Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0046230 | OGI:01122890 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:43632222-43639161 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtgggaaaattagttaaaatgcataatctaaaatcgatgcgcttgcgtatgcatttacatttgacaaattagctttcttccactaagcatttacattacttcttaagcactctactttgcacacaagggggggaaaaggagggggagcgagggagaaaccgtaaaactgagatgccgcctttctttctctttttctttttctctttcttacatagcgagaatctcctcttttatgggggccaggttagcaaccgaacagagagcgccttcacatcgtaaaggatctcagctctccttttgtccaaatgtcaaatctaatgtcaccgagatgcaatctcattatcgatactggaggctgatttttcaaccatccgaacattgtaatgctggtatacccttgtcctgttctcctgccaccattgttctgcctgggtctcgctgaatctcttccggctggattcatacaaaccaagagtgaaaagctgaaccaaacaaaactttgattcttgcacaggattaacaggatatacctgaaccgaacccgcttgagatctctcgcacctccaggcaaggcggttagagtgatgtaaacgcctggttcgtcttgctccacccattcagcctcatggcatgattctgcttcaggcagtctactaccatttttgccaacttctggatgacctgccttgattctaacagaacttggtccattagaagcaagcagcccattaggaccatttgaaatttgttctcctacactgcttgggctacccaaactttctgtagccatggatgatagctcacttggcataggaaatccagataggggcggcattttgctattcttggttactcctccaggcaatctctctgccattcccttcaactattataaaagcgagtggaaactatattacacaaaatatcacatgaatggcataaatagatgtcaatagagacttgggttatggaacatggtggcgtttgatgtattttaaattgttgagaccatttgatctgccattgtaccaaactgctaaactaggtaacttactgtttgatatggggttggttcttacttattcatgcataacaaggggaacaaaacggcaagctcacaaaaatgcaatcttacttgtgccgtgagtgatttgattacttcttttgcagccttgcacttggcagtttcctccccagcaattacaattgcttccttcaattgtttcgtagttctctccagctcaacttccagaagatgagacttcctagtaagattctccacctgcaagtggagaggtttactatatcagcaatcagatcctcactgttcaatagggacttgggtaaaaccagatagaactcaaaatgttgatatttggtcaaatgataatgcacttaatgactagcttgtacgtttttactgttagaacacaaggaagtgcagacatccgttttacagatttcaaagtggtaataggaatagaatgcacatattttgtaatgctatcgcgtcaaaaattttgtaatgctatctgttagttttacaagccaacagctttacgtgattactaagctaatttcatctgctgactcgttgtgctggaaatccagaaaattaacaactacaatcctaaaaagcaaacggtagaaatcatcaaattgctacaaaaaaacagtggataaaacagaaaaatgcaacagaatgtatacctgggacctcaaattcaagacctcgtggcttagactatcatttgtaggcttggcatcattggcaataactctaggagaagttagaccacccaaagtaggcgttggggttgtcgatctaggagggcttgttcttcttgagacaggtgatgttgccctagaaacaattcttgatccaggaacagatgctgaaaaaaacttcattgaggatccaaatacaggattgaaggatcttgaaatattgagcccgctccagtgtgaactgccatttggaacaggggaaacacgagtgctgttgaattcaaactttttgtttttcttcgaatatctactgtccatgttcttaaaagattccatagaagacaatctcgacagttgggtatttgaccgtgtttccagctcctcctcattagtttcactgaatccctgtacaacagtgcctcgcttagttgaggagtttgtgtctgtttcaagccccttagtgagtttgctgtagcaactatcacagacgcggtaaggcttgttcgggtttggcgccaatgaagccttcaaagattttttactgctgcatgaatgacaaaatactagagcacaattgtagcaattatgacgttttctcctcaagttaaacggctgacggcatccagagcacattgactgatcacttccagatacccatttatgaatgcatattgctgcagtgaagttaattccacacacaacacttctgacttgcttatctttcaatgcttcaaccaatgtaggagtattcttatcatcagtatcaccatgacctaaccgaccatttgcacctttaccccacgtgtacacctcagtcctggatgtcaatacagccacatgataagcaccacaagaaatttcttctacaaagtttttgtgcagcttcccttcaacacgtacaggaagcaaaccatctgcttgtggatttccaagctgaccatagacagcactacccattgtatatacatgccctgaggttgtaagagccactgtcaagcaatgcccacaagcaacttgacaaaaattgggctccaccaaagcagccacacatgttgggacaaatcttgagtccttgtcaccatgtcctaaacggcctttatctccatcaccccaagtaaatatcttgccagatgaacaattgctagaacttgaattcccaaccatgacttctacaacagcagcagtgtgccaaacaccacaagctgcccgaaccgttcgtagaccttttagggattctacttccctggggactgaaagacttgcacgatctccatgccctagaacaccaaaagatccatctccaaatgtgaacagctggccagcagaagttactagggccgtatgccaagggccacaagaaattgatgatacatgtataccctctaatggcccatcaacccTttttggtacccagtgactgacatcatttccatgacccaaaagcccaaatttaaaggtgccatccccccatgtatacagatctccagatagtgtaacagcacaggtatggtattcaccgcatgctaccagctctatgttcatgtgagcaagagaatcaatgagttttggttgtgccacatcacaatctacaccatgcccaagccggccacctgattcctcaccccaagagtagatctccccttgtttagtgaccaatgcagcatgccttcctccacaagatatattctgcacatcaagtcgcacagcgaactctaatggttttggtacaagataatccatctttgcactagaagagcttccaacccttgaactaccaccaccgagaattccttccccagttccttctccccatatgaaaacgtcacctaaagcatccccatcatcatgacctgaaccatgacttgacgaactgatagcacttgaataactgacccgaaaagcatccattgggatgcctcttgggtgaccatttgtgttatctgagtgtccagacgacatagagtggactgatccggcattagaatctgatgggaagaagcccttgggaggaactgcatataacacaacgtcagaaaaggccttatccaatgcattctttggtggactcccaaatggactccggagtcggtaatgatcactgccatcctgatgtaaaataactgtcagaaatcactttatgaattggtgttaaaaatagtgtcgtatcaaatggaatagcatatgattcaacatgatgagaaggaaggtcataaaaataattaaaacttgtatactcccttatgtttaactattgctcatgtcaatgaaatgaaaacacacataacaatacttgaccacgcgtgagatattatttagcttaaactataatactacaggtagagcactcaggaccacagacagatgttggcatgactttgaacaagagatgagacatgagcaaagtggaaagatgatggaatacaagagtagatcattcatattcaagagatgatggatagcaaataccttatggacactgtcattgctactgaagggagaactcaatggagaactccgacgtgtataagtccttggactagttgcaccagaggatatgatatcacttctcgattctgttctccattttctttgatggctacgtgaaatcaatgttttcagcccagcaaaccacacttctgcctcatctttatctttacaaatctgaaattattaaggaaaacatatttccatgtaaagaagagactccatacaagtcaaaagcaaaagaaagtaatgcaggttacatcaaagtttgaaagagatcgacaaagataaacatgaaatgtgaaccatgaagaacttacgatgtccaatgatctatcatgtgaaatcagagaaaacgactggcattccttctcaggtcgtggatacctctgaaaaattgcctagatttatcccaaaaaatgatttctagtcagtaagttgtgtgccaacatcagattagaaatacctgtaaccaaactcatcagaacattcattaaaaatgggaggcgatcatacggtcaaaccatcacatgacagtttggagtgatgctaatagcttcctcagtagattggtcagattagacaatgaaccaatttattcaaatacagatttaaggctaccagtgatttgaaccaattgcataaaccggaatcactattccacttaatgatactaggttagtaggtttagtgccaatatattatagacacgtctttcaaaaaaaaaatatacatattatagaaacttaaacaagtaagaacttgcagagacactagtaaagtttgccgtagtttagtttaccacagagaaaacaaaagaatgatgcaagaggctgaaggaaacataaacagcaagaatataaatatcaaacttctcttgtaattatgtttgttaatcagaatagtttgtcataatgggcaagcatagttaaacaggatcaccttgtagcaggagcagatccacagtataattactggtgtcggatgacacctatgacttttgctaattacactaccaaatattcttaggaactaataaatcactcttatacttaggcattttcaccatgatatgtgaaaagagtgacctcaatgacatttttttagatccacccctgccttgtaaaattctggatagtttttaggagtgttaacttacagtccgttgcccaggaactatcctggacacttggctcaaccttagatgtttctcctctttccctgagaaccatatcagtacagattcgtcctgaaggaatacaaaaggacaccttaaaagtgagaaaatcacatagaagttcagaaaaaaaaaaacttaacgggtgggaaagtaaaaactcacattggataacctaaatggacagaactttggttttcccctacgtccatacttcaataagtaagctcctttcttaagggcggtgatagcctgcagaaagtcgaattaatcaaaagaggctagtgatcatcaggagaatgcaaccttcagatgccatgacacaagggaaagtaatataggcatagaacaccagtcactaaatgtttcgaaggctgagtatctttcataacaaatcaaacaataaagaaatgtgatcttccgctaactataggcattcggtcattaattataaaaataatgaactgaatagagtaatttctatgccgtgtcgcggtattggttcaatcttgaacagaaaccgtcctgctttcacccccacttcccattttatcttgttgaacaggttttacctcaactagaatacaaagtagcagaaaagaacacaaaatcaacggcatttcagctgaacaatccactcatctcagcgacaaaagagcagacagaggattatacgggcaaaataagcatctcctatccatttgactgacaacctccttcgaaatctacaggagttcaatccacagcagcattaagactttatatgcactcagtctctcgacaattttaacaagtcataaaaatcctattatagccccatcagaatttccgaaattcaggtccactttaccaactacatcagaatggacaatcatttagcaaatgcccaacagccctgaggacaagccaagcatctgtaactgaaaaacaacacgaactcctgacgctccaagactaattcgaaactgaactcccttcaggctcccaactccagaaaatgtacaaaggactaactccaattagacctcaaatgcatactactaaaactccagaatccagatagacgatatcaggttaatcatttctccggctcccggaatctcacgagagcaagagcaagccgtcgctcccaattcaattcaactagaaatcccagctcaattcaaatactagaaaaccaactggaacacggtcaaatagcttctatctagctccgcgaattcgggcaccatttcacccccaaggcccaatcggcacgaactgacgaatccagcaaccaattcggcacagcacatgagcacagagacccaagcagaagcatgtggtgtggagtactactctctctctctcttcctcagagttgcaccccacgagaaaccaaaaaaaaaaaacaaactaaaagaaaaacaagtacgggaaaaccgattcactgagatgtcgtgcaaatgggggagtggcggcgaggcggcagcagcaccgcacctgctcgatgtcgcgctccacgggggggcccgcccgaccgccggcgagatccgacgacgcgtccgacat
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| CDS seq | atgtcggacgcgtcgtcggatctcgccggcggtcgggcgggcccccccgtggagcgcgacatcgagcaggctatcaccgcccttaagaaaggagcttacttattgaagtatggacgtaggggaaaaccaaagttctgtccatttaggttatccaatgacgaatctgtactgatatggttctcagggaaagaggagaaacatctaaggttgagccaagcaatttttcagaggtatccacgacctgagaaggaatgccagtcgttttctctgatttcacatgatagatcattggacatcgtaagttcttcatggttcacatttcatgtttatctttgtcgatctctttcaaactttgatatttgtaaagataaagatgaggcagaagtgtggtttgctgggctgaaaacattgatttcacgtagccatcaaagaaaatggagaacagaatcgagaagtgatatcatatcctctggtgcaactagtccaaggacttatacacgtcggagttctccattgagttctcccttcagtagcaatgacagtgtccataaggatggcagtgatcattaccgactccggagtccatttgggagtccaccaaagaatgcattggataaggccttttctgacgttgtgttatatgcagttcctcccaagggcttcttcccatcagattctaatgccggatcagtccactctatgtcgtctggacactcagataacacaaatggtcacccaagaggcatcccaatggatgcttttcgggtcagttattcaagtgctatcagttcgtcaagtcatggttcaggtcatgatgatggggatgctttaggtgacgttttcatatggggagaaggaactggggaaggaattctcggtggtggtagttcaagggttggaagctcttctagtgcaaagatggattatcttgtaccaaaaccattagagttcgctgtgcgacttgatgtgcagaatatatcttgtggaggaaggcatgctgcattggtcactaaacaaggggagatctactcttggggtgaggaatcaggtggccggcttgggcatggtgtagattgtgatgtggcacaaccaaaactcattgattctcttgctcacatgaacatagagctggtagcatgcggtgaataccatacctgtgctgttacactatctggagatctgtatacatggggggatggcacctttaaatttgggcttttgggtcatggaaatgatgtcagtcactgggtaccaaaaAgggttgatgggccattagagggtatacatgtatcatcaatttcttgtggcccttggcatacggccctagtaacttctgctggccagctgttcacatttggagatggatcttttggtgttctagggcatggagatcgtgcaagtctttcagtccccagggaagtagaatccctaaaaggtctacgaacggttcgggcagcttgtggtgtttggcacactgctgctgttgtagaagtcatggttgggaattcaagttctagcaattgttcatctggcaagatatttacttggggtgatggagataaaggccgtttaggacatggtgacaaggactcaagatttgtcccaacatgtgtggctgctttggtggagcccaatttttgtcaagttgcttgtgggcattgcttgacagtggctcttacaacctcagggcatgtatatacaatgggtagtgctgtctatggtcagcttggaaatccacaagcagatggtttgcttcctgtacgtgttgaagggaagctgcacaaaaactttgtagaagaaatttcttgtggtgcttatcatgtggctgtattgacatccaggactgaggtgtacacgtggggtaaaggtgcaaatggtcggttaggtcatggtgatactgatgataagaatactcctacattggttgaagcattgaaagataagcaagtcagaagtgttgtgtgtggaattaacttcactgcagcaatatgcattcataaatgggtatctggaagtgatcagtcaatgtgctctggatgccgtcagccgtttaacttgaggagaaaacgtcataattgctacaattgtgctctagtattttgtcattcatgcagcagtaaaaaatctttgaaggcttcattggcgccaaacccgaacaagccttaccgcgtctgtgatagttgctacagcaaactcactaaggggcttgaaacagacacaaactcctcaactaagcgaggcactgttgtacagggattcagtgaaactaatgaggaggagctggaaacacggtcaaatacccaactgtcgagattgtcttctatggaatcttttaagaacatggacagtagatattcgaagaaaaacaaaaagtttgaattcaacagcactcgtgtttcccctgttccaaatggcagttcacactggagcgggctcaatatttcaagatccttcaatcctgtatttggatcctcaatgaagtttttttcagcatctgttcctggatcaagaattgtttctagggcaacatcacctgtctcaagaagaacaagccctcctagatcgacaaccccaacgcctactttgggtggtctaacttctcctagagttattgccaatgatgccaagcctacaaatgatagtctaagccacgaggtcttgaatttgaggtcccaggtggagaatcttactaggaagtctcatcttctggaagttgagctggagagaactacgaaacaattgaaggaagcaattgtaattgctggggaggaaactgccaagtgcaaggctgcaaaagaagtaatcaaatcactcacggcacaattgaagggaatggcagagagattgcctggaggagtaaccaagaatagcaaaatgccgcccctatctggatttcctatgccaagtgagctatcatccatggctacagaaagtttgggtagcccaagcagtgtaggagaacaaatttcaaatggtcctaatgggctgcttgcttctaatggaccaagttctgttagaatcaaggcaggtcatccagaagttggcaaaaatggtagtagactgcctgaagcagaatcatgccatgaggctgaatgggtggagcaagacgaaccaggcgtttacatcactctaaccgccttgcctggaggtgcgagagatctcaagcgggttcggttcaggtatatcctgttaatcctgtgcaagaatcaaagttttgtttggttcagcttttcactcttggtttgtatgaatccagccggaagagattcagcgagacccaggcagaacaatggtggcaggagaacaggacaagggtataccagcattacaatgttcggatggttgaaaaatcagcctccagtatcgataatgagattgcatctcggtgacattagatttgacatttggacaaaaggagagctgagatcctttacgatgtga
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| Protein seq | MSDASSDLAGGRAGPPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLRLSQAIFQRYPRPEKECQSFSLISHDRSLDIVSSSWFTFHVYLCRSLSNFDICKDKDEAEVWFAGLKTLISRSHQRKWRTESRSDIISSGATSPRTYTRRSSPLSSPFSSNDSVHKDGSDHYRLRSPFGSPPKNALDKAFSDVVLYAVPPKGFFPSDSNAGSVHSMSSGHSDNTNGHPRGIPMDAFRVSYSSAISSSSHGSGHDDGDALGDVFIWGEGTGEGILGGGSSRVGSSSSAKMDYLVPKPLEFAVRLDVQNISCGGRHAALVTKQGEIYSWGEESGGRLGHGVDCDVAQPKLIDSLAHMNIELVACGEYHTCAVTLSGDLYTWGDGTFKFGLLGHGNDVSHWVPKRVDGPLEGIHVSSISCGPWHTALVTSAGQLFTFGDGSFGVLGHGDRASLSVPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDSRFVPTCVAALVEPNFCQVACGHCLTVALTTSGHVYTMGSAVYGQLGNPQADGLLPVRVEGKLHKNFVEEISCGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDKNTPTLVEALKDKQVRSVVCGINFTAAICIHKWVSGSDQSMCSGCRQPFNLRRKRHNCYNCALVFCHSCSSKKSLKASLAPNPNKPYRVCDSCYSKLTKGLETDTNSSTKRGTVVQGFSETNEEELETRSNTQLSRLSSMESFKNMDSRYSKKNKKFEFNSTRVSPVPNGSSHWSGLNISRSFNPVFGSSMKFFSASVPGSRIVSRATSPVSRRTSPPRSTTPTPTLGGLTSPRVIANDAKPTNDSLSHEVLNLRSQVENLTRKSHLLEVELERTTKQLKEAIVIAGEETAKCKAAKEVIKSLTAQLKGMAERLPGGVTKNSKMPPLSGFPMPSELSSMATESLGSPSSVGEQISNGPNGLLASNGPSSVRIKAGHPEVGKNGSRLPEAESCHEAEWVEQDEPGVYITLTALPGGARDLKRVRFRYILLILCKNQSFVWFSFSLLVCMNPAGRDSARPRQNNGGRRTGQGYTSITMFGWLKNQPPVSIMRLHLGDIRFDIWTKGELRSFTM |
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| Function | PH, RCC1 and FYVE domains-containing protein 1 [UniProtKB/Swiss-Prot:Q947D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0046230 | OsLima_01g0046230.01 | Chr01 | 43632490 | 43639161 | - | NAM | ||
| CDS seq | atgtcggacgcgtcgtcggatctcgccggcggtcgggcgggcccccccgtggagcgcgacatcgagcaggctatcaccgcccttaagaaaggagcttacttattgaagtatggacgtaggggaaaaccaaagttctgtccatttaggttatccaatgacgaatctgtactgatatggttctcagggaaagaggagaaacatctaaggttgagccaagcaatttttcagaggtatccacgacctgagaaggaatgccagtcgttttctctgatttcacatgatagatcattggacatcgtaagttcttcatggttcacatttcatgtttatctttgtcgatctctttcaaactttgatatttgtaaagataaagatgaggcagaagtgtggtttgctgggctgaaaacattgatttcacgtagccatcaaagaaaatggagaacagaatcgagaagtgatatcatatcctctggtgcaactagtccaaggacttatacacgtcggagttctccattgagttctcccttcagtagcaatgacagtgtccataaggatggcagtgatcattaccgactccggagtccatttgggagtccaccaaagaatgcattggataaggccttttctgacgttgtgttatatgcagttcctcccaagggcttcttcccatcagattctaatgccggatcagtccactctatgtcgtctggacactcagataacacaaatggtcacccaagaggcatcccaatggatgcttttcgggtcagttattcaagtgctatcagttcgtcaagtcatggttcaggtcatgatgatggggatgctttaggtgacgttttcatatggggagaaggaactggggaaggaattctcggtggtggtagttcaagggttggaagctcttctagtgcaaagatggattatcttgtaccaaaaccattagagttcgctgtgcgacttgatgtgcagaatatatcttgtggaggaaggcatgctgcattggtcactaaacaaggggagatctactcttggggtgaggaatcaggtggccggcttgggcatggtgtagattgtgatgtggcacaaccaaaactcattgattctcttgctcacatgaacatagagctggtagcatgcggtgaataccatacctgtgctgttacactatctggagatctgtatacatggggggatggcacctttaaatttgggcttttgggtcatggaaatgatgtcagtcactgggtaccaaaaAgggttgatgggccattagagggtatacatgtatcatcaatttcttgtggcccttggcatacggccctagtaacttctgctggccagctgttcacatttggagatggatcttttggtgttctagggcatggagatcgtgcaagtctttcagtccccagggaagtagaatccctaaaaggtctacgaacggttcgggcagcttgtggtgtttggcacactgctgctgttgtagaagtcatggttgggaattcaagttctagcaattgttcatctggcaagatatttacttggggtgatggagataaaggccgtttaggacatggtgacaaggactcaagatttgtcccaacatgtgtggctgctttggtggagcccaatttttgtcaagttgcttgtgggcattgcttgacagtggctcttacaacctcagggcatgtatatacaatgggtagtgctgtctatggtcagcttggaaatccacaagcagatggtttgcttcctgtacgtgttgaagggaagctgcacaaaaactttgtagaagaaatttcttgtggtgcttatcatgtggctgtattgacatccaggactgaggtgtacacgtggggtaaaggtgcaaatggtcggttaggtcatggtgatactgatgataagaatactcctacattggttgaagcattgaaagataagcaagtcagaagtgttgtgtgtggaattaacttcactgcagcaatatgcattcataaatgggtatctggaagtgatcagtcaatgtgctctggatgccgtcagccgtttaacttgaggagaaaacgtcataattgctacaattgtgctctagtattttgtcattcatgcagcagtaaaaaatctttgaaggcttcattggcgccaaacccgaacaagccttaccgcgtctgtgatagttgctacagcaaactcactaaggggcttgaaacagacacaaactcctcaactaagcgaggcactgttgtacagggattcagtgaaactaatgaggaggagctggaaacacggtcaaatacccaactgtcgagattgtcttctatggaatcttttaagaacatggacagtagatattcgaagaaaaacaaaaagtttgaattcaacagcactcgtgtttcccctgttccaaatggcagttcacactggagcgggctcaatatttcaagatccttcaatcctgtatttggatcctcaatgaagtttttttcagcatctgttcctggatcaagaattgtttctagggcaacatcacctgtctcaagaagaacaagccctcctagatcgacaaccccaacgcctactttgggtggtctaacttctcctagagttattgccaatgatgccaagcctacaaatgatagtctaagccacgaggtcttgaatttgaggtcccaggtggagaatcttactaggaagtctcatcttctggaagttgagctggagagaactacgaaacaattgaaggaagcaattgtaattgctggggaggaaactgccaagtgcaaggctgcaaaagaagtaatcaaatcactcacggcacaattgaagggaatggcagagagattgcctggaggagtaaccaagaatagcaaaatgccgcccctatctggatttcctatgccaagtgagctatcatccatggctacagaaagtttgggtagcccaagcagtgtaggagaacaaatttcaaatggtcctaatgggctgcttgcttctaatggaccaagttctgttagaatcaaggcaggtcatccagaagttggcaaaaatggtagtagactgcctgaagcagaatcatgccatgaggctgaatgggtggagcaagacgaaccaggcgtttacatcactctaaccgccttgcctggaggtgcgagagatctcaagcgggttcggttcaggtatatcctgttaatcctgtgcaagaatcaaagttttgtttggttcagcttttcactcttggtttgtatgaatccagccggaagagattcagcgagacccaggcagaacaatggtggcaggagaacaggacaagggtataccagcattacaatgttcggatggttgaaaaatcagcctccagtatcgataatgagattgcatctcggtgacattagatttgacatttggacaaaaggagagctgagatcctttacgatgtga
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| Protein seq | MSDASSDLAGGRAGPPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLRLSQAIFQRYPRPEKECQSFSLISHDRSLDIVSSSWFTFHVYLCRSLSNFDICKDKDEAEVWFAGLKTLISRSHQRKWRTESRSDIISSGATSPRTYTRRSSPLSSPFSSNDSVHKDGSDHYRLRSPFGSPPKNALDKAFSDVVLYAVPPKGFFPSDSNAGSVHSMSSGHSDNTNGHPRGIPMDAFRVSYSSAISSSSHGSGHDDGDALGDVFIWGEGTGEGILGGGSSRVGSSSSAKMDYLVPKPLEFAVRLDVQNISCGGRHAALVTKQGEIYSWGEESGGRLGHGVDCDVAQPKLIDSLAHMNIELVACGEYHTCAVTLSGDLYTWGDGTFKFGLLGHGNDVSHWVPKRVDGPLEGIHVSSISCGPWHTALVTSAGQLFTFGDGSFGVLGHGDRASLSVPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDSRFVPTCVAALVEPNFCQVACGHCLTVALTTSGHVYTMGSAVYGQLGNPQADGLLPVRVEGKLHKNFVEEISCGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDKNTPTLVEALKDKQVRSVVCGINFTAAICIHKWVSGSDQSMCSGCRQPFNLRRKRHNCYNCALVFCHSCSSKKSLKASLAPNPNKPYRVCDSCYSKLTKGLETDTNSSTKRGTVVQGFSETNEEELETRSNTQLSRLSSMESFKNMDSRYSKKNKKFEFNSTRVSPVPNGSSHWSGLNISRSFNPVFGSSMKFFSASVPGSRIVSRATSPVSRRTSPPRSTTPTPTLGGLTSPRVIANDAKPTNDSLSHEVLNLRSQVENLTRKSHLLEVELERTTKQLKEAIVIAGEETAKCKAAKEVIKSLTAQLKGMAERLPGGVTKNSKMPPLSGFPMPSELSSMATESLGSPSSVGEQISNGPNGLLASNGPSSVRIKAGHPEVGKNGSRLPEAESCHEAEWVEQDEPGVYITLTALPGGARDLKRVRFRYILLILCKNQSFVWFSFSLLVCMNPAGRDSARPRQNNGGRRTGQGYTSITMFGWLKNQPPVSIMRLHLGDIRFDIWTKGELRSFTM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0046230 | OsLima_01g0046230.02 | Chr01 | 43632222 | 43634285 | - | IsoSeq | ||
| CDS seq | atgggtggagcaagacgaaccaggcgtttacatcactctaaccgccttgcctggaggtgcgagagatctcaagcgggttcggttcagccggaagagattcagcgagacccaggcagaacaatggtggcaggagaacaggacaagggtataccagcattacaatgttcggat |
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| Protein seq | MGGARRTRRLHHSNRLAWRCERSQAGSVQPEEIQRDPGRTMVAGEQDKGIPALQCSD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.146218 | 0.305080 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0952300 | RBH | 1.248354 | 1.811599 | 7.800714 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72320 | RBH | 0.891349 | 1.297616 | 2.094269 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0952300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047230 | RBH | 0.695353 | 25.372143 | 7.276122 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046760 | RBH | 0.155985 | 3.328339 | 4.663757 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047190 | RBH | 1.333590 | 14.760985 | 17.202003 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046600 | RBH | 0.330333 | 0.379624 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046130 | RBH | 12.558123 | 36.021198 | 53.615448 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0686000 | RBH | 8.200872 | 19.69032 | 16.8747055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045640 | RBH | 0.668375 | 1.043799 | 2.231375 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0699500 | SBH | 8.3573235 | 13.390941 | 21.885638 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0015230 | RBH | 0.539590 | 0.341956 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046060 | RBH | 0.982095 | 34.337791 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046380 | RBH | 7.362096 | 25.280928 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046350 | RBH | 1.580322 | 8.430597 | 4.183646 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046140 | RBH | 0.635904 | 8.897161 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046400 | RBH | 0.431620 | 4.613942 | 6.328509 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046220 | RBH | 2.468668 | 30.173679 | 17.082409 |
