Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0042240 | OGI:01011440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:40400538-40404759 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacttctgttgcatttggcttctctttttttTgggacaagtgcgaatgttatggtcatgggatccacaaccactacatgtcaccaaacccttgcttctaatcacatctatcagcctcttttttcttggctcactcttgtgcctacctttgctattagagcattttggatccagtaaaacagaagtagaagcaattccaaccatatctgttgtttcagtttcagcaaccgcaccctttgtgctctcagcatcaataccaacaccactaggaccatcaatataccacttgagcaccaacagaagctacaccacaagttgtcgccgcgcatcctgaacatgaacagtagcctcgttaggagccgtatcactcattgccttcaacccatcttcaatcttgtcactttcattcatcacatatataaacttttcttttgtttttgatgcatctgaagccaacttaatcattttctgtgacaagatgttgaacctgagtaaagggttgctttcaagaacagtagcagacatcaatgtgtttggcacagataattcttggtttttgtctttcagcctccatctttcaataaaatatttctcaggtagttttgttatgttcaagtgaatgagtactttgagcacatgaacacacaaaataccatccttcttaaatcttgaacagatacattcatattcttcagatatagtatcaacaaccacaatatacttcctttttctgaaatcctgtagtgcatgaatctctgatttgtacacctcaaaaatagaatcacgcactttcacggtcacatcatacttggtatagctttgcaagatacgctgaaatgcccaaaatatcttcctagtatacagttttgcagcttgcttctcaaattgatattctgaccaagtatctggaacagtattcctagtcagcgattcctgttctttgaagcactcataaattgtttctgcaatcctttcatactgtgctaggaatgcagaaacactatgagatgaacaaatgtcagctttgtaccttgaatttgtcccctcactccTtgctgttgtctgaatcaaagggcaccaattgcttttgaagtaaactggtgcccatctctttctagtgacccacataagctgaaaatacctaacattatgcagattgttccttcttatgaaatctttccacaaatattcaaattcagcctctgtctgtgattttgtaacaatatcatggaaatccttgtaaacttcttcatcctctgaattgaatgtccttcctgttttgtcccttgcatttgataacatatggaacaggcaattcctatgaacagtgtctggaaaaactatggcaatagcagccttcattgccaagtcttgatcagttataatagtagcaggaagcttgccacccatacaatcaaggaacgtattgaacaaccactgaaaagtctcacttgtttcatcttgtaggaatgcataaccaaataggcaattgtcaccatgactagttatccctacaaatggagcaaagggcaaatcatacctatttgtcttgtacgtcgtgtcaaaactaactatgtcaccaaacatctcataaaattttctgctgttcccatcggaccaaaacagactcttcacaacattgttctcatcagttctgaatctgaaataaaacaatggatcctctgatcttttcttctcaaaaaaatccaaacactgcatcatgtcatttttcccactttctcttctaacaaaatctctataattgctcacagccttttttgtgtaaggaactgcagacaagccacccctaacatatgacaaaacagacataatcatccttgtgggcacattgattttgttcaaagttcttatcaaaagtttctcctggtctgtcatatgtttgtgagaccttaggaattttctttcttctggtggagatagcggatgattgtgctctagaTtgagccttgtaatgtaccaaaagcccctcttcaatgttatcaccatctcagctttgcaatttgtgtaaaccactttgttctgtttTCttttttttaccaatggatttgttgtgtttgtttgcaaacaattctcaacttcatcaacctcatgcaggtccttCtcctttggatcacttggtttcctccacctgttgcatttgaacgtgtgccttgtcacaacatcggtttttctgctatggtaattgctagctttgcatgtagagaaaccaaccatataagcataaccattgtagaagtcaaaagcttcattctcattagcaaaaactttgttgattgacggcacatgtgcactgttagcatcctgaccacctctctgaacaatagctacactttcattctccagaaatatgtttatatcttcctcactaaaattttgatctggattttctgcacttttatcttgttctatttcctcaacttgctgaaatgtaactattgcatgatcagacaataaatcctcttctgttgcttgctcaaagtgctggtcaaaacaggcatcagcctcaatagtttgagtttgcatttcattataaatcacttctacagatgatgctttcaattgtactgttggcctgcacatctcagcttgattatcaacatcagcgcttgatttctgcatttcatcatatagcatgtccagtgatgccacaggaggatgcacagctacactttgtggcaaagagttgcacatctgagaggtgtctgtttgtgcattttgcaggtcattttgttgataaccattgtgaggatcaaaaccccaaaaggtgttgtcatactcaaatctattggatgtcaaatatagagcactctgcagtggtaagaaaaaaaattctaataaagagatcttttttatagttctattttgatttgaactttttaaccagattagctatatccacaccaatcatgaatatgtttttaatcaaataatgggatggcacagcacaaatcaaataaacaaaagggaacaacacacctctgattcaataggagcttgcaatagctgcatgaaactgccataagtgttttggagcagaggaagaccacccctgtttgcaaaaaaaaaaaagacagtgtgggagttatgactgtgcacataaagttttagttaaatatttcatttaatatgtgttttattttttctactcactaccacctcagcaccagcaagatttgcattaggtgagacagagacttgctggattaaatttgtataggtgatgcctccctcctgtgataatctgaataacatcccatagtcttcatttgattctgcctctgtgccctgcacatttggatagatgaaaaaaatggcattacatccttttttctgtacaatgtaatggcatttgaatgaactgagagctcccataattcaaagaatgactgcaagagaacaaatgtgcagttttaacagttagcgaatcaagatatttctgagttgtgcactatttagaaattcagtcacccagttgggcataaggaaaagcagacactctgcacaagatttgctatagttgagagcagttttttttgcagtaTttttgcattacaaccacatgaaaaaaatagaccagattaatgttgtgttgcttatgagtttttatataataaagttttgtgcagggaagcaacagaaaacttagggatagtggaaagggaagaaaagcaaaaaaaaaaacagaaaggaagaagaggttaaactagagagggggaacacagaacaaaagaaccctccatcaagtaaattttcccccaagttcttcctgttctttcctcagcacatgttcttcttcagaggaagggggtggtggaaagggaagaaaagcaaaaaaaaaaaatcaaaagatgggaggaagaggtgaaaaggagggaggtgggaacaaagagcaaagagaaaaaaaggagggaggtgggaacaaagagcaaagagaaaaacctccattaagtaaaattttctcaggttcttcctgtccaccctagcacacgttcttctcctttttcgtgttctttctctcctctctccttttttgcttttccaatctgagtttcgatctctcctctcgtttttcttttggatctgagtttctatcttgaagcacaagacatttttttaagagacccagggagtggaccatttttgtgacagaacccaaatcggagctaaaaagcccaaaaacgggtatcatgtgagagcccat
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| CDS seq | atgggctctcacatgataccctcattctttgaattatgggagctctcagttcattcaaatgccattacattgtacagaaaaaaggatggcacagaggcagaatcaaatgaagactatgggatgttattcagattatcacaggagggaggcatcacctatacaaatttaatccagcaagtctctgtctcacctaatgcaaatcttgctggtgctgaggtggtactattgcaagctcctattgaatcagagagtgctctatatttgacatccaatagatttgagtatgacaacaccttttggggttttgatcctcacaatggttatcaacaaaatgacctgcaaaatgcacaaacagacacctctcagatgtgcaactctttgccacaaagtgtagctgtgcatcctcctgtggcatcactggacatgctatatgatgaaatgcagaaatcaagcgctgatgttgataatcaagctgagatgtgcaggccaacagtacaattgaaagcatcatctgtagaagtgatttataatgaaatgcaaactcaaactattgaggctgatgcctgttttgaccagcactttgagcaagcaacagaagaggatttattgtctgatcatgcaatagttacatttcagcaagttgaggaaatagaacaagataaaagtgcagaaaatccagatcaaaattttagtgaggaagatataaacatatttctggagaatgaaagtgtagctattgttcagagaggtggtcaggatgctaacagtgcacatgtgccgtcaatcaacaaagtttttgctaatgagaatgaagcttttgacttctacaatggttatgcttatatggttggtttctctacatgcaaagctagcaattaccatagcagaaaaaccgatgttgtgacaaggcacacgttcaaatgcaacaggtggaggaaaccaagtgatccaaaggaGaaggacctgcatgaggttgatgaagttgagaattgtttgcaaacaaacacaacaaatccattggtaaaaaaaaGAaaacagaacaaagtggtttacacaaattgcaaagctgagatggtgataacattgaagaggggcttttggtacattacaaggctcaAtctagagcacaatcatccgctatctccaccagaagaaagaaaattcctaaggtctcacaaacatatgacagaccaggagaaacttttgataagaactttgaacaaaatcaatgtgcccacaaggatgattatgtctgttttgtcatatacagaggctgaatttgaatatttgtggaaagatttcataagaaggaacaatctgcataatgttaggtattttcagcttatgtgggtcactagaaagagatgggcaccagtttacttcaaaagcaattggtgccctttgattcagacaacagcaAggagtgaggggacaaattcaaggtacaaagctgacatttgttcatctcatagtgtttctgcattcctagcacagtatgaaaggattgcagaaacaatttatgagtgcttcaaagaacaggaatcgctgactaggaatactgttccagatacttggtcagaatatcaatttgagaagcaagctgcaaaactgtatactaggaagatattttgggcatttcagcgtatcttgcaaagctataccaagtatgatgtgaccgtgaaagtgcgtgattctatttttgaggtgtacaaatcagagattcatgcactacaggatttcagaaaaaggaagtatattgtggttgttgatactatatctgaagaatatgaatgtatctgttcaagatttaagaaggatgaaaagtttatatatgtgatgaatgaaagtgacaagattgaagatgggttgaaggcaatgagtgatacggctcctaacgaggctactgttcatgttcaggatgcgcggcgacaacttgtgcttctgttggtgctcaagtggtatattgatggtcctagtggtgttggtattgatgctgagagcacaaagggtgcggttgctgaaactgaaacaacagatatggttggaattgcttctacttctgttttactggatccaaaatgctctaatagcaaaggtaggcacaagagtgagccaagaaaaaagaggctgatagatgtgattagaagcaagggtttggtgacatgtagtggttgtggatcccatgaccataacattcgcacttgtcccAaaaaaaagagaagccaaatgcaacagaagtga
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| Protein seq | MGSHMIPSFFELWELSVHSNAITLYRKKDGTEAESNEDYGMLFRLSQEGGITYTNLIQQVSVSPNANLAGAEVVLLQAPIESESALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQSVAVHPPVASLDMLYDEMQKSSADVDNQAEMCRPTVQLKASSVEVIYNEMQTQTIEADACFDQHFEQATEEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIFLENESVAIVQRGGQDANSAHVPSINKVFANENEAFDFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRWRKPSDPKEKDLHEVDEVENCLQTNTTNPLVKKRKQNKVVYTNCKAEMVITLKRGFWYITRLNLEHNHPLSPPEERKFLRSHKHMTDQEKLLIRTLNKINVPTRMIMSVLSYTEAEFEYLWKDFIRRNNLHNVRYFQLMWVTRKRWAPVYFKSNWCPLIQTTARSEGTNSRYKADICSSHSVSAFLAQYERIAETIYECFKEQESLTRNTVPDTWSEYQFEKQAAKLYTRKIFWAFQRILQSYTKYDVTVKVRDSIFEVYKSEIHALQDFRKRKYIVVVDTISEEYECICSRFKKDEKFIYVMNESDKIEDGLKAMSDTAPNEATVHVQDARRQLVLLLVLKWYIDGPSGVGIDAESTKGAVAETETTDMVGIASTSVLLDPKCSNSKGRHKSEPRKKRLIDVIRSKGLVTCSGCGSHDHNIRTCPKKKRSQMQQK |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0042240 | OsLima_01g0042240.01 | Chr01 | 40400538 | 40404759 | - | NAM | ||
| CDS seq | atgggctctcacatgataccctcattctttgaattatgggagctctcagttcattcaaatgccattacattgtacagaaaaaaggatggcacagaggcagaatcaaatgaagactatgggatgttattcagattatcacaggagggaggcatcacctatacaaatttaatccagcaagtctctgtctcacctaatgcaaatcttgctggtgctgaggtggtactattgcaagctcctattgaatcagagagtgctctatatttgacatccaatagatttgagtatgacaacaccttttggggttttgatcctcacaatggttatcaacaaaatgacctgcaaaatgcacaaacagacacctctcagatgtgcaactctttgccacaaagtgtagctgtgcatcctcctgtggcatcactggacatgctatatgatgaaatgcagaaatcaagcgctgatgttgataatcaagctgagatgtgcaggccaacagtacaattgaaagcatcatctgtagaagtgatttataatgaaatgcaaactcaaactattgaggctgatgcctgttttgaccagcactttgagcaagcaacagaagaggatttattgtctgatcatgcaatagttacatttcagcaagttgaggaaatagaacaagataaaagtgcagaaaatccagatcaaaattttagtgaggaagatataaacatatttctggagaatgaaagtgtagctattgttcagagaggtggtcaggatgctaacagtgcacatgtgccgtcaatcaacaaagtttttgctaatgagaatgaagcttttgacttctacaatggttatgcttatatggttggtttctctacatgcaaagctagcaattaccatagcagaaaaaccgatgttgtgacaaggcacacgttcaaatgcaacaggtggaggaaaccaagtgatccaaaggaGaaggacctgcatgaggttgatgaagttgagaattgtttgcaaacaaacacaacaaatccattggtaaaaaaaaGAaaacagaacaaagtggtttacacaaattgcaaagctgagatggtgataacattgaagaggggcttttggtacattacaaggctcaAtctagagcacaatcatccgctatctccaccagaagaaagaaaattcctaaggtctcacaaacatatgacagaccaggagaaacttttgataagaactttgaacaaaatcaatgtgcccacaaggatgattatgtctgttttgtcatatacagaggctgaatttgaatatttgtggaaagatttcataagaaggaacaatctgcataatgttaggtattttcagcttatgtgggtcactagaaagagatgggcaccagtttacttcaaaagcaattggtgccctttgattcagacaacagcaAggagtgaggggacaaattcaaggtacaaagctgacatttgttcatctcatagtgtttctgcattcctagcacagtatgaaaggattgcagaaacaatttatgagtgcttcaaagaacaggaatcgctgactaggaatactgttccagatacttggtcagaatatcaatttgagaagcaagctgcaaaactgtatactaggaagatattttgggcatttcagcgtatcttgcaaagctataccaagtatgatgtgaccgtgaaagtgcgtgattctatttttgaggtgtacaaatcagagattcatgcactacaggatttcagaaaaaggaagtatattgtggttgttgatactatatctgaagaatatgaatgtatctgttcaagatttaagaaggatgaaaagtttatatatgtgatgaatgaaagtgacaagattgaagatgggttgaaggcaatgagtgatacggctcctaacgaggctactgttcatgttcaggatgcgcggcgacaacttgtgcttctgttggtgctcaagtggtatattgatggtcctagtggtgttggtattgatgctgagagcacaaagggtgcggttgctgaaactgaaacaacagatatggttggaattgcttctacttctgttttactggatccaaaatgctctaatagcaaaggtaggcacaagagtgagccaagaaaaaagaggctgatagatgtgattagaagcaagggtttggtgacatgtagtggttgtggatcccatgaccataacattcgcacttgtcccAaaaaaaagagaagccaaatgcaacagaagtga
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| Protein seq | MGSHMIPSFFELWELSVHSNAITLYRKKDGTEAESNEDYGMLFRLSQEGGITYTNLIQQVSVSPNANLAGAEVVLLQAPIESESALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQSVAVHPPVASLDMLYDEMQKSSADVDNQAEMCRPTVQLKASSVEVIYNEMQTQTIEADACFDQHFEQATEEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIFLENESVAIVQRGGQDANSAHVPSINKVFANENEAFDFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRWRKPSDPKEKDLHEVDEVENCLQTNTTNPLVKKRKQNKVVYTNCKAEMVITLKRGFWYITRLNLEHNHPLSPPEERKFLRSHKHMTDQEKLLIRTLNKINVPTRMIMSVLSYTEAEFEYLWKDFIRRNNLHNVRYFQLMWVTRKRWAPVYFKSNWCPLIQTTARSEGTNSRYKADICSSHSVSAFLAQYERIAETIYECFKEQESLTRNTVPDTWSEYQFEKQAAKLYTRKIFWAFQRILQSYTKYDVTVKVRDSIFEVYKSEIHALQDFRKRKYIVVVDTISEEYECICSRFKKDEKFIYVMNESDKIEDGLKAMSDTAPNEATVHVQDARRQLVLLLVLKWYIDGPSGVGIDAESTKGAVAETETTDMVGIASTSVLLDPKCSNSKGRHKSEPRKKRLIDVIRSKGLVTCSGCGSHDHNIRTCPKKKRSQMQQK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0852650 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0852650 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043280 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040620 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040990 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040450 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042270 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0639600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041900 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0612300 | SBH | 0.012 | 0 | 0.0042855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042430 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018570 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008500 | SBH | 0.0 | 0.0 | 0.0 |
