Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0004470 | OGI:02002010 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3144408-3146779 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaggccgtgggcgatgctccagaggtaaaccaatgctgcaaagttcttgtgaaagggaaggccaatgatagcagtagctgctcgattgattgattcataccccattgtaccacagatttgggattgtgcctatgtgagatttggttgtgtctaagttgtttgtagctctgtagttctgcgtagatttctgatatttttcactgcagtgttgttggttgcagatttgttgtctcctcgtggcaaattgcgaacaaaaaaaatattgaaatatttagtataaaatatctcgatgaacgttcacattcacattcgcacacaatattgacactaatttcaattcacttcactacttcagttcagattatttacatgtgttcatcgactgttcggccatatcagttctctatttctatcttttggagcagactgaactgactgaatttctctaacagatcacggtctcaccaatcaggtttggctggggtgttcatttttctgtggctggagcggatgtcttggctctgctgaattgagaaacactcaagatcactacacatctgaagatgattatacatatttttttagataatggattaaactggcatctacacccaaaaaggatgtacacagcctgaagatgattatacatatatagagccagcgcacagtgttaactggttcagccaaaatatctggatatgattatctgatcatatagcacacctactccaaataacaaaccaagtgcaactgcaaagacgaccttgtcaatatactgctttgtggagataatggagactggagatgcttctgctgaattgcagtgggtgcaaaagcacagggctgcgtagctttgggttcctataactgtcctataactggcacaggcccttcaaggtcattgtaagaaatgttgaattcagaaaggaagtgaaggtttgccagtgatgaatggattgctcctgtcagatggttgtaagacaggtctaacaccattagattcttgagattgctgaccaatacacatgtagtattcatgcatgcacgatcgtctcggacaaaggcacaattacattagccataatatctggacaagactagctggtcatacaacactccaattccaaagaacacaccaaaggcaattgcggagattgttttgctgctgcattgttgatcttcagagatagttgggatggtgtgagctacctctactgaaccacaaggagccaacatagatccacatagctttggattcccggcaaaactggagcttgagaacgtgttcatctggcctcctgtcggaataggtccttccagatcattgtcagaaatgttgaactttgagagaaagttgagcttgtttagtgcttcaggtattgggccagtgaggtagtttctggacaagtccagcacctgcaagtttgtgagattgcagatagatggtgggatctctccttgtaattggttagagctgaaatcaagatgagtaagagctttcagctcaccaatcttgggtggaatcacactggtaaagctgttagcactaagattcaagagtgcagggaaagatgtgactgcacggtattgtcgcgatagagtggttacatacacaggtagatcaaatagtattgttcgatgagctttgtaatcatctgattttagcatgggtatctctatcaaggtggctggtatttgtcctgtaaggctgttgtttgatacatccaaatagaagaggttgttgaaggagttgagccaactcggcattggcccagtaagttgattgttggataaatctagtacctccaaattttttagctttgatagccaaagaggtatgtttccgatcaatgagcaacgataaattgagagatgtcgaatactctctaaactttcaattgtctcatcttgtggtataacctcaccccagaaattctccccaataaacagggtagtgaggttccgggagctcttgaaagcatggagtgtctttgcaatatcactgaaagagttttcagtaattgacaggaaagaaaggtacttgagatcacctatttttgatgagatctcaccatgaatttggttggacgatagccgcagcgcagtcaaattgttgcatgagtatatgctttctggtattacaccactgaagtcattatgcaggagatccagggctctcagattgtgtagggaagagaagtcaacactgccaaggtctccactgaagctgttcatcttcagatcaatggttgtgagacgtgtgcagtttccgagactcgatggtagatttcctgacatgttgttgttgctcaacctaatcacttccagcttcttgagctgaccaatggactccgggatctcaccatgtaa
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| CDS seq | atgaggccgtgggcgatgctccagaggtattgggccagtgaggtagtttctggacaagtccagcacctgcaagtttgtgagattgcagatagatggtgggatctctccttagctgaaatcaagatgagtaagagctttcagctcaccaatcttgggtggaatcacactggtaaagctgttagcactaagattcaagagtgcagggaaagatgtgactgcacgcttcttgagctgaccaatggactccgggatctcaccatgtaa |
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| Protein seq | MRPWAMLQRYWASEVVSGQVQHLQVCEIADRWWDLSLAEIKMSKSFQLTNLGWNHTGKAVSTKIQECRERCDCTLLELTNGLRDLTM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004470 | OsLima_02g0004470.01 | Chr02 | 3144408 | 3146779 | + | NAM | ||
| CDS seq | atgaggccgtgggcgatgctccagaggtattgggccagtgaggtagtttctggacaagtccagcacctgcaagtttgtgagattgcagatagatggtgggatctctccttagctgaaatcaagatgagtaagagctttcagctcaccaatcttgggtggaatcacactggtaaagctgttagcactaagattcaagagtgcagggaaagatgtgactgcacgcttcttgagctgaccaatggactccgggatctcaccatgtaa
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| Protein seq | MRPWAMLQRYWASEVVSGQVQHLQVCEIADRWWDLSLAEIKMSKSFQLTNLGWNHTGKAVSTKIQECRERCDCTLLELTNGLRDLTM |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004470 | OsLima_02g0004470.02 | Chr02 | 3144408 | 3146599 | + | NAM | ||
| CDS seq | atgaggccgtgggcgatgctccagaggtattgggccagtgaggtagtttctggacaagtccagcacctgcaagtttgtgagattgcagatagatggtgggatctctccttagctgaaatcaagatgagtaagagctttcagctcaccaatcttgggtggaatcacactggtaaagctgttagcactaagattcaagagtgcagggaaagatgtgactgcacggagatccagggctctcagattgtgtag
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| Protein seq | MRPWAMLQRYWASEVVSGQVQHLQVCEIADRWWDLSLAEIKMSKSFQLTNLGWNHTGKAVSTKIQECRERCDCTEIQGSQIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr02 | 3145993 | 3146779 | + | OsLima_02g0004470.02 | OsLima_02g0004470.01,OsLima_02g0004470.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004440 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004310 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004190 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004610 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004130 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004410 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004360 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004280 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004210 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004140 | SBH | 0.0 | 0.0 | 0.000000 |
