Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0043190 | OGI:01117220 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:41152791-41155906 | ||||||||
| Gene Symbol | HDT2, OsHDT2, HDT702 | ||||||||||
| DNA seq | gcctccactccgccgcgcggctgctctctctccctctctaaaaccctagcagaggagcacggcgaggagaggagaggagggggaaggagggagaggccacggggaacgcgatcgccttcgtgccgcccatggagacgaccatgggattctggggtgcgttcctcttgcccccgaaccctactactgtttctcgctcccgattcgacgccatctttaaTtttttttggtcgcgcctagtcgataggggaaattttgaggggtaaaaatggtgtggtggattgttgatcctcggtttcttggttaaatgctgggttttcccccatatgctccggagatctggggatattttcaccggcaatgcttcctgataggatgcggtggtattttggtgtatttgggggagaaatagaagcaatattcgtgtaggaaaatgcagtcataccctcgaactttaatcaggctcttggcagaactgcaggaaatttggctattccattgatgagttggattcaagtgaacaagttgatatctaggagtaataaggcagtagtttgtcttaatgaactgtgccttgctctggagagtaatacattccctgcttctgtttggtggttcctggatttggtatagtttgtattttcatgttatggttggatgatttagtgcttcagtttttttaatgaattaagcatggcatgaagcttactggagagtgttgactggcaaggtcgatgttgattggtcaatctttgatttttcaggtcttcatgattgactatggtttcttcttgcctatgtagatatgaaatatttatcactgaaatacgcgcattcttctacttatatttgccttcgattatgcgttgtacttattctgaacacaagtgtggcattcaaactgcccgttggcatgccactaatgttttttcccctctgtgtcaactgtgaagagatcttttgattgcgttggacacaagcgtgatgggcatatttgtagagcttaagaaagaagcaaatgtttgtcattcccaatttcacgtgttgctcatttttaccaatgtttactaatggctttcatgaatgtaattcacatttctaggagttgctgtcagacctggagagacagtgatgtgtgatccaccaggagaattctattatcatatttcacaggtttgtttaacaaattgtacctaaaagctcatttggaggtggatcaagtttgtttactttaagttcccattttcactgcagatagcgttagagcctggtgagctgaatgagaacgtgcaagtttttggtgaagttgatggtaaaaggattctgctcggcacactttcagttgaacatcgtcctcagttgtcaattgatctggtgtttgaaaaggagtttgagttactgcatacctcaaagacctacaacatcttcttttctggctaccaagctgcggatgcgagaagatatccttttgcatttataatgatctttcttcaaataaatcatgagtaggaaTttttttccttaaccttttgcctggctgtatgcacatctgactctcctactgaagaaggtatgtgtccttgttctttactagtagtaattggtcatctctgatgtttccgctgcacttggcctgattctcataagatgtgatgtttcaggtgatgaatctgatgaggaggttccactggctattccactattccccaattcagatggtatataatttgctaatcgtaacaattattttataagacttaagatagcatggtaattgaacttataagactttatatctttttacgctagaatctgatgcacatgctaatacaagctggtaagcgaatcttcgaatgatacactcttttatgttatttactttcagatgataagatcaaagaagttcaaaacagtccaagtaagtttgccacacttaagtctgctgctgctgcatCccctacaccagaggctattgtagaggaaagaaagaattatgggaaatcagaagctgatgatgatgacagcgatgaagaaagtgatgcttcaggcgaggatgaatatgatgatgatgaggtttgtaaaacagtaacaccattaaaactagcagcatgctgattcttgttcagactgaaaccatgacatggttttggacttcggtaggtgtgcgaacaaagttttctttatgctggatatgttatgatcatgcgatatatttgtaggatatgattgataaacaggattctagtgatgatgatggtgatagttcggatgaagaagagactccttcaaaggtgtgagcttgttcaaggaattggtagttttctgttgctttgtttgtcgaaaatattgaaatttttttgttgtttgttttcttgacctcccagaatactaaaggcacaaataggcatgttgaaacacccttgaacactcctccacagaaaagggcaaggctagcaaccccaattatggacagcaaagctggtcggaaactgtttcttttgatttgttttcccccctaaattcactgttttttttatggcacagagattgcatttctcacttgtagatcttgtgtgcaggaactggcaagagaagtggctatgtccatgtcgcgactccttatccagcaaaacaggcaaagaagacacctgtaaacaatgacatggctaagcaatcctctggctatgtccacgttgcgaccccttatccagcaaaacaggcaaagaagaggactgccaataatgacatgtctgagcattctgctggttatgcctgcaagccatgcaacaagtaaatttttgttcttttcatttgaatgatttaccttggtaatgctgctatatcctcacatatgcacttcctattttgctcaggactttcaacacctctatgggtctggaagctcattccaaggcgaaacacactgcaactaagtgatctgaaataccttctgggcaatcctgtgtaggtgtgttagtgataggtaactgaattctgaagctggagatccagatattttgatgaagcacaattttggagcacttgccaagtttctgaaacatgtagatatatggcgcttttttaatgaatgcatatggatgttgcacgtttcattgttc
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| CDS seq | atggagacgaccatgggattctggggagttgctgtcagacctggagagacagtgatgtgtgatccaccaggagaattctattatcatatttcacagatagcgttagagcctggtgagctgaatgagaacgtgcaagtttttggtgaagttgatggtaaaaggattctgctcggcacactttcagttgaacatcgtcctcagttgtcaattgatctggtgtttgaaaaggagtttgagttactgcatacctcaaagacctacaacatcttcttttctggctaccaagctgcggatgcgagaagatatccttttgcatttataatgatctttcttcaaataaatcatgaatgtgatgtttcaggtgatgaatctgatgaggaggttccactggctattccactattccccaattcagatgatgataagatcaaagaagttcaaaacagtccaagtaagtttgccacacttaagtctgctgctgctgcatCccctacaccagaggctattgtagaggaaagaaagaattatgggaaatcagaagctgatgatgatgacagcgatgaagaaagtgatgcttcaggcgaggatgaatatgatgatgatgaggatatgattgataaacaggattctagtgatgatgatggtgatagttcggatgaagaagagactccttcaaagaatactaaaggcacaaataggcatgttgaaacacccttgaacactcctccacagaaaagggcaaggctagcaaccccaattatggacagcaaagctggaactggcaagagaagtggctatgtccatgtcgcgactccttatccagcaaaacaggcaaagaagacacctgtaaacaatgacatggctaagcaatcctctggctatgtccacgttgcgaccccttatccagcaaaacaggcaaagaagaggactgccaataatgacatgtctgagcattctgctggttatgcctgcaagccatgcaacaagactttcaacacctctatgggtctggaagctcattccaaggcgaaacacactgcaactaagtga
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| Protein seq | METTMGFWGVAVRPGETVMCDPPGEFYYHISQIALEPGELNENVQVFGEVDGKRILLGTLSVEHRPQLSIDLVFEKEFELLHTSKTYNIFFSGYQAADARRYPFAFIMIFLQINHECDVSGDESDEEVPLAIPLFPNSDDDKIKEVQNSPSKFATLKSAAAASPTPEAIVEERKNYGKSEADDDDSDEESDASGEDEYDDDEDMIDKQDSSDDDGDSSDEEETPSKNTKGTNRHVETPLNTPPQKRARLATPIMDSKAGTGKRSGYVHVATPYPAKQAKKTPVNNDMAKQSSGYVHVATPYPAKQAKKRTANNDMSEHSAGYACKPCNKTFNTSMGLEAHSKAKHTATK |
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| Function | Histone deacetylase HDT1 [UniProtKB/Swiss-Prot:Q8LJS2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0043190 | OsLima_01g0043190.01 | Chr01 | 41152791 | 41155906 | + | NAM | ||
| CDS seq | atggagacgaccatgggattctggggagttgctgtcagacctggagagacagtgatgtgtgatccaccaggagaattctattatcatatttcacagatagcgttagagcctggtgagctgaatgagaacgtgcaagtttttggtgaagttgatggtaaaaggattctgctcggcacactttcagttgaacatcgtcctcagttgtcaattgatctggtgtttgaaaaggagtttgagttactgcatacctcaaagacctacaacatcttcttttctggctaccaagctgcggatgcgagaagatatccttttgcatttataatgatctttcttcaaataaatcatgaatgtgatgtttcaggtgatgaatctgatgaggaggttccactggctattccactattccccaattcagatgatgataagatcaaagaagttcaaaacagtccaagtaagtttgccacacttaagtctgctgctgctgcatCccctacaccagaggctattgtagaggaaagaaagaattatgggaaatcagaagctgatgatgatgacagcgatgaagaaagtgatgcttcaggcgaggatgaatatgatgatgatgaggatatgattgataaacaggattctagtgatgatgatggtgatagttcggatgaagaagagactccttcaaagaatactaaaggcacaaataggcatgttgaaacacccttgaacactcctccacagaaaagggcaaggctagcaaccccaattatggacagcaaagctggaactggcaagagaagtggctatgtccatgtcgcgactccttatccagcaaaacaggcaaagaagacacctgtaaacaatgacatggctaagcaatcctctggctatgtccacgttgcgaccccttatccagcaaaacaggcaaagaagaggactgccaataatgacatgtctgagcattctgctggttatgcctgcaagccatgcaacaagactttcaacacctctatgggtctggaagctcattccaaggcgaaacacactgcaactaagtga
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| Protein seq | METTMGFWGVAVRPGETVMCDPPGEFYYHISQIALEPGELNENVQVFGEVDGKRILLGTLSVEHRPQLSIDLVFEKEFELLHTSKTYNIFFSGYQAADARRYPFAFIMIFLQINHECDVSGDESDEEVPLAIPLFPNSDDDKIKEVQNSPSKFATLKSAAAASPTPEAIVEERKNYGKSEADDDDSDEESDASGEDEYDDDEDMIDKQDSSDDDGDSSDEEETPSKNTKGTNRHVETPLNTPPQKRARLATPIMDSKAGTGKRSGYVHVATPYPAKQAKKTPVNNDMAKQSSGYVHVATPYPAKQAKKRTANNDMSEHSAGYACKPCNKTFNTSMGLEAHSKAKHTATK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.182745 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0909100 | RBH | 0.579455 | 1.177547 | 2.470222 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68104 | RBH | 0.390314 | 0.788878 | 0.633378 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0909100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044250 | RBH | 0.291150 | 3.821912 | 1.457949 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043790 | RBH | 0.213783 | 0.570553 | 1.915620 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044180 | RBH | 0.590867 | 1.314740 | 5.807397 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043640 | RBH | 0.097929 | 0.564748 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043220 | RBH | 2.635728 | 19.042362 | 10.644184 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0652400 | RBH | 3.8723115 | 13.8318765 | 17.7325695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042860 | RBH | 0.343439 | 0.313688 | 0.823720 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0653500 | RBH | 3.240856 | 12.414334 | 29.9023615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0043250 | RBH | 1.198028 | 0.374319 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043150 | RBH | 0.502288 | 15.525805 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043430 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043390 | RBH | 0.271067 | 0.934305 | 0.338544 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043200 | RBH | 0.346679 | 7.120380 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043590 | RBH | 0.147636 | 4.620415 | 2.938989 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043320 | RBH | 1.395734 | 20.894846 | 8.572827 |
