Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0000860 | OGI:02002750 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:565085-571812 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggtaaaattcgtcaatttggattctcaatagcgtttagtatggatttgatttttttcgttaatttgtctgtctgtacagcagcagcagcagcagcagcattacattacatgcatgcaactaatttggtagcctatctagctaattgaagaagatggccggctccagccgtggctccgtcaagtccaccaccgtctcctcctccatctccggcgatcgccaactctctccgacgctgcacttcacggctaacctagtgctgtgcatcgtgtcgccggcgctgctgcttctcccgatgcgggtgaccaaggtggcggcggcggcgtgcttgcgggaggaaggagcgatggtggcgaggatctggacgacctcgctcatggtgggacgcgactcgggctcccactgcaggcactcccgcgccaggtgcgccatgatctgcatctcctcctgcgggaaccgcccctgcagcgccgggtccggcagctccgccaccaccagccggctgtcgcgcagccgcggcgccgcccacaggaccaggctctcccccgccgccgccggcgggcggtggtggtggatcggctgccgccccgtgatgagctccaggatgaccacgccgaagctgaacacgtccgacttgagcgacgccttccccacgatggcgtactccggcgcgaagtacccgaacgtgcccagcatccgcgccggcgagctcgagcagctcgtcacgccgtcgttcatcaggcacttggccatgccaaggtcggtgatcttcgccctgaacttgtcgtcgagcaggatgttggtggacttgatgtcgcggtggaggatccgcggcgccgccgcctcgtgcaggtactccacccccctcgccgcgccgagcgccacgccgacgcgcgtcgcccagtccatggccttcctcccctgcttgaggtcgaggcagtcgcgcaggttgccattgcccatgcactcgaacaccagcagccgctccagctgccggccctggctctccatgcagtaacccagcaatggcacgacatggcagtggttcagccgagacagcagctcaacctgttcgaccaaatgcaaatcgaacttcagattgccgccactgcaaatgcaagcaaattggatgttcttgggatttgtcaatgagatggtactacctcggataggaactcgaagtcttcgtctgcgcctccgaggggcctgagcttcttcacggcaatgaccttggcgtcgctaagctgtccacggtacaccttgcttgttcctccaactccgatcagatgttcatctgaaaatttcccggttgcttgctccaattccgagtaggagaacctgacgatgacaccgggaagcggaccaccttcattgccacatattggattgcagctgcacagaaactctgcgacagagaattgaaaaacaagcaaggatcagtgtgctgctctgagtctgaatacactgtcctgaatcaaacaggctctgaatattggagcagattcagacaggcacaacatctaagaaagaaaattcagagatacatgctttgccttgacttacctttaagtacactgatccttggttttggctttggttggggaagaggagaagatcgatgactgacgaggtttgatctgctgctccagctggtgtacttatcaaaggagtatgcatgcgaatgtggagagagcgcatccttgcgacgcaggtagtacgccgtggtgccaaggaatgcaatagtggtgaggatcacacatactagcagtgtaactatcactgttttgttagagacgtgcttctttccttcctgagaaattcctggacagcatatgcacataaacattcagacattcagtaagcacaaagttcatctgaacactcagtccacaatataatttatgtatctgaattgtaataccggatgtgcagttacaggaagtgaagcagcccctatcatgtactgcagtgtgttcttttttaagggctttgtcagaagcacatgtgcagttccatgatcctgtgccaccatcatcatctgctgcagagatatccgactaaggcgcaatgcaattgtggactgttcatagagtacatgatcaattgttcataccttgtagacaatggcaggaagaagaacaattcgacgacaagctgctatttgagtttggttcacctagtggatgagctgtgcatacacatgtccagcttgttgttccaactccctctgcagtgccatctgtgcaataacaagtgtacacatcttatatctcataactaccccttccagttcataagcatcagcatgcaacaaattaaaaagataaataaattttgttccatgagaaagtggtgcttaccactcgatgctacttggatcagaagtacacagctgagggaggccaggagaagtttcttgtgtacatccatcagctggagaatggggaaaaaccatcagattgaccccatctgattgctatgctctgaaaaatgacaaaggcatgtttgaatacatcatttgtttgactgaaatcgaagacaaaattgcctcgatacatgcatagcactaagaacaattccagatgcatattaatattgttagatggtacatggttgactggctattactatcaaattataccactacacatccagaggaacatataaaacacaaaagaattaatatgaacaaaaataaggtttacttcttataaaataatgcattactagacagaggtgcaaaccattattaccaattaaaaatacctattaaatgccaagctatgattaataagtagcaacttgaaggaaaatggaggcctcagaggtttacttacaactgacttgacttgttaacgctaatcaaatccagacgaagcgtacgacacagacatgatctctctaaaggttcacaagaaaggctgtgtttagtttacatcaaaattggaagtttggttgaaattggaatgatgtgacggaaaagttggaagtttgtgtgtatagataagttttgatgtgacggaaaatttggaagtttgaagaaaaactttggaactaaacacggccaaagaaaccagccaaatgtacaagaaaggactaatttgagtttcttcaaactgtgtcctggtccaggagtagaacacgagagagcaaacagggaaggcagggagagagcgagagatgaagttctaacttgagagttcagactaaagtctggactaacaaagaaggctgcttatatgcaggcaaggcattccaagaaagagacagaatctatcaacaatagtttttcaaatgtgtgcttccaaaaaaatggaatttttcaatcatagcattattataacacattcactgcagcaccttccaagacaggagacatctcaacctacagcaccactatgcacagtaggaaaaagaagaagtaacaggcctggaacgagcaaaacagcagccatctttttccatgctacaaagactcgagattgcctgaacttaggtgtggtgtttgaatagagagattcatttcaaactatggattaaaacttgaaatgacatctgacctaagatctcgaatgtgatggagggcaagtctggcggtgatcggtgatcaggagcctgaaagccacctgggcaaagaagattgttgggcattcagcacaaaaaacacaaagccataggtttctgtcggccaaggacaacgtggagacttcttgaagagattaattgttcattcaaagtgtttcttaatctgatggttacatcttaactctacctgcactcttatggatgtgtcttctgcaactaccactagagtctgatgcttaaaatatgttttcatcttggaagtgcgtaggagctagcttccatttcctagttctcttggttgcgtgattcatccaaataatcattagaaggctaaattggttgcaagatacacatcgatagcattatacctaggcatataataatatctatcatggacaaaataaaattattcggttggtaacttgactaactaccaatagtggcaagaataggattaaatactacaaggaaagaattgggaagtaataatataatatgctcattttttcccttttgagagaaacattttttcaagcagcatgaagacctgttcttcagatgccacaaaccagttacttttttcttgacaccgacactaaattaacaaacttaaatttgcttctaattgattacattttctcttaattgcagcagtgacagttaagcttggtagacaaagatccaacaatatggtaagtactaattaatccgtaacaccattgtgtttaaggtcattgaccaaatcaacatggttagctactagcctaccacgtatcctttaaccggacacagctccttagaggggcgtgggtccctgacaggtgggagccagggccaccatcatgggcccacaggtcagtggcgcacgtccctctgacgtagcctcacccccaacctttcagaattagtatatccataacacatgcaggtcgcttgctagtatctctttcctaagatcgtatcaaatcctgtgttaaattggaggaaaacatcatcttgctttcattggagtaactgctggtatagtagtactccattagagcaggtacaatagcagttataaacatattttaatgagataaaagacgagagagaagagcggactacatatctgtagccagctgcagcatggactacaagacgcagtatgacaggtgagaccatatattaatagtatagtaagcaactattatatgaattgactattagattgtctatagataaattggagctagtagtggactatactattaaacttgctcttagagtatactggtattagctagagctagcttggtcatggcagaattgcatcgcagagtgagaattcttcgatccagaaccactgaattcatcctaaaatacagtaaaaaactagtactactgctatcttggatggggtaaaaaacatgtattcacctgagagtctgtgagactgtgaccacattggagacctaagggcaagttttatagtagatgtgactaccacatccaattttatgtattacatagataattaaattaagaggtgatatgtataataggttacctctaccacacaatccccaatatctctaatactctcacatgtttattgaaatttgtgtaggggttgccccttgcatgagaggtgactatttctctctcatccttcttctctcctccacctcactatttagtcatatgtgacatcttggaacttatacttggatgcccatagtacttgccctaaattacccttccgtattctaactaatcttcttccttttctttatatgctggcacagtgccatttccactaaagaatggatcacagttcaacacttcaactctctaggtgaaaaaaaaagttaccgcctttcctcgaagaaattaaactacttcacccttcaggacgaatgattcttcgacgaggaagaggcgaaggtagatcggcagcaggcagtggacggcatcattctgtcagggaggaacagaagaaacaaaaaggagagagagagagagagagagagagagagagagagagagagagagagagtgagggaaaaggcatcccaatgttggttagtcttaatccaaccctcggttgagcagataaggagtcatctgatccgtccatttttaggaatctgtaagcgaaggttgaaccttgaaacacagcatgattggagaagacgggcggtttggaatttctcaaagtgaaattcgaactcttctttttaaaaaagatgtgacatatcgaactcgaagcaaaatactgtgcaatttcctcgatgatgaggcaaggtcagcggagtgggttctagaattggcggctaccagatggatcagggttgagaagtagaagaagaagggaagagagcggtatgcagcttgccttgtctgaagaacaaattcaagaacacaactcactagaactgttgtattgatttgctgcaagaacctgcatgttttgagtttctgcagggaattctggaggttcaattcctacaatgctgaaactcctcaagattcagttcaaatccaaagtggggaagaagcaaagcgattcaagaagagccgcaatgtgggtgttaaataaacacaccaagatgagaaaaaaatttgaagaacagaagcagaaaccgaaattcaggccaaaaatcatcatcaacacagtgggaactctttccggcaagagaaagatttatgcgcattgactaatactagagattaacagggaaggggggagacgatggtagggacctaacctcagacgctgctggttccatggtgatggagctccatctccaaaaaggtccaaagtggagagcctctctctgttaaattgggagtttggagtgagcagagcagaggcaaggcaaagcaggtgcagccttgaatgcactgtggactcactctgcctgctgggaggggaggacaagtgaatgtgacatgccttacattaagagagaattattactagtgtgggagagagtatgaggcaatgggggaaacaaagtcagccgctcctccgcccttaattttgtctgcattccagttcactccatttgcatttgcagcgcactacgtacaacgcctcgcctcacggctcacgcacgacaccgcctccgaatcaaacctcaatccatccatggcgccgcat
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| CDS seq | atggatgtacacaagaaacttctcctggcctccctcagctgtgtacttctgatccaagtagcatcgagtgatggcactgcagagggagttggaacaacaagctggacatgtgtatgcacagctcatccactaggtgaaccaaactcaaatagcagcttgtcgtcgaattgttcttcttcctgccattgtctacaagcagatgatgatggtggcacaggatcatggaactgcacatgtgcttctgacaaagcccttaaaaaagaacacactgcagtacatgataggggctgcttcacttcctgtaactgcacatccggaatttctcaggaaggaaagaagcacgtctctaacaaaacagtgatagttacactgctagtatgtgtgatcctcaccactattgcattccttggcaccacggcgtactacctgcgtcgcaaggatgcgctctctccacattcgcatgcatactcctttgataagtacaccagctggagcagcagatcaaacctcgtcagtcatcgatcttctcctcttccccaaccaaagccaaaaccaaggatcagtgtacttaaagagtttctgtgcagctgcaatccaatatgtggcaatgaaggtggtccgcttcccggtgtcatcgtcaggttctcctactcggaattggagcaagcaaccgggaaattttcagatgaacatctgatcggagttggaggaacaagcaaggtgtaccgtggacagcttagcgacgccaaggtcattgccgtgaagaagctcaggcccctcggaggcgcagacgaagacttcgagttcctatccgaggttgagctgctgtctcggctgaaccactgccatgtcgtgccattgctgggttactgcatggagagccagggccggcagctggagcggctgctggcgtcgctcaagtcggacgtgttcagcttcggcgtggtcatcctggagctcatcacggggcggcagccgatccaccaccaccgcccgccggcggcggcgggggagagcctggtcctgtgggcggcgccgcggctgcgcgacagccggctggtggtggcggagctgccggacccggcgctgcaggggcggttcccgcaggaggagatgcagatcatggcgcacctggcgcgggagtgcctgcagtgggagcccgagtcgcgtcccaccatgagcgaggtcgtccagatcctcgccaccatcgctccttcctcccgcaagcacgccgccgccgccaccttggtcacccgcatcgggagaagcagcagcgccggcgacacgatgcacagcactaggttagccgtgaagtgcagcgtcggagagagttggcgatcgccggagatggaggaggagacggtggtggacttgacggagccacggctggagccggccatcttcttcaattag
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| Protein seq | MDVHKKLLLASLSCVLLIQVASSDGTAEGVGTTSWTCVCTAHPLGEPNSNSSLSSNCSSSCHCLQADDDGGTGSWNCTCASDKALKKEHTAVHDRGCFTSCNCTSGISQEGKKHVSNKTVIVTLLVCVILTTIAFLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSNLVSHRSSPLPQPKPKPRISVLKEFLCSCNPICGNEGGPLPGVIVRFSYSELEQATGKFSDEHLIGVGGTSKVYRGQLSDAKVIAVKKLRPLGGADEDFEFLSEVELLSRLNHCHVVPLLGYCMESQGRQLERLLASLKSDVFSFGVVILELITGRQPIHHHRPPAAAGESLVLWAAPRLRDSRLVVAELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLAVKCSVGESWRSPEMEEETVVDLTEPRLEPAIFFN |
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| Function | Receptor-like serine/threonine-protein kinase NCRK [UniProtKB/Swiss-Prot:Q8VYY5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0000860 | OsLima_02g0000860.04 | Chr02 | 565224 | 567884 | - | NAM | ||
| CDS seq | atggatgtacacaagaaacttctcctggcctccctcagctgtgtacttctgatccaagtagcatcgagtgatggcactgcagagggagttggaacaacaagctggacatgtgtatgcacagctcatccactaggtgaaccaaactcaaatagcagcttgtcgtcgaattgttcttcttcctgccattgtctacaagcagatgatgatggtggcacaggatcatggaactgcacatgtgcttctgacaaagcccttaaaaaagaacacactgcagtacatgataggggctgcttcacttcctgtaactgcacatccggaatttctcaggaaggaaagaagcacgtctctaacaaaacagtgatagttacactgctagtatgtgtgatcctcaccactattgcattccttggcaccacggcgtactacctgcgtcgcaaggatgcgctctctccacattcgcatgcatactcctttgataagtacaccagctggagcagcagatcaaacctcgtcagtcatcgatcttctcctcttccccaaccaaagccaaaaccaaggatcagtgtacttaaagagtttctgtgcagctgcaatccaatatgtggcaatgaaggtggtccgcttcccggtgtcatcgtcaggttctcctactcggaattggagcaagcaaccgggaaattttcagatgaacatctgatcggagttggaggaacaagcaaggtgtaccgtggacagcttagcgacgccaaggtcattgccgtgaagaagctcaggcccctcggaggcgcagacgaagacttcgagttcctatccgaggttgagctgctgtctcggctgaaccactgccatgtcgtgccattgctgggttactgcatggagagccagggccggcagctggagcggctgctggcgtcgctcaagtcggacgtgttcagcttcggcgtggtcatcctggagctcatcacggggcggcagccgatccaccaccaccgcccgccggcggcggcgggggagagcctggtcctgtgggcggcgccgcggctgcgcgacagccggctggtggtggcggagctgccggacccggcgctgcaggggcggttcccgcaggaggagatgcagatcatggcgcacctggcgcgggagtgcctgcagtgggagcccgagtcgcgtcccaccatgagcgaggtcgtccagatcctcgccaccatcgctccttcctcccgcaagcacgccgccgccgccaccttggtcacccgcatcgggagaagcagcagcgccggcgacacgatgcacagcactaggttagccgtgaagtgcagcgtcggagagagttggcgatcgccggagatggaggaggagacggtggtggacttgacggagccacggctggagccggccatcttcttcaattag
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| Protein seq | MDVHKKLLLASLSCVLLIQVASSDGTAEGVGTTSWTCVCTAHPLGEPNSNSSLSSNCSSSCHCLQADDDGGTGSWNCTCASDKALKKEHTAVHDRGCFTSCNCTSGISQEGKKHVSNKTVIVTLLVCVILTTIAFLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSNLVSHRSSPLPQPKPKPRISVLKEFLCSCNPICGNEGGPLPGVIVRFSYSELEQATGKFSDEHLIGVGGTSKVYRGQLSDAKVIAVKKLRPLGGADEDFEFLSEVELLSRLNHCHVVPLLGYCMESQGRQLERLLASLKSDVFSFGVVILELITGRQPIHHHRPPAAAGESLVLWAAPRLRDSRLVVAELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLAVKCSVGESWRSPEMEEETVVDLTEPRLEPAIFFN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0000860 | OsLima_02g0000860.02 | Chr02 | 565224 | 571812 | - | NAM | ||
| CDS seq | atggatgtacacaagaaacttctcctggcctccctcagctgtgtacttctgatccaagtagcatcgagtgatggcactgcagagggagttggaacaacaagctggacatgtgtatgcacagctcatccactaggtgaaccaaactcaaatagcagcttgtcgtcgaattgttcttcttcctgccattgtctacaagcagatgatgatggtggcacaggatcatggaactgcacatgtgcttctgacaaagcccttaaaaaagaacacactgcagtacatgataggggctgcttcacttcctgtaactgcacatccggaatttctcaggaaggaaagaagcacgtctctaacaaaacagtgatagttacactgctagtatgtgtgatcctcaccactattgcattccttggcaccacggcgtactacctgcgtcgcaaggatgcgctctctccacattcgcatgcatactcctttgataagtacaccagctggagcagcagatcaaacctcgtcagtcatcgatcttctcctcttccccaaccaaagccaaaaccaaggatcagtgtacttaaagagtttctgtgcagctgcaatccaatatgtggcaatgaaggtggtccgcttcccggtgtcatcgtcaggttctcctactcggaattggagcaagcaaccgggaaattttcagatgaacatctgatcggagttggaggaacaagcaaggtgtaccgtggacagcttagcgacgccaaggtcattgccgtgaagaagctcaggcccctcggaggcgcagacgaagacttcgagttcctatccgaggttgagctgctgtctcggctgaaccactgccatgtcgtgccattgctgggttactgcatggagagccagggccggcagctggagcggctgctggcgtcgctcaagtcggacgtgttcagcttcggcgtggtcatcctggagctcatcacggggcggcagccgatccaccaccaccgcccgccggcggcggcgggggagagcctggtcctgtgggcggcgccgcggctgcgcgacagccggctggtggtggcggagctgccggacccggcgctgcaggggcggttcccgcaggaggagatgcagatcatggcgcacctggcgcgggagtgcctgcagtgggagcccgagtcgcgtcccaccatgagcgaggtcgtccagatcctcgccaccatcgctccttcctcccgcaagcacgccgccgccgccaccttggtcacccgcatcgggagaagcagcagcgccggcgacacgatgcacagcactaggttagccgtgaagtgcagcgtcggagagagttggcgatcgccggagatggaggaggagacggtggtggacttgacggagccacggctggagccggccatcttcttcaattag
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| Protein seq | MDVHKKLLLASLSCVLLIQVASSDGTAEGVGTTSWTCVCTAHPLGEPNSNSSLSSNCSSSCHCLQADDDGGTGSWNCTCASDKALKKEHTAVHDRGCFTSCNCTSGISQEGKKHVSNKTVIVTLLVCVILTTIAFLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSNLVSHRSSPLPQPKPKPRISVLKEFLCSCNPICGNEGGPLPGVIVRFSYSELEQATGKFSDEHLIGVGGTSKVYRGQLSDAKVIAVKKLRPLGGADEDFEFLSEVELLSRLNHCHVVPLLGYCMESQGRQLERLLASLKSDVFSFGVVILELITGRQPIHHHRPPAAAGESLVLWAAPRLRDSRLVVAELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLAVKCSVGESWRSPEMEEETVVDLTEPRLEPAIFFN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0000860 | OsLima_02g0000860.03 | Chr02 | 565224 | 568385 | - | NAM | ||
| CDS seq | atggatgtacacaagaaacttctcctggcctccctcagctgtgtacttctgatccaagtagcatcgagtgatggcactgcagagggagttggaacaacaagctggacatgtgtatgcacagctcatccactaggtgaaccaaactcaaatagcagcttgtcgtcgaattgttcttcttcctgccattgtctacaagatgatgatggtggcacaggatcatggaactgcacatgtgcttctgacaaagcccttaaaaaagaacacactgcagtacatgataggggctgcttcacttcctgtaactgcacatccggaatttctcaggaaggaaagaagcacgtctctaacaaaacagtgatagttacactgctagtatgtgtgatcctcaccactattgcattccttggcaccacggcgtactacctgcgtcgcaaggatgcgctctctccacattcgcatgcatactcctttgataagtacaccagctggagcagcagatcaaacctcgtcagtcatcgatcttctcctcttccccaaccaaagccaaaaccaaggatcagtgtacttaaagagtttctgtgcagctgcaatccaatatgtggcaatgaaggtggtccgcttcccggtgtcatcgtcaggttctcctactcggaattggagcaagcaaccgggaaattttcagatgaacatctgatcggagttggaggaacaagcaaggtgtaccgtggacagcttagcgacgccaaggtcattgccgtgaagaagctcaggcccctcggaggcgcagacgaagacttcgagttcctatccgaggttgagctgctgtctcggctgaaccactgccatgtcgtgccattgctgggttactgcatggagagccagggccggcagctggagcggctgctggcgtcgctcaagtcggacgtgttcagcttcggcgtggtcatcctggagctcatcacggggcggcagccgatccaccaccaccgcccgccggcggcggcgggggagagcctggtcctgtgggcggcgccgcggctgcgcgacagccggctggtggtggcggagctgccggacccggcgctgcaggggcggttcccgcaggaggagatgcagatcatggcgcacctggcgcgggagtgcctgcagtgggagcccgagtcgcgtcccaccatgagcgaggtcgtccagatcctcgccaccatcgctccttcctcccgcaagcacgccgccgccgccaccttggtcacccgcatcgggagaagcagcagcgccggcgacacgatgcacagcactaggttagccgtgaagtgcagcgtcggagagagttggcgatcgccggagatggaggaggagacggtggtggacttgacggagccacggctggagccggccatcttcttcaattag
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| Protein seq | MDVHKKLLLASLSCVLLIQVASSDGTAEGVGTTSWTCVCTAHPLGEPNSNSSLSSNCSSSCHCLQDDDGGTGSWNCTCASDKALKKEHTAVHDRGCFTSCNCTSGISQEGKKHVSNKTVIVTLLVCVILTTIAFLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSNLVSHRSSPLPQPKPKPRISVLKEFLCSCNPICGNEGGPLPGVIVRFSYSELEQATGKFSDEHLIGVGGTSKVYRGQLSDAKVIAVKKLRPLGGADEDFEFLSEVELLSRLNHCHVVPLLGYCMESQGRQLERLLASLKSDVFSFGVVILELITGRQPIHHHRPPAAAGESLVLWAAPRLRDSRLVVAELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLAVKCSVGESWRSPEMEEETVVDLTEPRLEPAIFFN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0000860 | OsLima_02g0000860.05 | Chr02 | 565224 | 566925 | - | NAM | ||
| CDS seq | atgtgcatatgctgtccaggaatttctcaggaaggaaagaagcacgtctctaacaaaacagtgatagttacactgctagtatgtgtgatcctcaccactattgcattccttggcaccacggcgtactacctgcgtcgcaaggatgcgctctctccacattcgcatgcatactcctttgataagtacaccagctggagcagcagatcaaacctcgtcagtcatcgatcttctcctcttccccaaccaaagccaaaaccaaggatcagtgtacttaaagagtttctgtgcagctgcaatccaatatgtggcaatgaaggtggtccgcttcccggtgtcatcgtcaggttctcctactcggaattggagcaagcaaccgggaaattttcagatgaacatctgatcggagttggaggaacaagcaaggtgtaccgtggacagcttagcgacgccaaggtcattgccgtgaagaagctcaggcccctcggaggcgcagacgaagacttcgagttcctatccgaggttgagctgctgtctcggctgaaccactgccatgtcgtgccattgctgggttactgcatggagagccagggccggcagctggagcggctgctggcgtcgctcaagtcggacgtgttcagcttcggcgtggtcatcctggagctcatcacggggcggcagccgatccaccaccaccgcccgccggcggcggcgggggagagcctggtcctgtgggcggcgccgcggctgcgcgacagccggctggtggtggcggagctgccggacccggcgctgcaggggcggttcccgcaggaggagatgcagatcatggcgcacctggcgcgggagtgcctgcagtgggagcccgagtcgcgtcccaccatgagcgaggtcgtccagatcctcgccaccatcgctccttcctcccgcaagcacgccgccgccgccaccttggtcacccgcatcgggagaagcagcagcgccggcgacacgatgcacagcactaggttagccgtgaagtgcagcgtcggagagagttggcgatcgccggagatggaggaggagacggtggtggacttgacggagccacggctggagccggccatcttcttcaattag
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| Protein seq | MCICCPGISQEGKKHVSNKTVIVTLLVCVILTTIAFLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSNLVSHRSSPLPQPKPKPRISVLKEFLCSCNPICGNEGGPLPGVIVRFSYSELEQATGKFSDEHLIGVGGTSKVYRGQLSDAKVIAVKKLRPLGGADEDFEFLSEVELLSRLNHCHVVPLLGYCMESQGRQLERLLASLKSDVFSFGVVILELITGRQPIHHHRPPAAAGESLVLWAAPRLRDSRLVVAELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLAVKCSVGESWRSPEMEEETVVDLTEPRLEPAIFFN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0000860 | OsLima_02g0000860.01 | Chr02 | 565224 | 571812 | - | NAM | ||
| CDS seq | atggatgtacacaagaaacttctcctggcctccctcagctgtgtacttctgatccaagtagcatcgagtgatggcactgcagagggagttggaacaacaagctggacatgtgtatgcacagctcatccactaggtgaaccaaactcaaatagcagcttgtcgtcgaattgttcttcttcctgccattgtctacaagatgatgatggtggcacaggatcatggaactgcacatgtgcttctgacaaagcccttaaaaaagaacacactgcagtacatgataggggctgcttcacttcctgtaactgcacatccggaatttctcaggaaggaaagaagcacgtctctaacaaaacagtgatagttacactgctagtatgtgtgatcctcaccactattgcattccttggcaccacggcgtactacctgcgtcgcaaggatgcgctctctccacattcgcatgcatactcctttgataagtacaccagctggagcagcagatcaaacctcgtcagtcatcgatcttctcctcttccccaaccaaagccaaaaccaaggatcagtgtacttaaagagtttctgtgcagctgcaatccaatatgtggcaatgaaggtggtccgcttcccggtgtcatcgtcaggttctcctactcggaattggagcaagcaaccgggaaattttcagatgaacatctgatcggagttggaggaacaagcaaggtgtaccgtggacagcttagcgacgccaaggtcattgccgtgaagaagctcaggcccctcggaggcgcagacgaagacttcgagttcctatccgaggttgagctgctgtctcggctgaaccactgccatgtcgtgccattgctgggttactgcatggagagccagggccggcagctggagcggctgctggcgtcgctcaagtcggacgtgttcagcttcggcgtggtcatcctggagctcatcacggggcggcagccgatccaccaccaccgcccgccggcggcggcgggggagagcctggtcctgtgggcggcgccgcggctgcgcgacagccggctggtggtggcggagctgccggacccggcgctgcaggggcggttcccgcaggaggagatgcagatcatggcgcacctggcgcgggagtgcctgcagtgggagcccgagtcgcgtcccaccatgagcgaggtcgtccagatcctcgccaccatcgctccttcctcccgcaagcacgccgccgccgccaccttggtcacccgcatcgggagaagcagcagcgccggcgacacgatgcacagcactaggttagccgtgaagtgcagcgtcggagagagttggcgatcgccggagatggaggaggagacggtggtggacttgacggagccacggctggagccggccatcttcttcaattag
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| Protein seq | MDVHKKLLLASLSCVLLIQVASSDGTAEGVGTTSWTCVCTAHPLGEPNSNSSLSSNCSSSCHCLQDDDGGTGSWNCTCASDKALKKEHTAVHDRGCFTSCNCTSGISQEGKKHVSNKTVIVTLLVCVILTTIAFLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSNLVSHRSSPLPQPKPKPRISVLKEFLCSCNPICGNEGGPLPGVIVRFSYSELEQATGKFSDEHLIGVGGTSKVYRGQLSDAKVIAVKKLRPLGGADEDFEFLSEVELLSRLNHCHVVPLLGYCMESQGRQLERLLASLKSDVFSFGVVILELITGRQPIHHHRPPAAAGESLVLWAAPRLRDSRLVVAELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLAVKCSVGESWRSPEMEEETVVDLTEPRLEPAIFFN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0000860 | OsLima_02g0000860.06 | Chr02 | 565085 | 565762 | - | IsoSeq | ||
| CDS seq | tacttcgcgccggagtacgccatcgtggggaaggcgtcgctcaagtcggacgtgttcagcttcggcgtggtcatcctggagctcatcacggggcggcagccgatccaccaccaccgcccgccggcggcggcgggggagagcctggtcctgtgggcggcgccgcggctgcgcgacagccggctggtggtggcggagctgccggacccggcgctgcaggggcggttcccgcaggaggagatgcagatcatggcgcacctggcgcgggagtgcctgcagtgggagcccgagtcgcgtcccaccatgagcgaggtcgtccagatcctcgccaccatcgctccttcctcccgcaagcacgccgccgccgccaccttggtcacccgcatcgggagaagcagcagcgccggcgacacgatgcacagcactaggttagccgtgaagtgcagcgtcggagagagttggcgatcgccggagatggaggaggagacggtggtggacttgacggagccacggctggagccggccatcttcttc
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| Protein seq | YFAPEYAIVGKASLKSDVFSFGVVILELITGRQPIHHHRPPAAAGESLVLWAAPRLRDSRLVVAELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLAVKCSVGESWRSPEMEEETVVDLTEPRLEPAIFF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 567120 | 567196 | - | OsLima_02g0000860.04,OsLima_02g0000860.02 | OsLima_02g0000860.03,OsLima_02g0000860.02,OsLima_02g0000860.04,OsLima_02g0000860.01 | All |
| A3 | Chr02 | 567515 | 571418 | - | OsLima_02g0000860.01 | OsLima_02g0000860.02,OsLima_02g0000860.01 | All |
| AF | Chr02 | 567565 | 571812 | - | OsLima_02g0000860.03 | OsLima_02g0000860.03,OsLima_02g0000860.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.607460 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0110600 | RBH | 0.214538 | 0.711063 | 0.524356 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02040 | RBH | 0.136618 | 0.435070 | 0.127105 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0110600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0000850 | RBH | 0.068876 | 16.274157 | 3.294315 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0000890 | RBH | 0.664200 | 7.780845 | 1.301282 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000860 | RBH | 0.000000 | 41.737000 | 3.894512 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0000860 | RBH | 0.000000 | 0.809568 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0000850 | RBH | 0.0 | 24.590620 | 10.106607 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0009900 | SBH | 4.9248305 | 23.2163975 | 29.0169325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0000870 | RBH | 0.0 | 1.377540 | 0.462578 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0010800 | RBH | 6.9378385 | 0.5583985 | 9.180582 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0005970 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0000840 | RBH | 0.000000 | 6.993703 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0000880 | RBH | 0.0 | 45.368179 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0000890 | RBH | 0.680992 | 1.807818 | 0.625554 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0000850 | RBH | 0.264486 | 18.337103 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G000870 | RBH | 0.075088 | 10.227449 | 0.973016 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0000850 | RBH | 0.439464 | 16.640537 | 1.920153 |
