Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0045380 | OGI:01121160 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:42930481-42930815 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaccacagtccacaactgcatgtccatgagagtttttccttgcgattggcatgctccaccaatatgtcgcttgctttacccgtttgcccgccaaatagatttttagtggcacaatttgcatctctttgtttcttggcctgtagccTttttgcatcgacacctgatgtgcagtgcagtgtagacaattcagtgcttcctatatcgtctaaaggcaaaacacatcgattctgagaaagcattacgatttgcaagcatcatccctttgaagaaagaagtattgttgagaccatggcttggcacgcttggtggatggtgggtggcggccttcctggca |
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| CDS seq | atgatgcttgcaaatcacgatataggaagcactgaattgtctacactgcactgcacatcaggtgtcgatgcaaaaAggctacaggccaagaaacaaagagatgcaaattgtgccactaaaaatctatttggcgggcaaacgggtaaagcaagcgacatattggtggagcatgccaatcgcaaggaaaaactctcatggacatgcagttgtggactgtggtag |
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| Protein seq | MMLANHDIGSTELSTLHCTSGVDAKRLQAKKQRDANCATKNLFGGQTGKASDILVEHANRKEKLSWTCSCGLW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0045380 | OsLima_01g0045380.01 | Chr01 | 42930481 | 42930815 | - | NAM | ||
| CDS seq | atgatgcttgcaaatcacgatataggaagcactgaattgtctacactgcactgcacatcaggtgtcgatgcaaaaAggctacaggccaagaaacaaagagatgcaaattgtgccactaaaaatctatttggcgggcaaacgggtaaagcaagcgacatattggtggagcatgccaatcgcaaggaaaaactctcatggacatgcagttgtggactgtggtag
More
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| Protein seq | MMLANHDIGSTELSTLHCTSGVDAKRLQAKKQRDANCATKNLFGGQTGKASDILVEHANRKEKLSWTCSCGLW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046380 | RBH | 0.132912 | 6.317603 | 5.871472 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045810 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0677700 | SBH | 3.8162655 | 10.810249 | 5.856437 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0679600 | SBH | 4.4601645 | 10.7955275 | 6.9736705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045630 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045360 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045430 | RBH | 0.0 | 0.0 | 0.000000 |
