Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0002950 | OGI:02006810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:2041304-2044037 | ||||||||
| Gene Symbol | RGG2, OsRGG2 | ||||||||||
| DNA seq | tcgctatgaaatgaaatgaaaccaccaccaccaacgacttcctcctccacccgcttcgtcttcgtcttcttcctcctccacctccacttgatcccagcatccgcatccgcagctgcagcagcagcggcgaggtggaggtagctagatccgtgggaggtggtggttgtggtggtgagggggagatgaggggggaggcgaacggggaggaggagcagcagccgccgcggcggaatcatctgcgggacgacgcggaggaggaggaggaggtggagcggagggcggcgaggccggtttccggtcagcagcagcagcagcggcggcggcgaccgacggatgtggggggaggggcggcgatgaggagcgtggggtacgtcgggaagcaccgcctctccgccgccatcgcccgcctcgaccaggagctccagtcgctgcaggtcagcgccacccccctccctcctcttcctctcatctcccatgaacttgattctccgtgtgcttattgcttatcaagcactagtatgtgtgcctttactgtctctgtgctgtggcctgtggatgtgtagcgagtcagcagttcaagctgtggcgcgatctagatcttgagaaaatccagaaaccgaagttttttttttccgttctatcaatgccttcttggcttcttctgttgcgtatgcatgtactgatgtatgtgtacaatcagtacatgcaaagggaaacaaaagagttcttcctttatccacagcttttgttcttacattgaaaaattatgaaagcgttgaaccaaatcacccagactactagacttatagtgctttaaaattaggagtttgtcctaatttgttttttttacattttgtccatgaaacatgtccaccattgcccatattaagccacataatctgcctacttttgtttaagcgggttgcgagtttgagagctttcagggggtattgacaagaacacaagtaacaggattctggtggtctcaatgcatatatagatgtctcctactggacagcttgagctgtgctgaaaatatgattctgcacaactttctgaagtgcagcaagtgttacgcataatgttccaccccctcagtgatttagatcctaaagcagcaccagtggacaagttgaggtacttgcatcccttgtcttcacttgctcttctggcctgtgaccctcagaaacacacatatgttgcttgcctctatatggtagctttctagagcttgttagtgaaacatttgatgggaactgttgactgaggcttataatttgaatggttgaatttgatgaatctactccattacaagtatttgttattttccactatgttctctgattttcagcttctctctcctaggaggaccttgtttttctcctaggggggtaggggatccacagtagtcttctattctcttgggtttaattctctgtattttttctaagttagtggaaaacaagctatgcgcagagagaactacatacattggcaagaagaaaattcagtttcccttaatattctgcatcgtagacaggttggatagattattgtgcaatgcaagattcttcaagaatctctccaggctgcattcgtattaaaggttggtgtgcttagcgtaatcctgatagtataaccacctctataaaatcctattcggtccttctggtgctaggccctggaattggtaattaaagtcctggatttagtaatcggaatgaatatgtgctattactcaccagattacgtgtaattatttgtgagcacaatcagttcaactattcttctcatttctgttcgcaaaaacatcttgtttcatcatatcagttgaaactatacagtgagaaattcacttacattttctactggtattttgtttttacttagccacgtttattagaaatattaggctaaaaatcctaactaactcatcgagaggacttttcttatgatttcatttggtttattgtcgccatgctttagttttttttatttatttattgtgatgtatagtatatgtgcatttgacacaggatgaactgaacgagcttgaaaccatggaaccggcatctgctgcatgccaagggtaagtaaattctgagtgtagcatttgttttcccttgtacctaacgtttctctgttttgtgattcttttgtcctcttgatcatgccagagtgatcacaagtacagagggaaaatccgacccgcttcttcctgtgtaagtcgcgatgtttagctactcattctagtacctcaccctgcaagatctgaagatcgtactgcataaggacttgtgtaaccatgatctttctcatctttacagcaccattggtccagagaacgcttcttgggagagatggtttcagcgcgtgcgtagctctcgcagtaacaaatggtgggcatccaaaggctcagatttttcctagccccctcctgcaaagatgagactaccagctttgtgcagattaaaatcacctgaactgtatcatccacggatggcttggcagccaacaagaacacaacgtcgcttgccgccttgcgggctgtctagttcttctcaggacacgcaatagtttttggagagaattgctattgttgttaatgtatgtaatccctaacacgaacatggacgaatgtaccgacattatcttccagagctcttgattagctctgcttgattgattctaatgctttcctgcaatgccatgcaaaacattcagattgcgatgc
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| CDS seq | atgaggggggaggcgaacggggaggaggagcagcagccgccgcggcggaatcatctgcgggacgacgcggaggaggaggaggaggtggagcggagggcggcgaggccggtttccggtcagcagcagcagcagcggcggcggcgaccgacggatgtggggggaggggcggcgatgaggagcgtggggtacgtcgggaagcaccgcctctccgccgccatcgcccgcctcgaccaggagctccagtcgctgcaggatgaactgaacgagcttgaaaccatggaaccggcatctgctgcatgccaaggagtgatcacaagtacagagggaaaatccgacccgcttcttcctgtcaccattggtccagagaacgcttcttgggagagatggtttcagcgcgtgcgtagctctcgcagtaacaaatggtgggcatccaaaggctcagatttttcctag
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| Protein seq | MRGEANGEEEQQPPRRNHLRDDAEEEEEVERRAARPVSGQQQQQRRRRPTDVGGGAAMRSVGYVGKHRLSAAIARLDQELQSLQDELNELETMEPASAACQGVITSTEGKSDPLLPVTIGPENASWERWFQRVRSSRSNKWWASKGSDFS |
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| Function | Guanine nucleotide-binding protein subunit gamma 2 [UniProtKB/Swiss-Prot:Q6YXX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0002950 | OsLima_02g0002950.01 | Chr02 | 2041304 | 2044037 | + | NAM | ||
| CDS seq | atgaggggggaggcgaacggggaggaggagcagcagccgccgcggcggaatcatctgcgggacgacgcggaggaggaggaggaggtggagcggagggcggcgaggccggtttccggtcagcagcagcagcagcggcggcggcgaccgacggatgtggggggaggggcggcgatgaggagcgtggggtacgtcgggaagcaccgcctctccgccgccatcgcccgcctcgaccaggagctccagtcgctgcaggatgaactgaacgagcttgaaaccatggaaccggcatctgctgcatgccaaggagtgatcacaagtacagagggaaaatccgacccgcttcttcctgtcaccattggtccagagaacgcttcttgggagagatggtttcagcgcgtgcgtagctctcgcagtaacaaatggtgggcatccaaaggctcagatttttcctag
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| Protein seq | MRGEANGEEEQQPPRRNHLRDDAEEEEEVERRAARPVSGQQQQQRRRRPTDVGGGAAMRSVGYVGKHRLSAAIARLDQELQSLQDELNELETMEPASAACQGVITSTEGKSDPLLPVTIGPENASWERWFQRVRSSRSNKWWASKGSDFS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.190183 | 0.296940 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0137800 | RBH | 0.430840 | 3.259285 | 1.887101 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04520 | RBH | 0.291127 | 2.082036 | 0.236197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0137800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002950 | RBH | 0.569421 | 19.509071 | 2.021832 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003030 | RBH | 0.600246 | 3.435802 | 1.522820 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002970 | RBH | 0.886614 | 22.469313 | 5.395721 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002940 | RBH | 0.073180 | 0.690379 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002970 | RBH | 5.579517 | 9.232882 | 13.611374 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0033900 | RBH | 5.36511 | 11.7814005 | 7.380106 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002880 | RBH | 0.000000 | 1.785975 | 0.730272 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0035000 | RBH | 10.231002 | 13.3900085 | 13.7162245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002880 | RBH | 0.867693 | 20.294514 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002950 | RBH | 3.754840 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0003040 | RBH | 0.460353 | 2.103756 | 0.459959 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003000 | RBH | 0.373045 | 8.596448 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G002980 | RBH | 0.902848 | 3.239949 | 2.075917 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002930 | RBH | 0.000000 | 0.000000 | 0.322473 |
