Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0046810 | OGI:01124090 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:44061651-44068193 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcaaactagtagcgttttgttcagttcagcaatggtcaattgacacaatgacactgcaacctcttctgtgataggacacagtgatactgcaacctctttatactcattctgtttacagattacatacaccattcacttctctgtaaatgacattgctcccttgcattcgcgaattagatgtatatatacataaacattgctactctgctctaccactttcatttttgtcgctctttacattcttatccactataaagatatagtaaatcctaccaatacgatccgacattctaaaaccacatcagcaattcagcgtcgtaggggagaaacaccataactgacagaggccaccaccaacttccttcaagtagcaaaaggtgccttgaggtatccacatcaatttgcatgtcctgtataactcttccacaggcgtctggaaattatcttcagagagtacacatttttggctcagaaaagtccagtggtccaattcagttggctgatatagtcggggggcgctcaattatgcattggtggcactggcatgaaccacttcgtctgaagaatcatctgccttggtcgcagcagatctcaacgtgctttgctgtctcttgtagttagccatgcgacggttgctctccatccaaatgagaagaacagtcatatcagctgggctcaccccgccaattctgctagcctggcctattgtttgtggccttacctaaacataccacataatataaattgcattgcacggtgaaaaaaattagttgtattaaatgcaaatctagcagcttgaatttcttacagatcatgaatgatattcagttgccaaattgtaaaacttagataatgtgtgcacgacacaatttcaggcaagatatgatcaccagaaccttcagcagctgatatattgagaattctaaagcattttaaaaacaaattatctcagatgactgaggtgtagataacatgtgtgtcaacaaatagagaaccgtataatgcatttcatttatatatgttgacaggtcatctgctatataaggttcttaacatgaagaagatcacacacctttgaaagtttctcacgagcttcaagtgacaggtttgtcattgaatgataatctaagtcttcaggaagcttcttgtgctcctgatttacaatctgatgaagagaaaaaaataaaacgaggggtcagcatatcttctaggtagaaaaaacaagaggtgttaaacaaaggaatatgaaacaacatcagaattctatattacattgctgaatataaataatcaactacatctctcaagttaggaggcccaacagaacacagctacacaaaagctgataaataatcaactagtgctcccaatttgggaagcccaacagaatacagctaccaaagagctaaacaagttcctcaatatgcattgaattacatcttaaatgtttatgcacattttttctttcagttcaaagagcctcccttataagtgcatcttaggaagtaggacaaatgcacatgatccacaaagcaaattacctgctgcaattgactttgctgccgtgctataaaaccttcgtacttaatatcaatctccacacattctttctcaattcgagacaaatgttcatttccatatccatgtttgtcaagaagtttatactgtacatgtggcttcttcagtatggcttcaagtgtagatgattcttttacaggttggttggatacagaggtaaccgcagcagcaaattcacctcctgagaacggaaataccgagttagagcatctgaattcatgctagtgactatactgagcaagtgcatgttggtactagcattttaaaacttggcatgaattcatgaagcatttcaaaaaagatagaatttacctgggatttttgtagatttcaatcgttctttttcctctttaatccgggcttgctttgattgataaagctcccatcgtctatcatctatcaaaccaatatctcgtcccaaaggagtcaaccgactatcagcattatcagctcgaagcaatagacggtgttctgaacggctgaatgtatgtatgtagcaaCaaaaaaaaaaaggtcaacaaagttatgattcaagaaatcataatgctaccagtacctactggtaaagccacttaccggctgactgtttttccctgatcatattgaactagtaatgtgttaagtttctagtttctaatggattacacaatgtacaaagcatagcatgtttctgatagttagccgaagagagtatcaaaaattaacatcctattgcaacacatctctaatcaggttaccattggcccctccatttaaatagttcatttgattacacattatctaatgagaattatgaccattattctatggcaaattggcgcccacagactcttagcttctcagagtaacacataatctagtactaattaggatacacagttatatcaccaattgcttcagcttaatacaaccatcattggccgtgcgtcaccttgtgtgatgtttttgtgggtgtgtttgggtggagggcttgtgagccctgattgtatgggtgtttgttttttccttcttaatgaaatgaaacacacctctcctgcattttctaaaaaagaaaaatacaaccatcatactaatagcattcgtacagaaaaaaaaacataccttgttaacatgcgataaggctccctaagatcttttgtgacaagatcatcaatcagagtcccaatataactgctttctctctcaagaatgataagtggctttccatcagaatgcctagctgcatttattccggaaattataccctgtaaacaaaagtaagcaagcttaggattcaaaaaaacttgttgaacaaccatataaacacagcaaagaaaataaattaacctgagctgcagcttcttcatatcctgttgttccgttaatctggccagagaagaataagccctcaaacttcttggtcataagtgatcttgagcactggtaagctggcaagtaatcatattcaacagcataagccggccttagcatcacacaattctccagtcccggtagtgttctcacaagtgataattgcaatcgctcaggaagcccagtggaaaacccctgcttacgatgtacaaatgatcttgagtggtcggaattgggataaacaacagtgcagaagacattattttcaataaaatgggggatagaatattggagaaccacaatagatgattaataaatatgactagagagtgcaaaacagtgcagaaggcattatttttaaaaaataggggacaagagaaccataatagatgattaataaatacaaccatgatataaaatatgttgaatggatagagggagttctggatgtagattgacctgcagataaagctcaggaacatctctgccctctggttcaagaaatacctgatgggactctttgtctttgaaccttacaatctgaagcaaagatagtctggttatcctcatgattgtgccataacgtgaacaacctcttccttagcaataataagtttgattacacgtactaaaatagaataatctgccatttaacaaactaaaaaactcagatggtagaattataccttgtcttcaattgctggacagtatcttggtccctttgcttctacccaaccaccataagttggtgtttcatccaagttatctctaacaatttgatgtgtctcttttgtagtccttgttaaatagcagcacatttggtccctctcaatatggaattcaggatcaaaactaaaccagccaacctgtttaaagagaaaccatcttttgaacatttacatatatggtcaaagcaaacttgaactgcaaacttaagcagctgataagtcatagattcataaacgcaactaagtgcacaaagtatgcagcagatactacaggtgcaggaaatgttgttcaaagtctatcggagaaaataccacatacatttggaaatatttgaacaagaaggttcaaattgtgcaaagtccattcaatctattttctgtgccagatcgatagcaaaagaatcaattatccacaagggttcacaactttgatcaatcattacataaaacgaacactgtattcaaggggtgcttttgaaattttgacttctaatcagagagaaaccaaattaactgtcacaacagaagcacagtgcttctagatcttactaataagagtacaaaaggcgttgctttaacaatgaaatgtaaagtggcaaatgaaagagagaagcaaaagtatataagaatgacggaatttgcattttcagatacaagtggaagatgacacttgtatataacgaataacaaaaaacttcactcatacatattgtcagatgttccatacctcttcatcaccatgctggggttccaatccagaaaagttaacagtcctgcgatcaattcgtggtggtgtgccagtttttaagcggtcagtttcaaaacccaactgctgcaagttttcagtgagtccatgtgaagctgactctccagctcgcccggcaggcattgaagtcctacctacccaaatcttaccactcatgaatgttccagtggtaagtacaacagatggtgcataaaagtccatgccgaagaaagtgcggacaccctcaacattgtcgttctggcctatcataacctctgtagccattgcctctctaatgaaaagattttgtgtgctgaaaaatagcatatgcaataatcagtaaataacatgaaagatattacactaaagtacctgcattcaacaacaacatatttctagatatcacaagaacacatcaactatatttgttgaatttataggtaaaagatatgcagaaacagattcacctctactcaagaaattagaattaacatctagtcaatagtctttggtcaggaccaatcaaaacacatgtcaaatgaatgaagttgtcttcataggttaaactaataaaacacaagccttgtgactctgtggataaccatgtacaacttaagaatatctgaaacgcgtgaataactccagccaattcagaatttacacagcacgctcgctcttattcagaaatcaggagggagtagtttggtgtcttttgatttacctaaaaggcaaacaaattcgaatatagtttgtaaattctgataaaagacgagagtgcatattgacctttcaacaactttcttcatctctactgcatactccctcttgtcagtctgagcacgcagtgcacgtacagcagggccttttgagctgtttagcacacgcttttgtaggtagcacctaagagatgaagtaatcagtatgacaatagatctttgaggatttcggtgcaggtttcatctctcagacctacacaccaactaaaagtccaaaaagtaggggaaaagaaaatctatctatctaaaataatgaaccaattaaatgtacctgtctgcaattttccccatttcaccaccaagggcatctacctcatgaacaagttgagactttgcaggccctcccacggcagggttgcaaggctatgcaacataaggaataaaagaagagttaggacaggtagccatattacaatagtaacacaatgttccctttgttaaaaaggttgatttgctaagatccttatagcctagactgaggacataccacgttggaaactatccttgtactatgagttccaaaaatgtatgtatgtaagcatttcatccactatacatgccatatcataattttctaagaaaaatccgtggatttgacatgcacttatacaagtcttatgaaacatggttcaattgcttgcttcatgttgtatggggtatatgattgcagattttaactaactatgccacaaggaatcaatgaccacatatttttagcatatgatcttttactacctaactttgcttttgtaaccaagatacaggaatcataaagaaagtacaatttggtctaatggaaggatatggtagtacacaaatgaagaaatctagtaagtgaaaaattgcaatggagctcagtgttagacctgccacgcaatccgatcaatgttaagcgtaaggaggagggtgcgcgcaccaagacgagccgacgcaagcgcggcctcacatccggcatggcctcctccaaccacaatcacatcgtatcgctcctcaagacttgtcgagcctaatgccagaatagcagaaacccatccatcaattagaatcgttttcgcttgtttcatgtggtcgcaaatactcagatccccatcgaccactacgaggtgagcagcgttacctttggaggaggaggaggaggaggcgacggcagtggagaggaggcggcggcggcgcggaggaggaggaggaggagggcgccaggacggcgagtggaggaagcgcctgaagggggagaaggggaggaaggatgcgaggctggcggccggctgcggcggcggacggaggcggagcagcatggccgccgatgaggtcgacgaaacggcggcggcggaatttttcgcggctcgctgtggctcaggatgaggct
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| CDS seq | atgctgctccgcctccgtccgccgccgcagccggccgccagcctcgcatccttcctccccttctcccccttcaggcgcttcctccactcgccgtcctggcgccctcctcctcctcctcctccgcgccgccgccgcctcctctccactgccgtcgcctcctcctcctcctcctccaaaggctcgacaagtcttgaggagcgatacgatgtgattgtggttggaggaggccatgccggatgtgaggccgcgcttgcgtcggctcgtcttggtgcgcgcaccctcctccttacgcttaacattgatcggattgcgtggcagccttgcaaccctgccgtgggagggcctgcaaagtctcaacttgttcatgaggtagatgcccttggtggtgaaatggggaaaattgcagacaggtgctacctacaaaagcgtgtgctaaacagctcaaaaggccctgctgtacgtgcactgcgtgctcagactgacaagagggagtatgcagtagagatgaagaaagttgttgaaagcacacaaaatcttttcattagagaggcaatggctacagaggttatgataggccagaacgacaatgttgagggtgtccgcactttcttcggcatggacttttatgcaccatctgttgtacttaccactggaacattcatgagtggtaagatttgggtaggtaggacttcaatgcctgccgggcgagctggagagtcagcttcacatggactcactgaaaacttgcagcagttgggttttgaaactgaccgcttaaaaactggcacaccaccacgaattgatcgcaggactgttaacttttctggattggaaccccagcatggtgatgaagaggttggctggtttagttttgatcctgaattccatattgagagggaccaaatgtgctgctatttaacaaggactacaaaagagacacatcaaattgttagagataacttggatgaaacaccaacttatggtggttgggtagaagcaaagggaccaagatactgtccagcaattgaagacaagattgtaaggttcaaagacaaagagtcccatcaggtatttcttgaaccagagggcagagatgttcctgagctttatctgcaggggttttccactgggcttcctgagcgattgcaattatcacttgtgagaacactaccgggactggagaattgtgtgatgctaaggccggcttatgctgttgaatatgattacttgccagcttaccagtgctcaagatcacttatgaccaagaagtttgagggcttattcttctctggccagattaacggaacaacaggatatgaagaagctgcagctcagggtataatttccggaataaatgcagctaggcattctgatggaaagccacttatcattcttgagagagaaagcagttatattgggactctgattgatgatcttgtcacaaaagatcttagggagccttatcgcatccgttcagaacaccgtctattgcttcgagctgataatgctgatagtcggttgactcctttgggacgagatattggtttgatagatgatagacgatgggagctttatcaatcaaagcaagcccggattaaagaggaaaaagaacgattgaaatctacaaaaatcccaggaggtgaatttgctgctgcggttacctctgtatccaaccaacctgtaaaagaatcatctacacttgaagccatactgaagaagccacatgtacagtataaacttcttgacaaacatggatatggaaatgaacatttgtctcgaattgagaaagaatgtgtggagattgatattaagtacgaaggttttatagcacggcagcaaagtcaattgcagcagattgtaaatcaggagcacaagaagcttcctgaagacttagattatcattcaatgacaaacctgtcacttgaagctcgtgagaaactttcaaaggtaaggccacaaacaataggccaggctagcagaattggcggggtgagcccagctgatatgactgttcttctcatttggatggagagcaaccgtcgcatggctaactacaagagacagcaaagcacgttgagatctgctgcgaccaaggcagatgattcttcagacgaagtggttcatgccagtgccaccaatgcataa
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| Protein seq | MLLRLRPPPQPAASLASFLPFSPFRRFLHSPSWRPPPPPPPRRRRLLSTAVASSSSSSKGSTSLEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIREAMATEVMIGQNDNVEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQQLGFETDRLKTGTPPRIDRRTVNFSGLEPQHGDEEVGWFSFDPEFHIERDQMCCYLTRTTKETHQIVRDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLEPEGRDVPELYLQGFSTGLPERLQLSLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLMTKKFEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIILERESSYIGTLIDDLVTKDLREPYRIRSEHRLLLRADNADSRLTPLGRDIGLIDDRRWELYQSKQARIKEEKERLKSTKIPGGEFAAAVTSVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSRIEKECVEIDIKYEGFIARQQSQLQQIVNQEHKKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQASRIGGVSPADMTVLLIWMESNRRMANYKRQQSTLRSAATKADDSSDEVVHASATNA |
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| Function | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [UniProtKB/Swiss-Prot:Q110Q9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0046810 | OsLima_01g0046810.02 | Chr01 | 44061692 | 44068175 | - | NAM | ||
| CDS seq | atgctgctccgcctccgtccgccgccgcagccggccgccagcctcgcatccttcctccccttctcccccttcaggcgcttcctccactcgccgtcctggcgccctcctcctcctcctcctccgcgccgccgccgcctcctctccactgccgtcgcctcctcctcctcctcctccaaaggctcgacaagtcttgaggagcgatacgatgtgattgtggttggaggaggccatgccggatgtgaggccgcgcttgcgtcggctcgtcttggtgcgcgcaccctcctccttacgcttaacattgatcggattgcgtggcagccttgcaaccctgccgtgggagggcctgcaaagtctcaacttgttcatgaggtagatgcccttggtggtgaaatggggaaaattgcagacaggtgctacctacaaaagcgtgtgctaaacagctcaaaaggccctgctgtacgtgcactgcgtgctcagactgacaagagggagtatgcagtagagatgaagaaagttgttgaaagcacacaaaatcttttcattagagaggcaatggctacagaggttatgataggccagaacgacaatgttgagggtgtccgcactttcttcggcatggacttttatgcaccatctgttgtacttaccactggaacattcatgagtggtaagatttgggtaggtaggacttcaatgcctgccgggcgagctggagagtcagcttcacatggactcactgaaaacttgcagcagttgggttttgaaactgaccgcttaaaaactggcacaccaccacgaattgatcgcaggactgttaacttttctggattggaaccccagcatggtgatgaagaggttggctggtttagttttgatcctgaattccatattgagagggaccaaatgtgctgctatttaacaaggactacaaaagagacacatcaaattgttagagataacttggatgaaacaccaacttatggtggttgggtagaagcaaagggaccaagatactgtccagcaattgaagacaagattgtaaggttcaaagacaaagagtcccatcaggtatttcttgaaccagagggcagagatgttcctgagctttatctgcaggggttttccactgggcttcctgagcgattgcaattatcacttgtgagaacactaccgggactggagaattgtgtgatgctaaggccggcttatgctgttgaatatgattacttgccagcttaccagtgctcaagatcacttatgaccaagaagtttgagggcttattcttctctggccagattaacggaacaacaggatatgaagaagctgcagctcagggtataatttccggaataaatgcagctaggcattctgatggaaagccacttatcattcttgagagagaaagcagttatattgggactctgattgatgatcttgtcacaaaagatcttagggagccttatcgcatccgttcagaacaccgtctattgcttcgagctgataatgctgatagtcggttgactcctttgggacgagatattggtttgatagatgatagacgatgggagctttatcaatcaaagcaagcccggattaaagaggaaaaagaacgattgaaatctacaaaaatcccaggaggtgaatttgctgctgcggttacctctgtatccaaccaacctgtaaaagaatcatctacacttgaagccatactgaagaagccacatgtacagtataaacttcttgacaaacatggatatggaaatgaacatttgtctcgaattgagaaagaatgtgtggagattgatattaagtacgaaggttttatagcacggcagcaaagtcaattgcagcagattgtaaatcaggagcacaagaagcttcctgaagacttagattatcattcaatgacaaacctgtcacttgaagctcgtgagaaactttcaaaggtaaggccacaaacaataggccaggctagcagaattggcggggtgagcccagctgatatgactgttcttctcatttggatggagagcaaccgtcgcatggctaactacaagagacagcaaagcacgttgagatctgctgcgaccaaggcagatgattcttcagacgaagtggttcatgccagtgccaccaatgcataa
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| Protein seq | MLLRLRPPPQPAASLASFLPFSPFRRFLHSPSWRPPPPPPPRRRRLLSTAVASSSSSSKGSTSLEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIREAMATEVMIGQNDNVEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQQLGFETDRLKTGTPPRIDRRTVNFSGLEPQHGDEEVGWFSFDPEFHIERDQMCCYLTRTTKETHQIVRDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLEPEGRDVPELYLQGFSTGLPERLQLSLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLMTKKFEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIILERESSYIGTLIDDLVTKDLREPYRIRSEHRLLLRADNADSRLTPLGRDIGLIDDRRWELYQSKQARIKEEKERLKSTKIPGGEFAAAVTSVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSRIEKECVEIDIKYEGFIARQQSQLQQIVNQEHKKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQASRIGGVSPADMTVLLIWMESNRRMANYKRQQSTLRSAATKADDSSDEVVHASATNA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0046810 | OsLima_01g0046810.01 | Chr01 | 44061651 | 44068175 | - | NAM | ||
| CDS seq | atgctgctccgcctccgtccgccgccgcagccggccgccagcctcgcatccttcctccccttctcccccttcaggcgcttcctccactcgccgtcctggcgccctcctcctcctcctcctccgcgccgccgccgcctcctctccactgccgtcgcctcctcctcctcctcctccaaaggctcgacaagtcttgaggagcgatacgatgtgattgtggttggaggaggccatgccggatgtgaggccgcgcttgcgtcggctcgtcttggtgcgcgcaccctcctccttacgcttaacattgatcggattgcgtggcagccttgcaaccctgccgtgggagggcctgcaaagtctcaacttgttcatgaggtagatgcccttggtggtgaaatggggaaaattgcagacaggtgctacctacaaaagcgtgtgctaaacagctcaaaaggccctgctgtacgtgcactgcgtgctcagactgacaagagggagtatgcagtagagatgaagaaagttgttgaaagcacacaaaatcttttcattagagaggcaatggctacagaggttatgataggccagaacgacaatgttgagggtgtccgcactttcttcggcatggacttttatgcaccatctgttgtacttaccactggaacattcatgagtggtaagatttgggtaggtaggacttcaatgcctgccgggcgagctggagagtcagcttcacatggactcactgaaaacttgcagcagttgggttttgaaactgaccgcttaaaaactggcacaccaccacgaattgatcgcaggactgttaacttttctggattggaaccccagcatggtgatgaagaggttggctggtttagttttgatcctgaattccatattgagagggaccaaatgtgctgctatttaacaaggactacaaaagagacacatcaaattgttagagataacttggatgaaacaccaacttatggtggttgggtagaagcaaagggaccaagatactgtccagcaattgaagacaagattgtaaggttcaaagacaaagagtcccatcaggtatttcttgaaccagagggcagagatgttcctgagctttatctgcaggggttttccactgggcttcctgagcgattgcaattatcacttgtgagaacactaccgggactggagaattgtgtgatgctaaggccggcttatgctgttgaatatgattacttgccagcttaccagtgctcaagatcacttatgaccaagaagtttgagggcttattcttctctggccagattaacggaacaacaggatatgaagaagctgcagctcagggtataatttccggaataaatgcagctaggcattctgatggaaagccacttatcattcttgagagagaaagcagttatattgggactctgattgatgatcttgtcacaaaagatcttagggagccttatcgcatccgttcagaacaccgtctattgcttcgagctgataatgctgatagtcggttgactcctttgggacgagatattggtttgatagatgatagacgatgggagctttatcaatcaaagcaagcccggattaaagaggaaaaagaacgattgaaatctacaaaaatcccaggaggtgaatttgctgctgcggttacctctgtatccaaccaacctgtaaaagaatcatctacacttgaagccatactgaagaagccacatgtacagtataaacttcttgacaaacatggatatggaaatgaacatttgtctcgaattgagaaagaatgtgtggagattgatattaagtacgaaggttttatagcacggcagcaaagtcaattgcagcagattgtaaatcaggagcacaagaagcttcctgaagacttagattatcattcaatgacaaacctgtcacttgaagctcgtgagaaactttcaaaggtaaggccacaaacaataggccaggctagcagaattggcggggtgagcccagctgatatgactgttcttctcatttggatggagagcaaccgtcgcatggctaactacaagagacagcaaagcacgttgagatctgctgcgaccaaggcagatgattcttcagacgaagtggttcatgccagtgccaccaatgcataa
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| Protein seq | MLLRLRPPPQPAASLASFLPFSPFRRFLHSPSWRPPPPPPPRRRRLLSTAVASSSSSSKGSTSLEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIREAMATEVMIGQNDNVEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQQLGFETDRLKTGTPPRIDRRTVNFSGLEPQHGDEEVGWFSFDPEFHIERDQMCCYLTRTTKETHQIVRDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLEPEGRDVPELYLQGFSTGLPERLQLSLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLMTKKFEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIILERESSYIGTLIDDLVTKDLREPYRIRSEHRLLLRADNADSRLTPLGRDIGLIDDRRWELYQSKQARIKEEKERLKSTKIPGGEFAAAVTSVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSRIEKECVEIDIKYEGFIARQQSQLQQIVNQEHKKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQASRIGGVSPADMTVLLIWMESNRRMANYKRQQSTLRSAATKADDSSDEVVHASATNA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0046810 | OsLima_01g0046810.03 | Chr01 | 44061716 | 44068193 | - | IsoSeq | ||
| CDS seq | agcctcatcctgagccacagcgagccgcgaaaaattccgccgccgccgtttcgtcgacctcatcggcggccatgctgctccgcctccgtccgccgccgcagccggccgccagcctcgcatccttcctccccttctcccccttcaggcgcttcctccactcgccgtcctggcgccctcctcctcctcctcctccgcgccgccgccgcctcctctccactgccgtcgcctcctcctcctcctcctccaaaggctcgacaagtcttgaggagcgatacg
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| Protein seq | SLILSHSEPRKIPPPPFRRPHRRPCCSASVRRRSRPPASHPSSPSPPSGASSTRRPGALLLLLLRAAAASSPLPSPPPPPPPKARQVLRSDT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 44063707 | 44064339 | - | OsLima_01g0046810.03 | OsLima_01g0046810.03,OsLima_01g0046810.01,OsLima_01g0046810.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.512183 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0960300 | RBH | 4.906992 | 3.853987 | 1.728991 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72980 | RBH | 2.686956 | 2.552969 | 0.438352 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0960300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047800 | RBH | 2.148098 | 0.964404 | 4.677875 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047290 | RBH | 1.069664 | 1.617151 | 3.585990 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047790 | RBH | 2.309007 | 3.277412 | 10.229774 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047170 | RBH | 0.449532 | 0.147960 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046720 | RBH | 15.767239 | 6.298036 | 15.804814 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0694200 | RBH | 17.1602235 | 32.512539 | 13.5775745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046220 | RBH | 1.321945 | 1.059605 | 3.238455 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046650 | RBH | 2.259915 | 1.110272 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046980 | RBH | 6.668029 | 11.587438 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046970 | RBH | 0.000000 | 0.000000 | 1.457666 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046720 | RBH | 0.974361 | 0.748585 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047000 | RBH | 1.234171 | 0.649421 | 1.863119 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046750 | RBH | 4.948709 | 5.494466 | 5.374950 |
