Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0045320 | OGI:01121160 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:42875479-42876752 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agcgagaattgtatccttattttgaaatttgaattatagtggcaagcagtgagctgattttagtttcttgcgaagttgaagttgccacaggtagtcctgatgaagaagagggtgccactgaaccctagccttgacgcggcctcgtcgaacagcaaaaagttgttctccatctggaacgcgcccacggtcaccgcgctccgcgccgcccacccgccgtcgacgaacgccaagcacgccgtgtcgcccgccgcctgcgccagcgagttcgacccgaacaccgtccagttccggccgccggacgtcatgaggtcgatcggcgccaccgcgtagcccaccctggtgaaccccagcgcgctgctgttgaagcagagcttgaacggggccacgctcggcacgcgcggtatcctcgccgtcgccttggagaacgcggcgacgaaggggcggtacacgtcgcgccgcaggacggtgtacggcgcggccgtgtcgagcgtcacgccgccgccgcggctgagcgcgccgggagggaggtggaccgcttcttggttcatggcgatgccccggagcttgatgctgtacgccgaggggttcgtcgggctccggaccaggtcggtgtaggagaggacggtgctcgcgtcgaacagcgtcggcggcatcaggttgtacggcccgccgccgaagaacgccacgcCgggcgcggccgccgtgctcggcaggcagacggcgaactgccgcttaagcgacagcttcgagtagagctgggtcggcaggctcaccccgccacggccgaggccagcgtcgccggctgccatggccggcaacgacctgaggaggctgcccggcgcgcatgacgagacgacgccccgaacggtgacctccgaggtcggcgtcttgccgtcggtggcgttggcgatgatgtcagtgagcgtgaggtcgccgacggcgcgttcgcccgtcaccggattcgtcgggcgggcggtgcacgtgcgtcctccgttgttgcagtacttgtgcgCccccgacgcggcggcgcactcgccggaggagcacgggacggtggggtgggagggtgagcatgagcacggcgaccatagtagctggccggagaggtcaagcaggtacttcttgttggagatggagagcgtgtggagcccagtcttggtgtcctTGgtgatcggagctaccaaggcttggattgcaggagatgaagaagcttgcacttgcacaacaaTgtagaggatgatagcgagaaaaaatgcttggaaattcatagccat
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| CDS seq | atggctatgaatttccaagcattttttctcgctatcatcctctacAttgttgtgcaagtgcaagcttcttcatctcctgcaatccaagccttggtagctccgatcacCAaggacaccaagactgggctccacacgctctccatctccaacaagaagtacctgcttgacctctccggccagctactatggtcgccgtgctcatgctcaccctcccaccccaccgtcccgtgctcctccggcgagtgcgccgccgcgtcggggGcgcacaagtactgcaacaacggaggacgcacgtgcaccgcccgcccgacgaatccggtgacgggcgaacgcgccgtcggcgacctcacgctcactgacatcatcgccaacgccaccgacggcaagacgccgacctcggaggtcaccgttcggggcgtcgtctcgtcatgcgcgccgggcagcctcctcaggtcgttgccggccatggcagccggcgacgctggcctcggccgtggcggggtgagcctgccgacccagctctactcgaagctgtcgcttaagcggcagttcgccgtctgcctgccgagcacggcggccgcgcccGgcgtggcgttcttcggcggcgggccgtacaacctgatgccgccgacgctgttcgacgcgagcaccgtcctctcctacaccgacctggtccggagcccgacgaacccctcggcgtacagcatcaagctccggggcatcgccatgaaccaagaagcggtccacctccctcccggcgcgctcagccgcggcggcggcgtgacgctcgacacggccgcgccgtacaccgtcctgcggcgcgacgtgtaccgccccttcgtcgccgcgttctccaaggcgacggcgaggataccgcgcgtgccgagcgtggccccgttcaagctctgcttcaacagcagcgcgctggggttcaccagggtgggctacgcggtggcgccgatcgacctcatgacgtccggcggccggaactggacggtgttcgggtcgaactcgctggcgcaggcggcgggcgacacggcgtgcttggcgttcgtcgacggcgggtgggcggcgcggagcgcggtgaccgtgggcgcgttccagatggagaacaactttttgctgttcgacgaggccgcgtcaaggctagggttcagtggcaccctcttcttcatcaggactacctgtggcaacttcaacttcgcaagaaactaa
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| Protein seq | MAMNFQAFFLAIILYIVVQVQASSSPAIQALVAPITKDTKTGLHTLSISNKKYLLDLSGQLLWSPCSCSPSHPTVPCSSGECAAASGAHKYCNNGGRTCTARPTNPVTGERAVGDLTLTDIIANATDGKTPTSEVTVRGVVSSCAPGSLLRSLPAMAAGDAGLGRGGVSLPTQLYSKLSLKRQFAVCLPSTAAAPGVAFFGGGPYNLMPPTLFDASTVLSYTDLVRSPTNPSAYSIKLRGIAMNQEAVHLPPGALSRGGGVTLDTAAPYTVLRRDVYRPFVAAFSKATARIPRVPSVAPFKLCFNSSALGFTRVGYAVAPIDLMTSGGRNWTVFGSNSLAQAAGDTACLAFVDGGWAARSAVTVGAFQMENNFLLFDEAASRLGFSGTLFFIRTTCGNFNFARN |
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| Function | Chitinase CLP [UniProtKB/Swiss-Prot:Q8S1V1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0045320 | OsLima_01g0045320.01 | Chr01 | 42875479 | 42876752 | - | NAM | ||
| CDS seq | atggctatgaatttccaagcattttttctcgctatcatcctctacAttgttgtgcaagtgcaagcttcttcatctcctgcaatccaagccttggtagctccgatcacCAaggacaccaagactgggctccacacgctctccatctccaacaagaagtacctgcttgacctctccggccagctactatggtcgccgtgctcatgctcaccctcccaccccaccgtcccgtgctcctccggcgagtgcgccgccgcgtcggggGcgcacaagtactgcaacaacggaggacgcacgtgcaccgcccgcccgacgaatccggtgacgggcgaacgcgccgtcggcgacctcacgctcactgacatcatcgccaacgccaccgacggcaagacgccgacctcggaggtcaccgttcggggcgtcgtctcgtcatgcgcgccgggcagcctcctcaggtcgttgccggccatggcagccggcgacgctggcctcggccgtggcggggtgagcctgccgacccagctctactcgaagctgtcgcttaagcggcagttcgccgtctgcctgccgagcacggcggccgcgcccGgcgtggcgttcttcggcggcgggccgtacaacctgatgccgccgacgctgttcgacgcgagcaccgtcctctcctacaccgacctggtccggagcccgacgaacccctcggcgtacagcatcaagctccggggcatcgccatgaaccaagaagcggtccacctccctcccggcgcgctcagccgcggcggcggcgtgacgctcgacacggccgcgccgtacaccgtcctgcggcgcgacgtgtaccgccccttcgtcgccgcgttctccaaggcgacggcgaggataccgcgcgtgccgagcgtggccccgttcaagctctgcttcaacagcagcgcgctggggttcaccagggtgggctacgcggtggcgccgatcgacctcatgacgtccggcggccggaactggacggtgttcgggtcgaactcgctggcgcaggcggcgggcgacacggcgtgcttggcgttcgtcgacggcgggtgggcggcgcggagcgcggtgaccgtgggcgcgttccagatggagaacaactttttgctgttcgacgaggccgcgtcaaggctagggttcagtggcaccctcttcttcatcaggactacctgtggcaacttcaacttcgcaagaaactaa
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| Protein seq | MAMNFQAFFLAIILYIVVQVQASSSPAIQALVAPITKDTKTGLHTLSISNKKYLLDLSGQLLWSPCSCSPSHPTVPCSSGECAAASGAHKYCNNGGRTCTARPTNPVTGERAVGDLTLTDIIANATDGKTPTSEVTVRGVVSSCAPGSLLRSLPAMAAGDAGLGRGGVSLPTQLYSKLSLKRQFAVCLPSTAAAPGVAFFGGGPYNLMPPTLFDASTVLSYTDLVRSPTNPSAYSIKLRGIAMNQEAVHLPPGALSRGGGVTLDTAAPYTVLRRDVYRPFVAAFSKATARIPRVPSVAPFKLCFNSSALGFTRVGYAVAPIDLMTSGGRNWTVFGSNSLAQAAGDTACLAFVDGGWAARSAVTVGAFQMENNFLLFDEAASRLGFSGTLFFIRTTCGNFNFARN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.065027 | 0.190120 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0937200 | RBH | 0.0 | 0.691088 | 0.547059 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71094 | RBH | 0.0 | 0.463839 | 0.140528 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0937200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046350 | RBH | 0.0 | 0.000000 | 1.162307 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045860 | RBH | 0.000000 | 1.315859 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046250 | RBH | 0.0 | 0.000000 | 0.258626 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045780 | RBH | 0.0 | 0.081983 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045360 | RBH | 0.517477 | 6.296195 | 3.110365 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0677500 | RBH | 1.1574795 | 22.944889 | 1.908075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044900 | RBH | 0.0 | 0.389283 | 0.132419 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0679400 | RBH | 1.3340915 | 12.6515895 | 3.644632 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045310 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045270 | RBH | 0.0 | 28.191097 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045580 | SBH | 0.0 | 2.019200 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045610 | RBH | 0.0 | 1.295265 | 0.160425 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045340 | RBH | 0.0 | 4.966807 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045680 | SBH | 0.0 | 1.770912 | 0.731330 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045400 | RBH | 0.000000 | 3.428408 | 0.000000 |
