Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0043200 | OGI:01117240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:41157211-41158410 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacttggctggatgtcttgccttctgatgagaccggagtgatttatcactactaaatgccctgtgagagaaaagaaccatctaatgttagaatgcttgtgataagactgcatcttatcacagcataataataaactgccaagctgtatacatacttgctgcaatacttgcaggcatgggtgccggaggattcgggagtctccttatttggtttgctgattgccggcgtcttgccatcttcctttgctggatgagtattcttatcacctttagtaaatgcgaaaaattagctaaagttgagtcccctgtgtgttgcaaggttaataaaaatagcgtcagtccggcagagctaacctgttttctggccaaagtgtgttgcagtctttgacttcttaccagaagaaagtgtagatccagcagctgtcagcttgctgctctcaggctgccgagcacaaaacaagagtcagatcgcatcttagagacaaatcaagagtcagatcgcatcttagagacaaatcaagaacagtggcagatatcgggcatactttctctggaatttcatcttcctcatcactttcatcctcttcatcagtggacacaatcgatgaagatgattcatcctgcccatcactcccatcctcttcttcactggactccatttctgctggtaactcatcagatccatcatcctcatcacctgactcatccttaaggggaaaaaagtgagcaatattacaaaaactatacataagactttcttcgtcataaaactatacataaaactttatgagggtaaatgcactttcatcataaacttacatcatcatcatcggatgaggacgagtccaaagaatcatcatcatcatcagatgaggacaagtccataccatcatcagaattatcctttttaccttcctctgcaacaggccttcccagatgtttaccttaacaaatatagtgatatacagcaatcccagagcattaattcagccattgtcaagaaagcgcatgtgtgatcttaaacgcgcaactaataaaaagaaaataaatctgcatacccataatgtcacagatgtcagacatgttttcatcttcatctgaaataaggacatactagttagtttatgttataatagaaatattggatacttaaacaatagaaattatttcagaaatatcagtcaatgaatttaccctcat
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| CDS seq | atgagggatgagtcaggtgatgaggatgatggatctgatgagttaccagcagaaatggagtccagtgaagaagaggatgggagtgatgggcaggatgaatcatcttcatcgattgtgtccactgatgaagaggatgaaagtgatgaggaagatgaaattccagagaaacctgagagcagcaagctgacagctgctggatctacactttcttctggtaagaagtcaaagactgcaacacactttggccagaaaacaggtgataagaatactcatccagcaaaggaagatggcaagacgccggcaatcagcaaaccaaataaggagactcccgaatcctccggcacccatgcctgcaagtattgcagcaaggcatttagtagtgataaatcactccggtctcatcagaaggcaagacatccagccaagtga
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| Protein seq | MRDESGDEDDGSDELPAEMESSEEEDGSDGQDESSSSIVSTDEEDESDEEDEIPEKPESSKLTAAGSTLSSGKKSKTATHFGQKTGDKNTHPAKEDGKTPAISKPNKETPESSGTHACKYCSKAFSSDKSLRSHQKARHPAK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0043200 | OsLima_01g0043200.01 | Chr01 | 41157211 | 41158410 | - | NAM | ||
| CDS seq | atgagggatgagtcaggtgatgaggatgatggatctgatgagttaccagcagaaatggagtccagtgaagaagaggatgggagtgatgggcaggatgaatcatcttcatcgattgtgtccactgatgaagaggatgaaagtgatgaggaagatgaaattccagagaaacctgagagcagcaagctgacagctgctggatctacactttcttctggtaagaagtcaaagactgcaacacactttggccagaaaacaggtgataagaatactcatccagcaaaggaagatggcaagacgccggcaatcagcaaaccaaataaggagactcccgaatcctccggcacccatgcctgcaagtattgcagcaaggcatttagtagtgataaatcactccggtctcatcagaaggcaagacatccagccaagtga
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| Protein seq | MRDESGDEDDGSDELPAEMESSEEEDGSDGQDESSSSIVSTDEEDESDEEDEIPEKPESSKLTAAGSTLSSGKKSKTATHFGQKTGDKNTHPAKEDGKTPAISKPNKETPESSGTHACKYCSKAFSSDKSLRSHQKARHPAK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68160 | SBH | 2.751838 | 2.262084 | 1.451323 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044260 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044190 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043270 | SBH | 22.146070 | 21.992575 | 25.836653 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042870 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0653600 | RBH | 5.833362 | 11.695232 | 29.2314345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0043250 | SBH | 1.198028 | 0.374319 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043440 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043400 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043210 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043600 | RBH | 0.0 | 2.050349 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043330 | RBH | 0.0 | 0.0 | 0.0 |
