Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0003990 | OGI:02009050 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:2820309-2824514 | ||||||||
| Gene Symbol | OsRFP, OsDHSRP1 | ||||||||||
| DNA seq | gccaagccaaaggtggcccatttctcggcttctctctgctcttgctttgcttcgcttctcctcctcttcctcctccttcctcggcggctgctccggctcggattccggtgagccgtcgcgttcgtggtacggcggaggaagcgaggttgcgccctttccgaccgtttcttggctatccgccccgatttgagaaagctgggtgtttcttttttctttctttttttggttcagggatcagagaagttcagaactggtggaggtgctcatatccgcgaggttgatgtctctccctctttccatttcattttggtttagtccaagaacttgtgttgcttgatgctgtgtggtatgtggtggagttgctgcgattttgatgtgtttttggagtgatcggttgttcagttgtcatttggggatttttggaagttttcgggttttgggatcggcgaggaggccgaaatttggagcgttttgtgcgtaattcgttggattgattacgagtgagaggcgattgattctcctttcagtagagagattattttcgtcccaagaatagttttcatggcgttacagttttgtctacgaatttattgcgtgtgtgggttagtgattttacagctataaaatgtgtttattagtggtggttagtcaaaaggtttagagggattattacttgacaagagtatgtggatagacgagtgatgtcagcacataaaccttatcaatgatcatgtcatcatacatggagtgcggtcccaatcctttttttaatctatcttgaaaatgtatttttgtgcactaaggttaattaattaattaattaattaattaattaaatcatggtctttcattggctaaactttgttctttgtagtggtttgtctgagttttaacgacattcgacaatggctgctgtggatagtatacgatggccttaatattcttaaaaaaatatgcgaggtttgttcaggacttaactactcaagtagttaacaattattagtgtttttgttcctttcaataaaaaatatattagggttgtttggcttatcttgaatcagtgttggtcgtcctgttggactttttgtcaggcgactcattttgtagtaaagcatatttgtttcactgctgatgactctaatatgtcaggattactgttgattctagtgtcagtttcaaagcagttaatctgttatctgaataataacatgctcctgtagccaacctgtcaccgtttatgctgattgttcttgcttgctcattcatctcttgtcatcgattctctaggctttgttgaaactgaataaaatttcaatctctgtagtcagtaccacctaatcatatggaggattctccaagtgggagatcaaaagcagctattggatttctcagaagaggtggtggtttctcttcgagaaatcaaagcactgaagagaggaccattcagaactatgatggaccaggaatcaccacaagactcaatccgatgaaaaccaggctgtctgataatcaggagagaccaagatacctacgtgactcattcagatcttcaacctcaatggccattcatggaagctcttccaaagttccgcttaggaaattcggtgacgaaaaacgaaggcaaacgttgttggcaggggtagacattgctgaaagtagcagcagaaatgctgggggcaaacatctggagggtagtaataagagaatcgttgtcgatgataggagttcagatgttctgcatactgaaacagaaggcttggctactgaacaagaccaattgatagcacccaatgctggagtttctgattctgctagttcgtcagatatttctgaacatgcagttgaatccttggtaaggagtgctgctccaagttctagaacccgtagacagaaggacaaagaattgaatttgggtcaatcaggagtttgctcttcgtcatgtactaacaggcctactatatcaagatatgctcctgccgatgtgaagcgaccgtgtaatcatgctagtggagtacaacggcatggtcataacaatctggactgtacttcagtacctaattttctgccatcaggttgctcatatggttctgtttatagcaggaggtttgatgcaatgagaaaaaggacttctgatgggggaagtttttctagatcaaggggcttaagtggaacggctagcttagacgattcacctcctgcataccctgccattgctggtcctagaatcagaacaactacaactgaacgggcttcacaacaaaatgcactaagaagcagaaggaattttcaggattcagcagtgtcagtaaggacaagaagacctccttggggtgctaggttcaggatctctgaggaaagagaggatggcatgatttctcagcgtgattcttccatagggaatcaacagtcagatcaggtgcattcatcttcggaagaggcctctacagagagctcttcaagaccattctctgcagaattacctcatgcaatttactcatctagagtagagggatcaaatgctttcactgcaaggagaagaagatcaagctccctttatgaggaaagacctccacagacattccatgatcttttcagagaaagaaatggccaaagacacatatccatagaaggaattgcagaggtcattttatagcagctccgtttttttctctctttccgaagatagattttatgtaggattacatcactatttttactccacatgcaggtattactagctctggacaggattgaacaagaagcagaactgacttatgaggttagtttctttgcctttgtgtcaaaataattccttgtgattgacttttcacttggaatctggataaattttggcagcaattgatggtgttggagacaaatatattgcttggtgctttcacctcccatgatcagcatagtgacatgcgcatggatatcgacagcatgtcctatgaggtattttttttactatgtttatttggacctggcaaaaactttgttagtttgttcctaaatattttcatataagaagtgcttttaattaagtaaacggtcattcatggctcaacttctagcatgtacttattttagagtaatttcgttccctccttctgaacaggaattattagcattaggagacagaataggctctgttagcaccgctctttctgaggagcaatttgtgaaatgcctcagaagaagtatatatataccagtggctacaaaagcaaacgcgcaagttgtagacgacatcaaatgcagcatatgccaggtatcttgtcatcatctaagcatcaaatgttgtgttgcaccttttttagggagtctactgctactaatgcatatagtgaaagactgaaagtgaaactgaagaccgaatctacgcttccactatcttacattcttatgaaatgaactgttacttcgctcttgccaatttattgaacactatttatgattgattttgcgtcatccctactacttgctgatgattctttttaacatacttgttactacaattaacctacagtgtccacagatgttcagagctcagacaactgttgtatctacttcctctgtttcacattataagatgtttttggtttttgaatagattcatgcatggatccatgtatgtgcttcgtatgtgttcaaatttatatggatgctagtgaatctggacaaggatggagaaaccaaaacgtcttataatatgaaagggatggagtagtactcagttttgtaaaacctgcatctgaaacctccatcacccttccaacaacggcaatcgattctgtgcctgtaaaaaatagccattaaaggattcatcaattggtttgaacataagaaataaaagggattactttggtaaatcgtcacagtaatgggaatatttgtctattccaggaggagtacatagagggtgaagaagttggacggctgggatgtgagcatcagtaccatgtgtgctgcattcaccagtggctcaggcagaagaactggtgtccaatatgcaaagcttcagctgaaccttctactgtgagctaatcccacctgggagattcaagcttgtaaatatttatcatggatttggtgtccatctttttgtggaaactgtaaataatcttgaccttattcactccaatttgtgattatcaaatcagctgtgctctgaaaacaaaaataatccttcaatgtttctcatgg
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| CDS seq | atggaggattctccaagtgggagatcaaaagcagctattggatttctcagaagaggtggtggtttctcttcgagaaatcaaagcactgaagagaggaccattcagaactatgatggaccaggaatcaccacaagactcaatccgatgaaaaccaggctgtctgataatcaggagagaccaagatacctacgtgactcattcagatcttcaacctcaatggccattcatggaagctcttccaaagttccgcttaggaaattcggtgacgaaaaacgaaggcaaacgttgttggcaggggtagacattgctgaaagtagcagcagaaatgctgggggcaaacatctggagggtagtaataagagaatcgttgtcgatgataggagttcagatgttctgcatactgaaacagaaggcttggctactgaacaagaccaattgatagcacccaatgctggagtttctgattctgctagttcgtcagatatttctgaacatgcagttgaatccttggtaaggagtgctgctccaagttctagaacccgtagacagaaggacaaagaattgaatttgggtcaatcaggagtttgctcttcgtcatgtactaacaggcctactatatcaagatatgctcctgccgatgtgaagcgaccgtgtaatcatgctagtggagtacaacggcatggtcataacaatctggactgtacttcagtacctaattttctgccatcaggttgctcatatggttctgtttatagcaggaggtttgatgcaatgagaaaaaggacttctgatgggggaagtttttctagatcaaggggcttaagtggaacggctagcttagacgattcacctcctgcataccctgccattgctggtcctagaatcagaacaactacaactgaacgggcttcacaacaaaatgcactaagaagcagaaggaattttcaggattcagcagtgtcagtaaggacaagaagacctccttggggtgctaggttcaggatctctgaggaaagagaggatggcatgatttctcagcgtgattcttccatagggaatcaacagtcagatcaggtgcattcatcttcggaagaggcctctacagagagctcttcaagaccattctctgcagaattacctcatgcaatttactcatctagagtagagggatcaaatgctttcactgcaaggagaagaagatcaagctccctttatgaggaaagacctccacagacattccatgatcttttcagagaaagaaatggccaaagacacatatccatagaaggaattgcagaggtattactagctctggacaggattgaacaagaagcagaactgacttatgagcaattgatggtgttggagacaaatatattgcttggtgctttcacctcccatgatcagcatagtgacatgcgcatggatatcgacagcatgtcctatgaggaattattagcattaggagacagaataggctctgttagcaccgctctttctgaggagcaatttgtgaaatgcctcagaagaagtatatatataccagtggctacaaaagcaaacgcgcaagttgtagacgacatcaaatgcagcatatgccaggaggagtacatagagggtgaagaagttggacggctgggatgtgagcatcagtaccatgtgtgctgcattcaccagtggctcaggcagaagaactggtgtccaatatgcaaagcttcagctgaaccttctactgtgagctaa
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| Protein seq | MEDSPSGRSKAAIGFLRRGGGFSSRNQSTEERTIQNYDGPGITTRLNPMKTRLSDNQERPRYLRDSFRSSTSMAIHGSSSKVPLRKFGDEKRRQTLLAGVDIAESSSRNAGGKHLEGSNKRIVVDDRSSDVLHTETEGLATEQDQLIAPNAGVSDSASSSDISEHAVESLVRSAAPSSRTRRQKDKELNLGQSGVCSSSCTNRPTISRYAPADVKRPCNHASGVQRHGHNNLDCTSVPNFLPSGCSYGSVYSRRFDAMRKRTSDGGSFSRSRGLSGTASLDDSPPAYPAIAGPRIRTTTTERASQQNALRSRRNFQDSAVSVRTRRPPWGARFRISEEREDGMISQRDSSIGNQQSDQVHSSSEEASTESSSRPFSAELPHAIYSSRVEGSNAFTARRRRSSSLYEERPPQTFHDLFRERNGQRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDSMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPSTVS |
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| Function | E3 ubiquitin-protein ligase MBR2 [UniProtKB/Swiss-Prot:O49500] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0003990 | OsLima_02g0003990.02 | Chr02 | 2820309 | 2824514 | + | NAM | ||
| CDS seq | atggaggattctccaagtgggagatcaaaagcagctattggatttctcagaagaggtggtggtttctcttcgagaaatcaaagcactgaagagaggaccattcagaactatgatggaccaggaatcaccacaagactcaatccgatgaaaaccaggctgtctgataatcaggagagaccaagatacctacgtgactcattcagatcttcaacctcaatggccattcatggaagctcttccaaagttccgcttaggaaattcggtgacgaaaaacgaaggcaaacgttgttggcaggggtagacattgctgaaagtagcagcagaaatgctgggggcaaacatctggagggtagtaataagagaatcgttgtcgatgataggagttcagatgttctgcatactgaaacagaaggcttggctactgaacaagaccaattgatagcacccaatgctggagtttctgattctgctagttcgtcagatatttctgaacatgcagttgaatccttggtaaggagtgctgctccaagttctagaacccgtagacagaaggacaaagaattgaatttgggtcaatcaggagtttgctcttcgtcatgtactaacaggcctactatatcaagatatgctcctgccgatgtgaagcgaccgtgtaatcatgctagtggagtacaacggcatggtcataacaatctggactgtacttcagtacctaattttctgccatcaggttgctcatatggttctgtttatagcaggaggtttgatgcaatgagaaaaaggacttctgatgggggaagtttttctagatcaaggggcttaagtggaacggctagcttagacgattcacctcctgcataccctgccattgctggtcctagaatcagaacaactacaactgaacgggcttcacaacaaaatgcactaagaagcagaaggaattttcaggattcagcagtgtcagtaaggacaagaagacctccttggggtgctaggttcaggatctctgaggaaagagaggatggcatgatttctcagcgtgattcttccatagggaatcaacagtcagatcaggtgcattcatcttcggaagaggcctctacagagagctcttcaagaccattctctgcagaattacctcatgcaatttactcatctagagtagagggatcaaatgctttcactgcaaggagaagaagatcaagctccctttatgaggaaagacctccacagacattccatgatcttttcagagaaagaaatggccaaagacacatatccatagaaggaattgcagaggtattactagctctggacaggattgaacaagaagcagaactgacttatgagcaattgatggtgttggagacaaatatattgcttggtgctttcacctcccatgatcagcatagtgacatgcgcatggatatcgacagcatgtcctatgaggaggagtacatagagggtgaagaagttggacggctgggatgtgagcatcagtaccatgtgtgctgcattcaccagtggctcaggcagaagaactggtgtccaatatgcaaagcttcagctgaaccttctactgtgagctaa
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| Protein seq | MEDSPSGRSKAAIGFLRRGGGFSSRNQSTEERTIQNYDGPGITTRLNPMKTRLSDNQERPRYLRDSFRSSTSMAIHGSSSKVPLRKFGDEKRRQTLLAGVDIAESSSRNAGGKHLEGSNKRIVVDDRSSDVLHTETEGLATEQDQLIAPNAGVSDSASSSDISEHAVESLVRSAAPSSRTRRQKDKELNLGQSGVCSSSCTNRPTISRYAPADVKRPCNHASGVQRHGHNNLDCTSVPNFLPSGCSYGSVYSRRFDAMRKRTSDGGSFSRSRGLSGTASLDDSPPAYPAIAGPRIRTTTTERASQQNALRSRRNFQDSAVSVRTRRPPWGARFRISEEREDGMISQRDSSIGNQQSDQVHSSSEEASTESSSRPFSAELPHAIYSSRVEGSNAFTARRRRSSSLYEERPPQTFHDLFRERNGQRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDSMSYEEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPSTVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0003990 | OsLima_02g0003990.01 | Chr02 | 2820309 | 2824514 | + | NAM | ||
| CDS seq | atggaggattctccaagtgggagatcaaaagcagctattggatttctcagaagaggtggtggtttctcttcgagaaatcaaagcactgaagagaggaccattcagaactatgatggaccaggaatcaccacaagactcaatccgatgaaaaccaggctgtctgataatcaggagagaccaagatacctacgtgactcattcagatcttcaacctcaatggccattcatggaagctcttccaaagttccgcttaggaaattcggtgacgaaaaacgaaggcaaacgttgttggcaggggtagacattgctgaaagtagcagcagaaatgctgggggcaaacatctggagggtagtaataagagaatcgttgtcgatgataggagttcagatgttctgcatactgaaacagaaggcttggctactgaacaagaccaattgatagcacccaatgctggagtttctgattctgctagttcgtcagatatttctgaacatgcagttgaatccttggtaaggagtgctgctccaagttctagaacccgtagacagaaggacaaagaattgaatttgggtcaatcaggagtttgctcttcgtcatgtactaacaggcctactatatcaagatatgctcctgccgatgtgaagcgaccgtgtaatcatgctagtggagtacaacggcatggtcataacaatctggactgtacttcagtacctaattttctgccatcaggttgctcatatggttctgtttatagcaggaggtttgatgcaatgagaaaaaggacttctgatgggggaagtttttctagatcaaggggcttaagtggaacggctagcttagacgattcacctcctgcataccctgccattgctggtcctagaatcagaacaactacaactgaacgggcttcacaacaaaatgcactaagaagcagaaggaattttcaggattcagcagtgtcagtaaggacaagaagacctccttggggtgctaggttcaggatctctgaggaaagagaggatggcatgatttctcagcgtgattcttccatagggaatcaacagtcagatcaggtgcattcatcttcggaagaggcctctacagagagctcttcaagaccattctctgcagaattacctcatgcaatttactcatctagagtagagggatcaaatgctttcactgcaaggagaagaagatcaagctccctttatgaggaaagacctccacagacattccatgatcttttcagagaaagaaatggccaaagacacatatccatagaaggaattgcagaggtattactagctctggacaggattgaacaagaagcagaactgacttatgagcaattgatggtgttggagacaaatatattgcttggtgctttcacctcccatgatcagcatagtgacatgcgcatggatatcgacagcatgtcctatgaggaattattagcattaggagacagaataggctctgttagcaccgctctttctgaggagcaatttgtgaaatgcctcagaagaagtatatatataccagtggctacaaaagcaaacgcgcaagttgtagacgacatcaaatgcagcatatgccaggaggagtacatagagggtgaagaagttggacggctgggatgtgagcatcagtaccatgtgtgctgcattcaccagtggctcaggcagaagaactggtgtccaatatgcaaagcttcagctgaaccttctactgtgagctaa
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| Protein seq | MEDSPSGRSKAAIGFLRRGGGFSSRNQSTEERTIQNYDGPGITTRLNPMKTRLSDNQERPRYLRDSFRSSTSMAIHGSSSKVPLRKFGDEKRRQTLLAGVDIAESSSRNAGGKHLEGSNKRIVVDDRSSDVLHTETEGLATEQDQLIAPNAGVSDSASSSDISEHAVESLVRSAAPSSRTRRQKDKELNLGQSGVCSSSCTNRPTISRYAPADVKRPCNHASGVQRHGHNNLDCTSVPNFLPSGCSYGSVYSRRFDAMRKRTSDGGSFSRSRGLSGTASLDDSPPAYPAIAGPRIRTTTTERASQQNALRSRRNFQDSAVSVRTRRPPWGARFRISEEREDGMISQRDSSIGNQQSDQVHSSSEEASTESSSRPFSAELPHAIYSSRVEGSNAFTARRRRSSSLYEERPPQTFHDLFRERNGQRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDSMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPSTVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr02 | 2823263 | 2824215 | + | OsLima_02g0003990.01 | OsLima_02g0003990.02,OsLima_02g0003990.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.056588 | 0.428110 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0150700 | RBH | 1.112342 | 0.061224 | 5.316881 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05692 | RBH | 0.679572 | 0.039258 | 0.993081 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0150700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003920 | RBH | 0.688317 | 30.845034 | 4.514866 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004010 | RBH | 0.203452 | 5.387379 | 2.829411 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003950 | RBH | 1.501412 | 43.395824 | 6.195849 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003780 | RBH | 0.066882 | 0.414895 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003930 | RBH | 1.846001 | 27.925362 | 11.294216 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0047700 | RBH | 14.072448 | 15.0631305 | 4.7432075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003850 | RBH | 0.000000 | 1.567307 | 0.699065 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0146300 | SBH | 0.0785955 | 1.68102 | 0.01365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027510 | RBH | 0.163598 | 0.376956 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003800 | RBH | 0.468816 | 12.892250 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004060 | RBH | 2.134815 | 30.305332 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004030 | RBH | 0.548931 | 2.250375 | 2.165818 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003830 | RBH | 0.110034 | 11.743445 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003870 | RBH | 0.326660 | 1.855381 | 2.281569 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003810 | RBH | 0.563480 | 47.777477 | 5.389936 |
