Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0004650 | OGI:02009650 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3221943-3225256 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacctcatctccgccagacccgccgccaccttctccccaaccatgagtgatgggttgggcaaacgggagctgccagcgaagcgagagggcggcgccgcggcgagcagcggaagcctcgaggttagccatgtcttcttccccctcctgatttgcgccgtggccaggaaggggggaaatccccccgaatcgaaacccccgcagccggccgatgaacagctcgcgcaaatcaatcgcgtcgatgtttctctctgtagctgcctcttcgaaggaaggaaaggattgtgcagagtagctgcttgatcggttcatgtcagatttgggatgtggctgcatgagttttttctgctacgatttctgacatttctcaatgcagtattgctgtttcaccagttgcagatttgtgatcccctcatggcacattgcagagaaaattattgaaaagtaatacgagtatgtttccattcacgtataatattatcaagattcatttactaacgtatttcagatttacatcagttcacttctgttccttctgattttctactttcttgagcagactgtattaactggatttttaccaacaggtcacgagctggtcaaatcgggtttgcctggggtattcatcctgccggggctggagccactgaatcggccttgctgaattgaaatttgaaaaccaatcaagatcaccacacagttaagatggttatagtaattacaaagtcgcggctgttgcttgcttgtttcagttctatgacccattgcatatctacaagccattaatccagtacacgttattgactgtctctatcgtgatcagttcaaccgaaaatatctggatagaactatctgatcatatagcactcctactccaaagaatacacaaaaagcaatcacaaagatgaccttgttgatgtactcttttgttgagtttggggaagacaaatctacttctgctacattgcaacggtgcaaaagtatcgggctgcatagctctgggtttccagcaaaactagaacttggaaatgtgctgaactggcctccaattggtacagacccttttagatcattgtgggaaacattaaattcggaaaggaagtgaaggttcaccagtgctggagggattgcacctgtcagatggttgtatgacaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccaatctccatcgggatcgcaccagtgaatttgttattacctagattcaacattttagggaaagcagtaactgtacggtactgaaaacacagacatgcgcctgcatacactggaaacggaaaggctcttgggtctgagttatctgcaatcttatctgattttagcattggtatatccattagtgcttgtggtatttctcctgaaaggctattattggatatgtctacatacttaaggaagtttaggctattgatccaggttggtataggtccactgagttgattgttggataaatctaaaactggcaaatttccgagctttgtgagccaactaggtatttttccagtcaatgcacaatcatgtatgctaataccaaaaatattctcgaaaccatcaattgtttcatcctgtggcatagcttcgtgcataaagtttcccccaattaacaagacattgaggttccttaagctcttgagtatgtgaagagtatttttgatatttgtaaaattgttgtaggaaagagataagaaggtgatagaattcagattccgtatgttatttgtcaactggccgtgaagcctattggaagatagccgcaaccaagtcaaattactacatgagtatatgctttctggaattgtgccggtgaagttattcgagccaaaatctaatgttttcagattgggtagattggagtagttaaccttggcaagctcacccgtcaacttgtttctcctgaggttgatggttactagatttgtgcaatctcccaatgatgatggcagctctccagataagttgttgctgcaaatgtgaagctcctctagtcttttcaactggcctatagaatttgggatcttgccactgaatctattccatccaagatcaacaaaaacaagattgatgagctttacgatgagagcatcatcaattgttccttgcaacccattgttagcgaaagagaggtactccaatgatgtggcattgaagagatcacctgggagaggccctctgatgttgttggcattagccttgagaagtctaagggcagaacatttacctattccaggggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatggcgaattgctgcagaaggaggtaggtatgtgcccggtaaaactgttgttgctcgcgttgattgcgaccaggttcctcattttctcccatgtgatggatggaaattctcctgtaaaccggttgcttgagatattcagtacctgcagtggccggtcagatactgatgaattcaactcttgcaggtcccccttgaggcgattgaagctgacatcaaggacgacgatgctgccagaagacatcagctctgctggaaggccaccagatagggagttgtacgacaggttgaggcgcgacaagctggtgagctctcccagcgacggtgcgatttgcccttcaaggcctttagaggtgagacgaatctcaatgacagccccatcttcattgcaggtgatgccctcccacacacagcagttcgtgccattctgccatgacatggagatgccaccgtcttgcgacagctcagcaaggaaccggaggagagaactcttctcctgctcgacgcaagccatggcggaggtggccacgatgagaagcagcagcagtaatgcagcagtagcgaggccagagtacggcatcgctagcctgcttctccacggagaatgtggtgtcatctgcatgaactctctcatcccagcaagtgtttggagttgaatgtggcaatctggcagctaaaatgctcgcgaaaacggcactgtttcaggagcataatgcacatggttgccttgttgacctagcgcgtttgagtctttgcgactggcatatttgagtgtacgtggtagtgatgtgccataccgctggcgctatctatcgactatcacattttgtggcctattgactaaatgagacagctggagtactcatgggccacactgctattctatcacactatttccgtttatttttttattctcgtttcagtttgtatagtagaggtccc
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| CDS seq | atggacctcatctccgccagacccgccgccaccttctccccaaccatgagtgatgggttgggcaaacgggagctgccagcgaagcgagagggcggcgccgcggcgagcagcggaagcctcgaggttagccatgtcttcttccccctcctgatttgcgccgtggccaggaaggggggaaatccccccgaatcgaaacccccgcagccggccgatgaacagctcgcgcaaatcaatcgcgtcgatgtttctctctgtagctgcctcttcgaaggaaggaaaggattgttcaccagtgctggagggattgcacctgtcagatggttgtatgacaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccaatctccatcgggatcgcaccattaaccttggcaagctcacccgtcaacttgtttctcctgaggttgatggttactagatttgtgcaatctcccaatgatgatggcagctctccagataagttgttgctgcaaataatttgggatcttgccactgaatctattccatccaagatcaacaaaaacaagattgatgagctttacgatgagagcatcatcaattgttccttgcaacccattgttagcgaaagagagatcacctgggagaggccctctgatgttgttggcattagccttgagaagtctaagggcagaacatttacctattccaggggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatggcgaattgctgcagaaggaggtaggtcccccttgaggcgattgaagctgacatcaaggacgacgatgctgccagaagacatcagctctgctggaaggccaccagatagggagttgtacgacaggttgaggcgcgacaagctggtgatgccctcccacacacagcagttcgtgccattctgccatgacatggagatgccaccgtcttgcgacagctcagcaaggaaccggaggagagaactcttctcctgctcgacgcaagccatggcggaggtggccacgatgagaagcagcagcagtaatgcagcagtagcgaggccagagtacggcatcgctagcctgcttctccacggagaatgtggtgtcatctgcatgaactctctcatcccagcaagtgtttggagttga
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| Protein seq | MDLISARPAATFSPTMSDGLGKRELPAKREGGAAASSGSLEVSHVFFPLLICAVARKGGNPPESKPPQPADEQLAQINRVDVSLCSCLFEGRKGLFTSAGGIAPVRWLYDRSRTIRFLRLLIDCGISLFRLLKLKLSETSAFNSPISIGIAPLTLASSPVNLFLLRLMVTRFVQSPNDDGSSPDKLLLQIIWDLATESIPSKINKNKIDELYDESIINCSLQPIVSEREITWERPSDVVGISLEKSKGRTFTYSRGDVATELVVPKIKNSKRWRIAAEGGRSPLRRLKLTSRTTMLPEDISSAGRPPDRELYDRLRRDKLVMPSHTQQFVPFCHDMEMPPSCDSSARNRRRELFSCSTQAMAEVATMRSSSSNAAVARPEYGIASLLLHGECGVICMNSLIPASVWS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004650 | OsLima_02g0004650.01 | Chr02 | 3221943 | 3225256 | + | NAM | ||
| CDS seq | atggacctcatctccgccagacccgccgccaccttctccccaaccatgagtgatgggttgggcaaacgggagctgccagcgaagcgagagggcggcgccgcggcgagcagcggaagcctcgaggttagccatgtcttcttccccctcctgatttgcgccgtggccaggaaggggggaaatccccccgaatcgaaacccccgcagccggccgatgaacagctcgcgcaaatcaatcgcgtcgatgtttctctctgtagctgcctcttcgaaggaaggaaaggattgttcaccagtgctggagggattgcacctgtcagatggttgtatgacaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccaatctccatcgggatcgcaccattaaccttggcaagctcacccgtcaacttgtttctcctgaggttgatggttactagatttgtgcaatctcccaatgatgatggcagctctccagataagttgttgctgcaaataatttgggatcttgccactgaatctattccatccaagatcaacaaaaacaagattgatgagctttacgatgagagcatcatcaattgttccttgcaacccattgttagcgaaagagagatcacctgggagaggccctctgatgttgttggcattagccttgagaagtctaagggcagaacatttacctattccaggggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatggcgaattgctgcagaaggaggtaggtcccccttgaggcgattgaagctgacatcaaggacgacgatgctgccagaagacatcagctctgctggaaggccaccagatagggagttgtacgacaggttgaggcgcgacaagctggtgatgccctcccacacacagcagttcgtgccattctgccatgacatggagatgccaccgtcttgcgacagctcagcaaggaaccggaggagagaactcttctcctgctcgacgcaagccatggcggaggtggccacgatgagaagcagcagcagtaatgcagcagtagcgaggccagagtacggcatcgctagcctgcttctccacggagaatgtggtgtcatctgcatgaactctctcatcccagcaagtgtttggagttga
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| Protein seq | MDLISARPAATFSPTMSDGLGKRELPAKREGGAAASSGSLEVSHVFFPLLICAVARKGGNPPESKPPQPADEQLAQINRVDVSLCSCLFEGRKGLFTSAGGIAPVRWLYDRSRTIRFLRLLIDCGISLFRLLKLKLSETSAFNSPISIGIAPLTLASSPVNLFLLRLMVTRFVQSPNDDGSSPDKLLLQIIWDLATESIPSKINKNKIDELYDESIINCSLQPIVSEREITWERPSDVVGISLEKSKGRTFTYSRGDVATELVVPKIKNSKRWRIAAEGGRSPLRRLKLTSRTTMLPEDISSAGRPPDRELYDRLRRDKLVMPSHTQQFVPFCHDMEMPPSCDSSARNRRRELFSCSTQAMAEVATMRSSSSNAAVARPEYGIASLLLHGECGVICMNSLIPASVWS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0156300 | SBH | 0.000000 | 0.000000 | 0.796858 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0156300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004320 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004520 | SBH | 0.000000 | 0.000000 | 0.029732 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004350 | SBH | 0.000000 | 0.000000 | 1.866116 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004260 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004250 | SBH | 0.000000 | 0.000000 | 0.859024 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0051900 | RBH | 0.1436715 | 0.1418955 | 0.3167355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004290 | SBH | 0.000000 | 0.314814 | 0.120547 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0051900 | SBH | 2.271668 | 9.3980925 | 14.4844895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004560 | RBH | 0.130054 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004170 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004450 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004400 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004310 | SBH | 0.151505 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004240 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004190 | SBH | 0.000000 | 0.000000 | 1.364319 |
