgaggcacatctttgccgagaaattggatgatccagaagagaggcaattacgctatttccgtggtgtgaagtttccagacggtgttttcaatttggtacagctacagactctgaagactgtcgaagcaactaaaaaatcggtgaagctactgaaatccttgcctgatctgaggcttctgtgcgtcgagaatgtacgccgtgctgattgtgcaacactgttttcatccttgtcgaatatgaaccacctttacagttttctcatcagtgccaatgatctgaatgaaccactggattttgatgctttcaatcctaaatgtacaaagctagagaagctctttatcagaggatgctgggacaacgagacattctggaaaccagtgttccgtgactatggtgcaaatatcaagggatgctgggctgaggagataactctccgtgaaggatggtttcctcatctgaagactctttgcgtaggaaacatggggctgagaaggctttgcattgaggaaggtgccgttattaggctggaagtgctgcttctgctatccctcacgtctctcaaggaggttcctaaaggtttggaccttgtttcatccctcaagaagatcaatgtctcgatgcagcaccctgagttcaaggcagagtgggaaagaggaaactggaagacgaaattgcactatgtccaagaaatacgcatgtaa
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| Protein seq | MAEAAVVLALGKLVTSFGVSPLRTFIEKEATLLQDLPQIAKHIERELDMIHHFLRQVGTKIYNNKVLEGWIVRVRKVAYCVEDIIDEYCYNITLFQDEGRFKRVIHTTFHANVFHQIAVGLKDIEEEIKHLSQLKRDYREMFNELLDNASDSADIHLLSSNGSLHSIKEDDIVGMKEDMELLDKWLDPKELTRIVISVWGFGGLGKTTLVRKVYDWEKGLKSFDCYSWITVSHNYNIDAISRQLIQELSEDQSKVPPDLGTVHRGKLKEALKEVLSNKKYLIVLDDVWDTRAFNELSDSLMDDNKGSRIIITTRNNDVASLAQELYKMKLNPLGDDDAFELFQRRCFQKNNTECPPHLQELSRQIVNKCGGLPLAINAIGNVLAVQGAKEIVWRRINNQFKCELEDNPGLDEVRSALSISFMYLPRHLKNCFLCKYLAVLELRDSPLDRIPENIGDLFNLRYIGLRRTHVKSLPRSIKKLTNLETLDMKSTNIETLPKEIAKLKKLRHIFAEKLDDPEERQLRYFRGVKFPDGVFNLVQLQTLKTVEATKKSVKLLKSLPDLRLLCVENVRRADCATLFSSLSNMNHLYSFLISANDLNEPLDFDAFNPKCTKLEKLFIRGCWDNETFWKPVFRDYGANIKGCWAEEITLREGWFPHLKTLCVGNMGLRRLCIEEGAVIRLEVLLLLSLTSLKEVPKGLDLVSSLKKINVSMQHPEFKAEWERGNWKTKLHYVQEIRM |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0005160 | OsLima_02g0005160.01 | Chr02 | 3510631 | 3513372 | + | NAM | ||
| CDS seq | atggcggaggcagcagtggtcctagctcttggcaagcttgttacctctttcggagtatcaccactaaggactttcatagagaaagaagccacactgctgcaagatctaccacagatagcaaagcacatcgagagggaattagacatgattcatcatttcttgagacaggttggaacaaaaatctacaacaataaagttcttgaaggctggatagtaagggtgcgaaaggtcgcttactgtgttgaggacataatagatgagtactgctataatatcactctttttcaggatgaaggtcgcttcaagagggtaattcacacgaccttccatgcaaatgtttttcatcaaatcgctgttgggctgaaagacatcgaggaagagatcaaacacctgtcacagctgaaaagggactatcgagaaatgttcaacgagttactcgacaacgctagtgatagtgctgatattcacctcctctcatccaatggttctctacattccataaaagaagatgacattgttgggatgaaagaagacatggaactgcttgataaatggctagatcccaaggaactaactcgaatagtaatatcagtgtggggttttggtggattgggtaagacaaccctagtcaggaaggtctacgattgggagaaaggactgaaaagctttgattgttattcatggattacagtatcacataattacaacattgatgctatatcaaggcagttgattcaagagttgagtgaggaccaaagcaaagttcctcctgaccttggtactgtgcaccgtggtaagctgaaagaagcattaaaggaggtattatcaaataagaagtacttgattgttcttgatgatgtatgggatacaagagcctttaatgagctatctgattcattgatggatgataacaaaggaagtcggataattatcacaaccaggaacaatgatgttgcttccttggctcaagaactgtacaagatgaagcttaatccactaggcgatgatgatgcatttgaattatttcagagaaggtgtttccagaaaaacaatactgagtgcccgcctcacttgcaggaattgtctaggcagattgtgaacaagtgtggaggcttgccattggcaattaatgcaataggcaatgtattggctgtacaaggagcaaaagagatagtatggagaagaataaataatcaattcaagtgcgaattggaggataaccctggcctagacgaagtaaggagtgcattgagcatcagcttcatgtatctgccgaggcatctcaagaactgctttttgtgtaaatacctagctgtcctggagttgagagactcacccctggacaggattccagaaaatattggggatttgttcaacttgcgctacattggcttgaggaggacacatgttaagtccctcccgagatcaattaaaaagcttaccaatttggaaactctggacatgaaatcaacaaacattgaaactctcccaaaagagatagctaaactaaagaagctgaggcacatctttgccgagaaattggatgatccagaagagaggcaattacgctatttccgtggtgtgaagtttccagacggtgttttcaatttggtacagctacagactctgaagactgtcgaagcaactaaaaaatcggtgaagctactgaaatccttgcctgatctgaggcttctgtgcgtcgagaatgtacgccgtgctgattgtgcaacactgttttcatccttgtcgaatatgaaccacctttacagttttctcatcagtgccaatgatctgaatgaaccactggattttgatgctttcaatcctaaatgtacaaagctagagaagctctttatcagaggatgctgggacaacgagacattctggaaaccagtgttccgtgactatggtgcaaatatcaagggatgctgggctgaggagataactctccgtgaaggatggtttcctcatctgaagactctttgcgtaggaaacatggggctgagaaggctttgcattgaggaaggtgccgttattaggctggaagtgctgcttctgctatccctcacgtctctcaaggaggttcctaaaggtttggaccttgtttcatccctcaagaagatcaatgtctcgatgcagcaccctgagttcaaggcagagtgggaaagaggaaactggaagacgaaattgcactatgtccaagaaatacgcatgtaa
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| Protein seq | MAEAAVVLALGKLVTSFGVSPLRTFIEKEATLLQDLPQIAKHIERELDMIHHFLRQVGTKIYNNKVLEGWIVRVRKVAYCVEDIIDEYCYNITLFQDEGRFKRVIHTTFHANVFHQIAVGLKDIEEEIKHLSQLKRDYREMFNELLDNASDSADIHLLSSNGSLHSIKEDDIVGMKEDMELLDKWLDPKELTRIVISVWGFGGLGKTTLVRKVYDWEKGLKSFDCYSWITVSHNYNIDAISRQLIQELSEDQSKVPPDLGTVHRGKLKEALKEVLSNKKYLIVLDDVWDTRAFNELSDSLMDDNKGSRIIITTRNNDVASLAQELYKMKLNPLGDDDAFELFQRRCFQKNNTECPPHLQELSRQIVNKCGGLPLAINAIGNVLAVQGAKEIVWRRINNQFKCELEDNPGLDEVRSALSISFMYLPRHLKNCFLCKYLAVLELRDSPLDRIPENIGDLFNLRYIGLRRTHVKSLPRSIKKLTNLETLDMKSTNIETLPKEIAKLKKLRHIFAEKLDDPEERQLRYFRGVKFPDGVFNLVQLQTLKTVEATKKSVKLLKSLPDLRLLCVENVRRADCATLFSSLSNMNHLYSFLISANDLNEPLDFDAFNPKCTKLEKLFIRGCWDNETFWKPVFRDYGANIKGCWAEEITLREGWFPHLKTLCVGNMGLRRLCIEEGAVIRLEVLLLLSLTSLKEVPKGLDLVSSLKKINVSMQHPEFKAEWERGNWKTKLHYVQEIRM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.170084 | 0.298282 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0191000 | SBH | 0.011793 | 0.047168 | 0.323549 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09790 | SBH | 0.085812 | 0.043762 | 0.137997 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0191000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006880 | SBH | 0.0 | 0.666139 | 0.494445 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005040 | RBH | 0.564572 | 0.618330 | 2.325935 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004860 | RBH | 0.430685 | 2.510721 | 1.437798 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004750 | RBH | 0.063837 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004810 | RBH | 1.967722 | 11.401700 | 10.824773 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0057900 | RBH | 1.0492005 | 2.486378 | 1.734444 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004770 | RBH | 0.152905 | 0.252981 | 0.599237 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0060800 | RBH | 1.803611 | 1.916576 | 3.7511005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0024060 | RBH | 0.132027 | 0.122669 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004750 | RBH | 0.338983 | 11.480566 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005060 | RBH | 0.000000 | 9.798729 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005000 | RBH | 0.617908 | 0.076647 | 0.666690 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004770 | RBH | 0.0 | 1.155145 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006920 | SBH | 0.548436 | 0.220484 | 0.276716 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006890 | SBH | 0.123538 | 1.537946 | 0.306049 |
