Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0003880 | OGI:02008880 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:2746809-2752415 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgaaaccctaggctgcttcgcttcctcctcctcctcctccgctccaatggcggacgtgctcctcccggagctccgctctcctcctcctccgccgccgccgctgccaccgacaaatgatgatcgcgcgcgggcggtggacctgccatcgccgactccggagtgtgacgatcgctcgccgcgtcgtgagctggggcgctcgccggaggatcacggcgtgccgctccctcccccgccaccgctcggctcctcgcgccccgagcgcctcgccagcgatcgtccggaggagggcgcctccgccgccgcgcagccgtgtggcggaaggagtgagagccccacggcgaggtccatgtggccgcggaggctctcccctgcgtcgttgccgccgcgtggcgggaggaggagcgagagccccacgccgaggtccatctggcggcggctctccccgtccccgcccccgccgctgccgcccttgcctcccaagcggccgcgcttggacggccgccgtagcccaccgcgcggtgggaggtgaggcggagggaggacgttttggtttaccttctcggctctcgtcggtgtttgatttctcctgcgaagatctcaagctaatgtgtgttccgctcgcgcgtgtttcgtgcagattcggattcgagcacgagcgaggcagggaaaggagcatgaacacttcgcgtcgcgctccaggtgagctatacttgttgaacattttcatcctgccccttctgggcgcaggcatttccaaccaaaatcgtgccctgctacaagtttgcatagcatttctcaaagcagagtttctggttgttactttgggattgggaagggatttctcgagcacttagacagatggaaactgatcagtatggtttgaggtctccttcatcctggattcctggtagctcaaaatctctgggcttgcttggaggccaatgtgagaattttttttctcattccatcaaaacaaatatactctgtgtacttcagtagttctcatggtgaaatggtgagtgtaattcgtcagttagtgctttggcacgcttttcgagaacgaggagcctgggacattaagcacttactaggtgtcttgtactcttgtgtgatttcataatactcacctcggctgtcaactcaatgctatcagaattgcagcatgcatctttgtattagtgaaaaatttctgatgtcctcagttttaaaaaagaactatgccatcaatcaacactaattttattggcacactagtaggtgattatcttgttgagttacctatacactttgataaataggagttggcttcaatacttgtaaatttacttgagaacaagagagctagtggattgctatcaacatcgtgcatgtttcttgttggcttacctctagtcacaattgaagttcttagtatgaagcattttgacatcgatctattatttatgattaacctacttctgcagtattagataaaaagttaacattaatactctctctctctccccctctcttcattagtaaaccttattggttatgtgcatgaggacataggccggagatataaacaatttcaatgatctaataataattcatggtccttcatgtgagtatgtcttgtaagaacgacgattcactgctagaagtcttaacacttactgcttttcttctagattgcctggattctggatgtgatgccccctataatggtcaaagtaacacccggaggtatgtatatgattgccctatcatggtggtagttttgatctgttaggtatgttgatattgctattacttccaagtaatttgctagtgtggtgttgcattttgttgaacttttccttcctttttgtctttttttccgttttaaatccctcatatattgttgagtggatggagtgccaattgtatgagatcttatgtgattccaaatcatttcaggaaaggattgatgacatacaaacagtttacccaaaaacttgaagatgatgtttcaccgggtgaagctgagagcaggtatttattaacaaaaagttacacaacattccagaacttgaattaatctgttgtactagattgcacttaaagttcagtgagctatttgtctaagtacactgttatcaacttggttaacaaggtaccaagaatacaagacatcatacattacttctcagaaacaggattattttgatcaccataagaatgaagatcggtatgttcaaaatgcacttcctttccttctggtggtgttaattgtactttgttaagtaaattggtattgcaggttcatttctttgtttttgtaattgcagtttgaaagacatgtaccacccaacaaacttattatctgttattgaaaggtaataataagtttgcttaaagcttcactcagaagtttacctgctgtcagaaatttcgtatttgaattcgtattgagcagcattcataaaccgaacagcgcttttttatgtgcgctattcatttcgctcagaaaaggttgtgttgcttgttggtttcttatgtctgtttttatttcactcaggcggaatgaactttgcaaggctgcagcgaagaatttgattcttgatttgcggagtggaactttggacctgtgagatgaatctatgtatcatttatgttgtgaatgattaatcctatggtatttcaagttggttttgctgatatcttgattttcattggcatagtggtcctggaatgactgctggtacagaaagtaaatcaggaaatgacagtgatggaatccctgcagatgatgaagattatcacaacaagagaagaaggcatcacagaggtcccctggaagaaactgaactagtttcagttgctcctaaagctcacccagtcagttcgcattatcgacgaattcaaactgacatacatcaaactctagccttagtgaagaagcttgatgaagagaagggtattgtgggaaacatcctgacaactggtgatcacacaaagtcaaatggtgacaaatcatatgctggatctacagggcctttagttattgtccggggcttatcaactgttaagggccttgatggttttgagctcctagacactctccttacttatttgtggcatgtccatggtattgattactatgggatgtctgagagtacaaatgcaaaaggtcttcgtcatgtgagagctgatacgaagaatgccaacatggacaaaagcagcgctgctgattgggagaagaaactggattatttctggcaagagagactgacaaacggcaaggatcctctagttgcattgactgccaaggataaaattgatgcatcagctgataaagttctagaatcttatgtcacaaaggttaaggatgataactacggatggacatacggctgtggagccaaaggatgtataaaagttttccatgctcctgactttgttctcaaacatctgaacctcaagcatcctgatttggtctccaaattgacttcaagagtccaagaggatatctatttccaaaattatatgaagtatgtatttagatctccaaatgcaaatgacaaattgttatttccgacatgtcaaaaggtaatgcttctgttgttgtttacttttgatgcagtgatccaaatgctccaggtggcacaccagttatgcagcaacaatcaccagtaagaaactatacactgtttagcttgttccttttcactgatatgcttaagaacattcccttcttgtttgtatggtggggtgagaaaagctataatactattcttaattaactctgaaactaaactaatttatctgaactgtttctcggtcttagaaggtttacattgcaccgattgttaatttcttccgcaatttccccctttgagatgcttattttcattttttagttgtttgtgcttatcataaaaacagtttgtttctttaggagtttgtgaaatgtttttccatgtcccatgtttgactaacagatcaatagaaattcaatccataatttgttgtgttcacctgtcactagtgaagctctatgttgtagatctttcaccttatttccacattaatgagtaatcgatgacaatattttacttcttgtaatatttatgtatgtgaagtctctgatgtttgatactgttcgttcttcatcataatccatgtaacttctctagtgttgaatgttcttaattttgcatttcaagtatatttgctgggggatattaaacgtgcagtgtatcacttgaaacttgaaagtgttgtgtattagttattgaaatcctaaacctgcagtataatccttatttataagcccgttctggtttgcaggagcagcaaggacctacaccttctgaactaacgcctggtgcttttggcgggcagggttccttcgttgaaatgcccactccaccagtactaatacctgtgcctggtgctgggtaggttaattatgttatgccagttagctaaacaattaagtactctacaaaaaggaaaaacaagtcagttatcaagtccaggcacaattctaactatggttgtcttggtttcagtccattgggtccatttgttcctgcacctccagaggtagtcatgcagatgatgcgaccagtgatgcccatgtatccgcctcgtccgcctaaccctcgtcgtctgcgaaggtcagtactgatcaactaaagtttgattaatttccccctaaagaacactaagcttaatactttgataaaaaaaaattgccgggtccgcggaaggacgccgacctactttgataaaatttggtatacgttaggaaatgaaaatccgttaacaacaacatggttagtttttgcactttcgaaatgatttgctaaatacgatcccaatgactatgcaatgctccttcctctcttgtccttgcctgtttctgcactggtttactgccctactatactttctactttgtgccagcttctcttgtgatcttgtcctattgcatttgattgtggaagcagaaaacatgatacacctttgtgtcgaacatatggatatgcttcgctgtagtttctgttgcctaactctctaaaatttaaattcatgatgttggatgcagctacaaagatcttgacgctcctgatgatgaagtcactctcgtggactacagaagtttgtagatgcgcgtttcgtgttaaccagcagccagcaggctaattcggtgatggttcctccagacagcgtaaaatttttctaacaactgatatgaaagcacgattacttcccgttgctgccacaatgaggagacggacgacggataggaaattttcgtcacgtctgacacttaagatgcgtgtcgcttgaacgatcaaccattctatcatacatacattgatctgcccctgtgttttctgatacttgaatgggcaacagaagttacgggattaacatgatctaatttgccactgtacatgtttgctgcaggatgatggaaaactagttattcttccctcttcttagacatgttcttttggatgcactccgtttaacaccctatatgaagcgagaaagacctctttcttcttttttttcctattaactatatatctgtctggtggataatggtttgcttaacacagaccgcgttacaat
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| CDS seq | atggcggacgtgctcctcccggagctccgctctcctcctcctccgccgccgccgctgccaccgacaaatgatgatcgcgcgcgggcggtggacctgccatcgccgactccggagtgtgacgatcgctcgccgcgtcgtgagctggggcgctcgccggaggatcacggcgtgccgctccctcccccgccaccgctcggctcctcgcgccccgagcgcctcgccagcgatcgtccggaggagggcgcctccgccgccgcgcagccgtgtggcggaaggagtgagagccccacggcgaggtccatgtggccgcggaggctctcccctgcgtcgttgccgccgcgtggcgggaggaggagcgagagccccacgccgaggtccatctggcggcggctctccccgtccccgcccccgccgctgccgcccttgcctcccaagcggccgcgcttggacggccgccgtagcccaccgcgcggtgggagattcggattcgagcacgagcgaggcagggaaaggagcatgaacacttcgcgtcgcgctccagattgcctggattctggatgtgatgccccctataatggtcaaagtaacacccggaggaaaggattgatgacatacaaacagtttacccaaaaacttgaagatgatgtttcaccgggtgaagctgagagcaggtaccaagaatacaagacatcatacattacttctcagaaacaggattattttgatcaccataagaatgaagatcgtttgaaagacatgtaccacccaacaaacttattatctgttattgaaagtaaatcaggaaatgacagtgatggaatccctgcagatgatgaagattatcacaacaagagaagaaggcatcacagaggtcccctggaagaaactgaactagtttcagttgctcctaaagctcacccagtcagttcgcattatcgacgaattcaaactgacatacatcaaactctagccttagtgaagaagcttgatgaagagaagggtattgtgggaaacatcctgacaactggtgatcacacaaagtcaaatggtgacaaatcatatgctggatctacagggcctttagttattgtccggggcttatcaactgttaagggccttgatggttttgagctcctagacactctccttacttatttgtggcatgtccatggtattgattactatgggatgtctgagagtacaaatgcaaaaggtcttcgtcatgtgagagctgatacgaagaatgccaacatggacaaaagcagcgctgctgattgggagaagaaactggattatttctggcaagagagactgacaaacggcaaggatcctctagttgcattgactgccaaggataaaattgatgcatcagctgataaagttctagaatcttatgtcacaaaggttaaggatgataactacggatggacatacggctgtggagccaaaggatgtataaaagttttccatgctcctgactttgttctcaaacatctgaacctcaagcatcctgatttggtctccaaattgacttcaagagtccaagaggatatctatttccaaaattatatgaatgatccaaatgctccaggtggcacaccagttatgcagcaacaatcaccagagcagcaaggacctacaccttctgaactaacgcctggtgcttttggcgggcagggttccttcgttgaaatgcccactccaccagtactaatacctgtgcctggtgctggtccattgggtccatttgttcctgcacctccagaggtagtcatgcagatgatgcgaccagtgatgcccatgtatccgcctcgtccgcctaaccctcgtcgtctgcgaagctacaaagatcttgacgctcctgatgatgaagtcactctcgtggactacagaagtttgtag
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| Protein seq | MADVLLPELRSPPPPPPPLPPTNDDRARAVDLPSPTPECDDRSPRRELGRSPEDHGVPLPPPPPLGSSRPERLASDRPEEGASAAAQPCGGRSESPTARSMWPRRLSPASLPPRGGRRSESPTPRSIWRRLSPSPPPPLPPLPPKRPRLDGRRSPPRGGRFGFEHERGRERSMNTSRRAPDCLDSGCDAPYNGQSNTRRKGLMTYKQFTQKLEDDVSPGEAESRYQEYKTSYITSQKQDYFDHHKNEDRLKDMYHPTNLLSVIESKSGNDSDGIPADDEDYHNKRRRHHRGPLEETELVSVAPKAHPVSSHYRRIQTDIHQTLALVKKLDEEKGIVGNILTTGDHTKSNGDKSYAGSTGPLVIVRGLSTVKGLDGFELLDTLLTYLWHVHGIDYYGMSESTNAKGLRHVRADTKNANMDKSSAADWEKKLDYFWQERLTNGKDPLVALTAKDKIDASADKVLESYVTKVKDDNYGWTYGCGAKGCIKVFHAPDFVLKHLNLKHPDLVSKLTSRVQEDIYFQNYMNDPNAPGGTPVMQQQSPEQQGPTPSELTPGAFGGQGSFVEMPTPPVLIPVPGAGPLGPFVPAPPEVVMQMMRPVMPMYPPRPPNPRRLRSYKDLDAPDDEVTLVDYRSL |
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| Function | Serrate RNA effector molecule [UniProtKB/Swiss-Prot:Q9ZVD0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0003880 | OsLima_02g0003880.01 | Chr02 | 2746809 | 2752415 | + | NAM | ||
| CDS seq | atggcggacgtgctcctcccggagctccgctctcctcctcctccgccgccgccgctgccaccgacaaatgatgatcgcgcgcgggcggtggacctgccatcgccgactccggagtgtgacgatcgctcgccgcgtcgtgagctggggcgctcgccggaggatcacggcgtgccgctccctcccccgccaccgctcggctcctcgcgccccgagcgcctcgccagcgatcgtccggaggagggcgcctccgccgccgcgcagccgtgtggcggaaggagtgagagccccacggcgaggtccatgtggccgcggaggctctcccctgcgtcgttgccgccgcgtggcgggaggaggagcgagagccccacgccgaggtccatctggcggcggctctccccgtccccgcccccgccgctgccgcccttgcctcccaagcggccgcgcttggacggccgccgtagcccaccgcgcggtgggagattcggattcgagcacgagcgaggcagggaaaggagcatgaacacttcgcgtcgcgctccagattgcctggattctggatgtgatgccccctataatggtcaaagtaacacccggaggaaaggattgatgacatacaaacagtttacccaaaaacttgaagatgatgtttcaccgggtgaagctgagagcaggtaccaagaatacaagacatcatacattacttctcagaaacaggattattttgatcaccataagaatgaagatcgtttgaaagacatgtaccacccaacaaacttattatctgttattgaaagtaaatcaggaaatgacagtgatggaatccctgcagatgatgaagattatcacaacaagagaagaaggcatcacagaggtcccctggaagaaactgaactagtttcagttgctcctaaagctcacccagtcagttcgcattatcgacgaattcaaactgacatacatcaaactctagccttagtgaagaagcttgatgaagagaagggtattgtgggaaacatcctgacaactggtgatcacacaaagtcaaatggtgacaaatcatatgctggatctacagggcctttagttattgtccggggcttatcaactgttaagggccttgatggttttgagctcctagacactctccttacttatttgtggcatgtccatggtattgattactatgggatgtctgagagtacaaatgcaaaaggtcttcgtcatgtgagagctgatacgaagaatgccaacatggacaaaagcagcgctgctgattgggagaagaaactggattatttctggcaagagagactgacaaacggcaaggatcctctagttgcattgactgccaaggataaaattgatgcatcagctgataaagttctagaatcttatgtcacaaaggttaaggatgataactacggatggacatacggctgtggagccaaaggatgtataaaagttttccatgctcctgactttgttctcaaacatctgaacctcaagcatcctgatttggtctccaaattgacttcaagagtccaagaggatatctatttccaaaattatatgaatgatccaaatgctccaggtggcacaccagttatgcagcaacaatcaccagagcagcaaggacctacaccttctgaactaacgcctggtgcttttggcgggcagggttccttcgttgaaatgcccactccaccagtactaatacctgtgcctggtgctggtccattgggtccatttgttcctgcacctccagaggtagtcatgcagatgatgcgaccagtgatgcccatgtatccgcctcgtccgcctaaccctcgtcgtctgcgaagctacaaagatcttgacgctcctgatgatgaagtcactctcgtggactacagaagtttgtag
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| Protein seq | MADVLLPELRSPPPPPPPLPPTNDDRARAVDLPSPTPECDDRSPRRELGRSPEDHGVPLPPPPPLGSSRPERLASDRPEEGASAAAQPCGGRSESPTARSMWPRRLSPASLPPRGGRRSESPTPRSIWRRLSPSPPPPLPPLPPKRPRLDGRRSPPRGGRFGFEHERGRERSMNTSRRAPDCLDSGCDAPYNGQSNTRRKGLMTYKQFTQKLEDDVSPGEAESRYQEYKTSYITSQKQDYFDHHKNEDRLKDMYHPTNLLSVIESKSGNDSDGIPADDEDYHNKRRRHHRGPLEETELVSVAPKAHPVSSHYRRIQTDIHQTLALVKKLDEEKGIVGNILTTGDHTKSNGDKSYAGSTGPLVIVRGLSTVKGLDGFELLDTLLTYLWHVHGIDYYGMSESTNAKGLRHVRADTKNANMDKSSAADWEKKLDYFWQERLTNGKDPLVALTAKDKIDASADKVLESYVTKVKDDNYGWTYGCGAKGCIKVFHAPDFVLKHLNLKHPDLVSKLTSRVQEDIYFQNYMNDPNAPGGTPVMQQQSPEQQGPTPSELTPGAFGGQGSFVEMPTPPVLIPVPGAGPLGPFVPAPPEVVMQMMRPVMPMYPPRPPNPRRLRSYKDLDAPDDEVTLVDYRSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0149600 | RBH | 0.000000 | 0.100593 | 0.956584 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05610 | RBH | 0.000000 | 0.066851 | 0.337827 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0149600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003820 | RBH | 0.0 | 0.0 | 0.258545 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003910 | RBH | 0.052668 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003850 | RBH | 0.0 | 0.0 | 1.897294 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003680 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003830 | RBH | 0.0 | 0.0 | 0.695708 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0046400 | RBH | 0.067563 | 0.3815645 | 2.8141945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003760 | RBH | 0.039686 | 0.0 | 0.200198 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0048800 | RBH | 0.0606415 | 0.2530185 | 4.8680315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027790 | RBH | 0.288354 | 0.311568 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003690 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0003960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0003920 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003770 | RBH | 0.0 | 0.0 | 0.293259 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003710 | SBH | 0.0 | 0.0 | 1.218728 |
