Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0043860 | OGI:01118370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:41618675-41623580 | ||||||||
| Gene Symbol | C3H12, OsC3H12 | ||||||||||
| DNA seq | gttaccgagggagtatctacgtagatcggtcacctcagagagattttacaacctgtagttttgaacttttgacctgaagtaggcaggtgcttacgcatgctttaccacgagaaacttggttggaccaggttcggcaccttatcatgccagcattaattttggtcgttggaaggaagctgcatgtttttacttgtgaacagaaaacaatgattgtgacgtgacggccagactcagttgcactgcaccgccttttgttgtccattttaacttcaccatgctaagatacacctccggaatagagctctcaactaatccatgcaattatacaacatgtaatgcagataaaaaggatgatcatcagattgagttcgtccacaggccacagtaccttgcaacctgacatgaatgcacatttgaaatgaaacaacaccgcagtgcaaagcaggctgaaaacaagaaagttttaaacgtcatttcgcttcccaaagatctgcattaacaaaaaataaactgtacatctccggtagcaactcaatttacagaactttgattccggggagttaggagggggtggcaacattcacacagcgcctgagacgggcgtgcgatggacttttttatacatcacggtggtttgggtcacaactgccaggacgccgccttaggaagtgtacgcggatgcggatggggattgcaggagacgccgaaccataggtacattagttgaagcagagccgtaggcatacactcccattggaggagccatcgttggatggtcaaatttgcaattcgcgccgaacttgcagatgccatagcgagaatagaacttgcacagttcttctccctgaaaatctcgaaacagccgtgtcatagtcaatcattaggtgttataggaacaatcaaaggttttttcaagtgttaatcttcatactaatatatacagtgggtactctttatctactgccgtggaactgtcatatttgattatgaaattttagctctagaaaatatttgatcatcaatgtcaagactttatgaccttgcaaaatacatttcctaattgagaacagggtaaaattatgaactatgcctctgaaccttcatacacaggcagcacattttttgttgtaaaattcatcttaatatcagcggaaagactggaccagagaaagaaaaagttaagacaggcatatactcttgatcctctaaaagagatgaggcggtacaatgatcaaccatgaacattaaagtgatacgtggaacatgagaacacaaataattgtcactggaacataagtacaaaaaggtttgtagtaacttaccggacgtagtggaagacccactggactcaagacacaatctggagtaggcattgatcgcacccGgggatgatggaacttgcacaccgcaccaaatttacagtctccagtcttcatgtagtattgacattctggttgatcaggtctctcaggaaatacattctctctctgcaatgcgtattgaggtacaggatatgaactagatctgtagggtgacaacattccctgattgcctgcactggcatcaacttgctgagaagttccataggtttgttgagcccctggggactgcagtcgactctcagaagatgaaacaggcatcatttggcccttgaaaagcaaaatcacaaaaaatcaactttagtatgattccagcaattggtgtaagagtggattccaatgttatagcttttcactttcaaaaaataaatattagtgttctaaacaaatcagaggatataaactgtagcagccaaacttaaattgtagggcaagctgcagtcaacggatctacaaaggattattaatcaattagaaataccatagcacacaacaatcccatttatacagaaacAaaaccacaaagaacatttagttcagtagcagccaaacttaaattgtagggcaagctgcagtcaatggatctacaaaggattattaatcaattagaaacaccatagcacacaacaatgccatttatacagaaacaaaaccacaaagaacattagttcatgcccaaaagagaactattcagcaatcatcacatagttctttccattgaataaatcacttcatacctagttaaatgagagaaaccatcattgtaggaagtgggatttgatatgcaacattactagtggcctgtggagtcagtatagttctgatgaagatcacaactaaagttaataatggtatatttttgcaattcagttttatattttaacagggtcgagagcaattaaagatcaacccagattgttaggaaattaacagagcatgaaagccaacgtaaacaatccatgattgggaaaatcacgtctccactatatgtctatgactgtgagaagaaatgatcttacagtatatgagttccagcttggtacttgaacaagaccttgcggtacaatcatcggtgcataatttgagggattctgccatctagggcttggaataaaagaacctcttggaaaagcccagctagccattgttccagtataaggtggacccgcggttgcagaggaatgtacagaaggataaataggtgaaccacgtgaagaagccatagcattgaaaagttctggatggtgaaatttacatgtattcccatatttacactgtcctgtttttaagtaatatgcacactccttttcactctacagaagcaaacagacttcacttcagtacatcaaagagaagaaactataaaaaggaagggcagatgatgtgctgcagcaataaactacaaaccggtcggagtggatatcctaatgtgtttagctgcaccctccctgcaattccagctttttctctgggatgatggaatttgcatgtaggcccaaacttgcatgttccagtcttcagataatactgaacagaaaattttgagaaattatttcatttcaacacctgtccaacttaataaaaaaactacaccactctaaattgcataatgtcaactctagaaacatagacaaacaaaaacagctagtttccttacacaaggacaatctgcaattgtgtgattataatttggagaaaactgaagctagtctagctgttctgttgttgctgcatgaatgcacaactaatgcatgtaattcttgtctggtttccgttttcacatgaagaagaaagaataaagattaagtctagggatctaggctctcacatgaacttcaaccttttgtcaacctatggtgcacaaattcaatacctcctttctagctacatgttttttcaaagcatatacgaccagacaaaccatttcttgtcacagaatgcatatgcagtagattgctagccattgttaactaataaaccctggcctgagttcaagtaaccataattacctgacattctggttgccccatcctctcagggtattctcctttcattctggcagaggcaatagcctaacattaaacagatccaatctaacttgagaataaaaacatgaggtatgaagaaaagataaaacgatcagaattgaatataagatataatttacagaaaaatggtagtcactaatttaaatctgtaatgcatcactcggcctatgcctgctggtggcaattgtccaaaggagaatgggtctctgcttatcatgaaacatGggttacattacatacagctgaacatgctccattgcgtagtccttccccagtttcagcctattcttctaaactacaacctaatgatgacatcctgactgagattaccccatgaatcagtgtgataagaaacaataatgctacataagaacagttgggtcaagtatctattcaccagattcctatcctgaggatgattgaacctgcagctcataccgaacctgcacaatccagtcctgaggtagtaagtgcagtccggttctccggaccgctcaggatatggtccaggttgcatagcgccactgccgctcatggtcatctgctgccacataccctctgcaaccaacattgcacacaccacatgaaacaaaaatccaagaccaacaagcacacaagatgaaagttgttcggcgtcaataaggtcacgctataaaactacccacatttcaccagcaacggcacaaacacaataaacagacccaaacaccacttgattcgctaatatctcacttgtggtagtaacgaaaattctacaatagcatccactcattctagatgtatcacaggttaaacatgaaattgtaaaaaaaaaaaaaggatagctgataagcacatcactgtctaaccagaatgagtcacaccacgaaaacctcacttacgcgcctacaaggagtagtttccgttgcaatatgattcgatggattattattactccgtgattcataacaaaaataccagcggagtagctgctagttaaatccatgagaaaaatcacgaaacactacgcaccggagagctaaacctactcagaattaatcccctccaaaccccaattccaccgaccgaccaatcaagcgcgcagggtaaaaagcgcaggagaaatccaaacctccatagagagcggcggggtcgtgggaaggctcgtccgtggcggcggcggtggcggggagctgcgagggagggggggaggcggaggaggaggaagaggaggcgtgggggcggcggcggaggccgtcaccgtcaccaccgctggagcggaggcccttccggcgtcgtccatcggcggcgagctgcggcgcgggccatcacgcgatcgccgcggcggcggcggcgacgcgggatgccatcctcggagctccggcgacgggcggtggcggcggcggtggaggtggggggcgggtgatcggtggcgcggcggtgaggaggtggagggcgccctttgcctgccttgccccttgtatttattcctctctctct
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| CDS seq | atgtggcagcagatgaccatgagcggcagtggcgctatgcaacctggaccatatcctgagcggtccggagaaccggactgcacttactacctcaggactggattgtgcaggttcggtatgagctgcaggttcaatcatcctcaggataggaatctggctattgcctctgccagaatgaaaggagaataccctgagaggatggggcaaccagaatgtcagtattatctgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcccagagaaaaagctggaattgcagggagggtgcagctaaacacattaggatatccactccgaccgagtgaaaaggagtgtgcatattacttaaaaacaggacagtgtaaatatgggaatacatgtaaatttcaccatccagaacttttcaatgctatggcttcttcacgtggttcacctatttatccttctgtacattcctctgcaaccgcgggtccaccttatactggaacaatggctagctgggcttttccaagaggttcttttattccaagccctagatggcagaatccctcaaattatgcaccgatgattgtaccgcaaggtcttgttcaagtaccaagctggaactcatatactggccaaatgatgcctgtttcatcttctgagagtcgactgcagtccccaggggctcaacaaacctatggaacttctcagcaagttgatgccagtgcaggcaatcagggaatgttgtcaccctacagatctagttcatatcctgtacctcaatacgcattgcagagagagaatgtatttcctgagagacctgatcaaccagaatgtcaatactacatgaagactggagactgtaaatttggtgcggtgtgcaagttccatcatcccCgggtgcgatcaatgcctactccagattgtgtcttgagtccagtgggtcttccactacgtccgggagaagaactgtgcaagttctattctcgctatggcatctgcaagttcggcgcgaattgcaaatttgaccatccaacgatggctcctccaatgggagtgtatgcctacggctctgcttcaactaatgtacctatggttcggcgtctcctgcaatccccatccgcatccgcgtacacttcctaa
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| Protein seq | MWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVYAYGSASTNVPMVRRLLQSPSASAYTS |
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| Function | Zinc finger CCCH domain-containing protein 12 [UniProtKB/Swiss-Prot:Q5JLB5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0043860 | OsLima_01g0043860.01 | Chr01 | 41618675 | 41623580 | - | NAM | ||
| CDS seq | atgtggcagcagatgaccatgagcggcagtggcgctatgcaacctggaccatatcctgagcggtccggagaaccggactgcacttactacctcaggactggattgtgcaggttcggtatgagctgcaggttcaatcatcctcaggataggaatctggctattgcctctgccagaatgaaaggagaataccctgagaggatggggcaaccagaatgtcagtattatctgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcccagagaaaaagctggaattgcagggagggtgcagctaaacacattaggatatccactccgaccgagtgaaaaggagtgtgcatattacttaaaaacaggacagtgtaaatatgggaatacatgtaaatttcaccatccagaacttttcaatgctatggcttcttcacgtggttcacctatttatccttctgtacattcctctgcaaccgcgggtccaccttatactggaacaatggctagctgggcttttccaagaggttcttttattccaagccctagatggcagaatccctcaaattatgcaccgatgattgtaccgcaaggtcttgttcaagtaccaagctggaactcatatactggccaaatgatgcctgtttcatcttctgagagtcgactgcagtccccaggggctcaacaaacctatggaacttctcagcaagttgatgccagtgcaggcaatcagggaatgttgtcaccctacagatctagttcatatcctgtacctcaatacgcattgcagagagagaatgtatttcctgagagacctgatcaaccagaatgtcaatactacatgaagactggagactgtaaatttggtgcggtgtgcaagttccatcatcccCgggtgcgatcaatgcctactccagattgtgtcttgagtccagtgggtcttccactacgtccgggagaagaactgtgcaagttctattctcgctatggcatctgcaagttcggcgcgaattgcaaatttgaccatccaacgatggctcctccaatgggagtgtatgcctacggctctgcttcaactaatgtacctatggttcggcgtctcctgcaatccccatccgcatccgcgtacacttcctaa
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| Protein seq | MWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVYAYGSASTNVPMVRRLLQSPSASAYTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.924267 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0917400 | RBH | 5.967182 | 4.578445 | 7.278226 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68860 | RBH | 2.550071 | 2.278131 | 1.584074 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0917400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044940 | RBH | 0.513177 | 8.721074 | 7.188251 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0044490 | RBH | 0.997252 | 1.483320 | 4.865885 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044860 | RBH | 1.283028 | 14.183740 | 10.343705 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0044320 | RBH | 0.124023 | 0.128466 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043890 | RBH | 4.354265 | 8.434805 | 21.371536 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0660200 | RBH | 5.9082165 | 6.625905 | 7.9825425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0043520 | RBH | 0.272089 | 0.683512 | 2.572667 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0661800 | RBH | 15.5362205 | 5.289183 | 7.222121 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043820 | RBH | 0.968256 | 8.528451 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0044130 | RBH | 6.717811 | 1.981419 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0044080 | RBH | 1.114027 | 0.785774 | 2.207474 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043880 | RBH | 0.866739 | 4.099891 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G044260 | RBH | 0.118842 | 0.421129 | 3.128822 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043980 | RBH | 1.136048 | 3.725737 | 8.984661 |
