Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0045230 | OGI:01120940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:42819710-42824079 | ||||||||
| Gene Symbol | RLCK55, OsRLCK55 | ||||||||||
| DNA seq | tcactctgccccagagctgacttttgcttcttactcctactactactacttgtctttctctttgcaccctagcctcatgttcttcttcttcctcctctcctccttcttgtagcttccacccccaccccactccctcccacccccgccgcccgcttaaaagtccgattttggggaggttcgtgcgctcagatcggggagggggtccaaccccccatttcgtcttgctgcggcggggagggtggtgaagcgaaagtttggatttttttttttttgggggggggaaggttctgcttggatgagctgcttcctgtgcttcggatcggcccaggagggggaggccaagaagcccggggctgactccaaggacgcgcgcaaggacggctccgcggatcgcggggtgtccagggtcggatcaggtgcgtggaggacaactggatcttggaattagttttcgcggcgttttgctgcggctttcagatgttcttttttttctttccttctgctgccttgtggcgctgtggttttcctgttcatgttgtgtttgtactgctttgctgtgagcgaacgatgatttggtgatttaagttagacaaatgtgcagggttgctgtcgtgttagtaagcttggaggctgtatttaggctcaggcacgctttcttcttcatttagagaggaaaaataggggaatgcattgtttgccatagtttgtggctaggatggctaggttttattaagaaaatctgtatcgtcctggcaaatttaggagattcatgaatagatagtgttgattttgatggtttgtcttgtttagatgtgtgggtaaaggctcaggatcattttgaagttgtcttaggctggatagtatatttgtgtgggaacaatgggggtggaaagtgatggatgtgttgtttactagtccttgaactcgatactgtttatgaatatacaaatatgtaggtgtcatttcattttgtttttttgagtatacgaattgcgggtatgttggccatcgtacctgtccagtttggcagctggttcatctttggcatgttgcaaattatctgtaaggacctggggttgacatgatataataaggattgattttagtgacctaggacagttcattgtggatcttttcttcatgaaactgattgggggagggattattggaagtacatgctttgtctttacgttattctgtttatgctttgagtattgcttcacaaatggatcggtgaaatctgcttcgttggcttctatcgagtagtaaagtgtactaaatacagtactttaaatgactgatttagttttatgtttctgctgataagagtgttaatgctcagaggatagcacactaccattactctgcccctcaaaaagaaaaaagaaccgattactaactctacaacattttcttcttagataaatcgaggtcacatggtggattagactctaagaaggacgttgtcatccaaagagatgggaacaaccaaaatattgctgcacagacgttcacttttcgtgagcttgctgccgccaccaagaacttcagacaagattgcctattgggagagggaggttttggccgtgtatataaaggacgcctggagactgggcaggtcagtctttcttaacctatctagatctattgagattttactaaatacttgaagtttaggttttcagtgatttagttaatattcagtaaaatgttggcagaattgctgttttgctttatccctggagcactaatgaaatataccacttcccaggttgttgctgtgaagcaacttgatcgcaatggtcttcaaggaaatagagaattcctggttgaggtcctcatgctcagtcttctacatcacactaacctggtcaatctaattggctattgtgctgatggtgaccagcgccttcttgtctatgagtttatgccattgggatcactggaagaccatttgcatggtttgtctatcttctccttgcctttctagtcttgcaagagtccatgggcgcttgaagcaatgtacataaagtagtagtactgcattattgtgaagtactatacttggtagttagtacagctgtttaatggcatcctgttatgtttaaagttcaatggcagcttcaaatgaagataaaaggttttccaatttctgttttgtagatttgccacctgataaggaacctcttgactggaacacacggatgaagatagctgcaggtgcagccaagggcttagaatacctacatgacaaggcgagcccgccagttatttatcgtgacttcaaatcatcaaacattcttcttggtgaaggatttcaccccaagctgtctgattttggtcttgcaaaacttggtccagttggtgacaagacccatgtttcaacacgtgtgatgggaacttatggctactgtgccccagaatatgcaatgactgggcagctcacagtgaaatccgatgtctatagctttggtgttgttttcctcgaactgattacagggcgcaaagcaattgacaacacaaagccacagggggagcaaaacctagtggcatgggtatgtttttatactatacttgcatcataaatgcataataaatatatgccagtgacacccattgtatgcattcttcttttgaaaataaaagcattacatgtatctcagcattttattttagtactgttagtgaaatacaatcccgccaatcaaactgatgccacccacctgttcctttacaatcacacaacaaataattgtagtgtttatgctagctcatgaacaatttgatcatggatggcctttacttccaagtgtccaaattgtttccttgtggccaggaaaagttgttgttttgataccgatatttgccatccaccttggtaattttgctgatggctgcaaacatttagcaattttgagagtatggggggcattatagttcagctgttccattctcttacaaatgatgttctgttgctcgctcaaaatttgtaaatgaaaccagtttctaatgcaatcttaattgaaaaaaaaacttcgtggacatttttattttggataatcaatacatttcatctgtttgcaggctcgtccactattcaaggaccgcaggaagttccctaaaatggctgatccaatgctccaaggtcgcttccctatgaggggtctgtatcaggctttagctgttgctgccatgtgtttacaagagcaagctaccactcgccctcatataggagatgttgtcactgcactctcatatctagcttctcagacatatgatccaaatgcccctgttcaacatagcaggagcaattcgtcaactcctagggccagaaatctagctgggtggaatgaagatcgacgcagtgtgcgctcgccgaatcatcattctccagatctgaggagggaagctgccaggtcatcaagagcagaggttagcaggactagttctaccggtgattctggccggagatcaggattggatgatttagacatgacagggtcgcagatgggtagtccagctcaaacaggaagaaaaagagagactccaaggactgctgatagacagcgtgctattgcagaggccaaaacgtggggggagaattctcgagaacggaagcatccgaatggtcatggcagctttgatagtacaaatgagtaaatcggacggtttttgtttcagaaatcagtctacggaggatgaatctgctcatctacacgaaacggatccaatcaagtaacattgcattggttccacacggttctttatctgtgaataagacccttgttcttccccggccatcagtgtcactccatggtcactatgtcattgctatttgacatgtcttagatctcccggcgtccattccttgtgaatgtgattgtgtcatgtgtctttagagttcgggtccgttcgggagccgataaaattcagctggaaaggtaggcaacagaagagaggaacctgatgaatgccttttcttggttacctgatcgccatgctcatgctcagcaccacctgtgttacgaatgttacaacatttcaggtttggctacctgaggacgtgaagttacttccgatgagaattcaggtttggagataggacacattacctgtgtttcgtacagttttttcttttcttttcttttcttttgagttgcctgagcacttatttatttgtattagcttactgtacctctcatgtatcttagcgtgaacgttgttcgacatgcagcaagaggtttttatctgtatcaagctatttcagagccaatgtgttgtacatgtaatattttgcagtagtagtcaatcatgtgttcatcttgcaaagccaaatgagctgtatcaaaccaaatctgattggtgtggca
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| CDS seq | atgagctgcttcctgtgcttcggatcggcccaggagggggaggccaagaagcccggggctgactccaaggacgcgcgcaaggacggctccgcggatcgcggggtgtccagggtcggatcagataaatcgaggtcacatggtggattagactctaagaaggacgttgtcatccaaagagatgggaacaaccaaaatattgctgcacagacgttcacttttcgtgagcttgctgccgccaccaagaacttcagacaagattgcctattgggagagggaggttttggccgtgtatataaaggacgcctggagactgggcaggttgttgctgtgaagcaacttgatcgcaatggtcttcaaggaaatagagaattcctggttgaggtcctcatgctcagtcttctacatcacactaacctggtcaatctaattggctattgtgctgatggtgaccagcgccttcttgtctatgagtttatgccattgggatcactggaagaccatttgcatgatttgccacctgataaggaacctcttgactggaacacacggatgaagatagctgcaggtgcagccaagggcttagaatacctacatgacaaggcgagcccgccagttatttatcgtgacttcaaatcatcaaacattcttcttggtgaaggatttcaccccaagctgtctgattttggtcttgcaaaacttggtccagttggtgacaagacccatgtttcaacacgtgtgatgggaacttatggctactgtgccccagaatatgcaatgactgggcagctcacagtgaaatccgatgtctatagctttggtgttgttttcctcgaactgattacagggcgcaaagcaattgacaacacaaagccacagggggagcaaaacctagtggcatgggctcgtccactattcaaggaccgcaggaagttccctaaaatggctgatccaatgctccaaggtcgcttccctatgaggggtctgtatcaggctttagctgttgctgccatgtgtttacaagagcaagctaccactcgccctcatataggagatgttgtcactgcactctcatatctagcttctcagacatatgatccaaatgcccctgttcaacatagcaggagcaattcgtcaactcctagggccagaaatctagctgggtggaatgaagatcgacgcagtgtgcgctcgccgaatcatcattctccagatctgaggagggaagctgccaggtcatcaagagcagaggttagcaggactagttctaccggtgattctggccggagatcaggattggatgatttagacatgacagggtcgcagatgggtagtccagctcaaacaggaagaaaaagagagactccaaggactgctgatagacagcgtgctattgcagaggccaaaacgtggggggagaattctcgagaacggaagcatccgaatggtcatggcagctttgatagtacaaatgagtaa
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| Protein seq | MSCFLCFGSAQEGEAKKPGADSKDARKDGSADRGVSRVGSDKSRSHGGLDSKKDVVIQRDGNNQNIAAQTFTFRELAAATKNFRQDCLLGEGGFGRVYKGRLETGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHTNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDFKSSNILLGEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPQGEQNLVAWARPLFKDRRKFPKMADPMLQGRFPMRGLYQALAVAAMCLQEQATTRPHIGDVVTALSYLASQTYDPNAPVQHSRSNSSTPRARNLAGWNEDRRSVRSPNHHSPDLRREAARSSRAEVSRTSSTGDSGRRSGLDDLDMTGSQMGSPAQTGRKRETPRTADRQRAIAEAKTWGENSRERKHPNGHGSFDSTNE |
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| Function | Receptor-like cytoplasmic kinase 185 [UniProtKB/Swiss-Prot:Q6I5Q6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0045230 | OsLima_01g0045230.01 | Chr01 | 42819710 | 42824079 | + | NAM | ||
| CDS seq | atgagctgcttcctgtgcttcggatcggcccaggagggggaggccaagaagcccggggctgactccaaggacgcgcgcaaggacggctccgcggatcgcggggtgtccagggtcggatcagataaatcgaggtcacatggtggattagactctaagaaggacgttgtcatccaaagagatgggaacaaccaaaatattgctgcacagacgttcacttttcgtgagcttgctgccgccaccaagaacttcagacaagattgcctattgggagagggaggttttggccgtgtatataaaggacgcctggagactgggcaggttgttgctgtgaagcaacttgatcgcaatggtcttcaaggaaatagagaattcctggttgaggtcctcatgctcagtcttctacatcacactaacctggtcaatctaattggctattgtgctgatggtgaccagcgccttcttgtctatgagtttatgccattgggatcactggaagaccatttgcatgatttgccacctgataaggaacctcttgactggaacacacggatgaagatagctgcaggtgcagccaagggcttagaatacctacatgacaaggcgagcccgccagttatttatcgtgacttcaaatcatcaaacattcttcttggtgaaggatttcaccccaagctgtctgattttggtcttgcaaaacttggtccagttggtgacaagacccatgtttcaacacgtgtgatgggaacttatggctactgtgccccagaatatgcaatgactgggcagctcacagtgaaatccgatgtctatagctttggtgttgttttcctcgaactgattacagggcgcaaagcaattgacaacacaaagccacagggggagcaaaacctagtggcatgggctcgtccactattcaaggaccgcaggaagttccctaaaatggctgatccaatgctccaaggtcgcttccctatgaggggtctgtatcaggctttagctgttgctgccatgtgtttacaagagcaagctaccactcgccctcatataggagatgttgtcactgcactctcatatctagcttctcagacatatgatccaaatgcccctgttcaacatagcaggagcaattcgtcaactcctagggccagaaatctagctgggtggaatgaagatcgacgcagtgtgcgctcgccgaatcatcattctccagatctgaggagggaagctgccaggtcatcaagagcagaggttagcaggactagttctaccggtgattctggccggagatcaggattggatgatttagacatgacagggtcgcagatgggtagtccagctcaaacaggaagaaaaagagagactccaaggactgctgatagacagcgtgctattgcagaggccaaaacgtggggggagaattctcgagaacggaagcatccgaatggtcatggcagctttgatagtacaaatgagtaa
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| Protein seq | MSCFLCFGSAQEGEAKKPGADSKDARKDGSADRGVSRVGSDKSRSHGGLDSKKDVVIQRDGNNQNIAAQTFTFRELAAATKNFRQDCLLGEGGFGRVYKGRLETGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHTNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDFKSSNILLGEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPQGEQNLVAWARPLFKDRRKFPKMADPMLQGRFPMRGLYQALAVAAMCLQEQATTRPHIGDVVTALSYLASQTYDPNAPVQHSRSNSSTPRARNLAGWNEDRRSVRSPNHHSPDLRREAARSSRAEVSRTSSTGDSGRRSGLDDLDMTGSQMGSPAQTGRKRETPRTADRQRAIAEAKTWGENSRERKHPNGHGSFDSTNE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.204094 | 0.242600 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0936100 | RBH | 2.704475 | 3.402472 | 8.518624 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71000 | RBH | 1.359736 | 2.006788 | 1.838106 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0936100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046270 | RBH | 1.062392 | 17.402473 | 6.039702 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045780 | RBH | 0.430946 | 3.373232 | 3.491508 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046170 | RBH | 1.536033 | 17.281015 | 9.674089 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045690 | RBH | 0.359267 | 0.250131 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045270 | RBH | 11.082240 | 32.933506 | 18.818722 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0676600 | RBH | 10.9159945 | 22.6896695 | 43.903303 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044790 | RBH | 0.567030 | 1.585860 | 1.978961 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0678400 | RBH | 19.1673555 | 17.835498 | 34.6710365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0014470 | RBH | 0.468396 | 0.496123 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045180 | RBH | 0.597646 | 6.955110 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045510 | RBH | 9.985787 | 17.118446 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045520 | RBH | 1.078865 | 1.480982 | 2.474427 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045230 | RBH | 0.546970 | 10.355731 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045600 | RBH | 0.816019 | 4.852682 | 5.777681 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045310 | RBH | 0.381844 | 29.880548 | 12.431221 |
