Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0042180 | OGI:01114860 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:40296470-40298806 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgaattccaccgaaaaccgcagcgaacgcacctacctaccacccaaacggcaagcggcagtgccaatggagcagcaacaggcggcgcccatggcgaggaacaggaaggtggtgctgcgcgagtacatcgccggccggccgccgagggaggacgacatggtgctcgtcgacggcggcacggtggccctgcgcgtgccggaggccgccgcccccgccccggcggtcctcgtgaagaatctctacctctcctgcgacccctacatgcgcggccggatgcgggacttccacggatcctacatcccgccgttcaagcccggatccgtaggtttcctcctccccttcgcctgctctccgttcaatcagaggtgcatttcaccctctacacggagaattgctttactggttattgaaggttccatttgtgtgaaggttattgaagggcttggagtggcgagagtggtggattccacccatccgggattcagcgcgggcgacattgtctccgggatgactggttgggaggaatacagtctgatcgacaggcctgaacagctgagcaagattcagcaaagtgacatacccctctcttaccatttggggcttcttggtgagttaattattataattctgattactagctaggatttgtattctgaaaaacagcacaaatcatgaatgagaacacaaggcgcatgataatttttcacaagaaaggcttgtgtgccatttgtgtggttccgggaaatatagtgtgttttactcttggtagttctagtgaattgacaatggtatgatgtaactagTttttggctatggaaaagtgaagtgcttctatttcatagttttcgtactgaatggaaaatatttagttacatactgatatatgaatctgctccccccgtttcctatcataagtcattttgactttttttttcttaattaaacttctttaggttagatcaagtttatagaaaaaatatagcaacatttctaaaaacaaacatgttatcaaaatgtattcaatgttatatctaatggaactaatttggtattgtagatgttgttaattttttctttaaactttgccaaacctaaagaagtttaactacgaaaaaaaatcaaaacaaattataatatgaaacggaggaattactgtttatggtactgctacttttgaactacttctttgatccgacggaggaaaaaaatcaaaacgacttattttcttgctttccttctcaggcatgcctggttttacagcttatgctggtttctatgagatctgctcaccgaagaagggcgagtttgtttttgtttcggctgcatcaggagcagttgggcaaattgtaggacaactcgcaaagcttcatggatgctatgttgtgggaagtgctggaacaaatcagaaagtattaacttaaaactgataattgcattcattacctgtatagatgcatcattcagggtttacagcaatgtttcaggttgagctcttgaagggcaagtttggatttgatgcagctttcaactataaagaggagcctgacttgactgcagccttgaaaaggtcaggccttctctttcagttaaaaggcacggcttaatttaggttcaatgagcaattgatgaattaagatagattataacgatcatctaaaaatcttaattaaaatactgcaatagtgtggaacatgctcctgttatagctaaattcgcgagtgaaaaaaagatggattcatacacttaatgtgttattgtttaaaaaatcgacctgctgaactcactgaatgattcataataccgttgtcatgatctaagtctgtttgtgatttgtccttgtgtaggtatttccctgaaggtattgacatctactttgagaacgtaggtggtccaatgcttgatgctgtactcctcaacatgaggacccatggtcgcattgccatatgcgggatggtctctcagaatgcgctgactgatcctgtagggatccacaacatcttctgccttgtaccaaagaggataagaatgcaggggttcatccagagcgaccacctccatatgttcccacagtttgtcagtgacatggcaaagcattacagagatggcaagattgtgtatgtagaagacatgagcatagggttggagaatgcaccggctgcgttggttggtctattcagtggaaaaaatgttggcaagaaggttgtgtgtgtgtcacaggagttaagtcagtgtacattctgatgagtatcagaaacctctctgaattgaggtgataagtaatagatgtttgtctgggaaaaaagttcaattcactcactcaataccagtgaaaatatt
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| CDS seq | atggagcagcaacaggcggcgcccatggcgaggaacaggaaggtggtgctgcgcgagtacatcgccggccggccgccgagggaggacgacatggtgctcgtcgacggcggcacggtggccctgcgcgtgccggaggccgccgcccccgccccggcggtcctcgtgaagaatctctacctctcctgcgacccctacatgcgcggccggatgcgggacttccacggatcctacatcccgccgttcaagcccggatccgttattgaagggcttggagtggcgagagtggtggattccacccatccgggattcagcgcgggcgacattgtctccgggatgactggttgggaggaatacagtctgatcgacaggcctgaacagctgagcaagattcagcaaagtgacatacccctctcttaccatttggggcttcttggcatgcctggttttacagcttatgctggtttctatgagatctgctcaccgaagaagggcgagtttgtttttgtttcggctgcatcaggagcagttgggcaaattgtaggacaactcgcaaagcttcatggatgctatgttgtgggaagtgctggaacaaatcagaaagttgagctcttgaagggcaagtttggatttgatgcagctttcaactataaagaggagcctgacttgactgcagccttgaaaaggtatttccctgaaggtattgacatctactttgagaacgtaggtggtccaatgcttgatgctgtactcctcaacatgaggacccatggtcgcattgccatatgcgggatggtctctcagaatgcgctgactgatcctgtagggatccacaacatcttctgccttgtaccaaagaggataagaatgcaggggttcatccagagcgaccacctccatatgttcccacagtttgtcagtgacatggcaaagcattacagagatggcaagattgtgtatgtagaagacatgagcatagggttggagaatgcaccggctgcgttggttggtctattcagtggaaaaaatgttggcaagaaggttgtgtgtgtgtcacaggagttaagtcagtgtacattctga
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| Protein seq | MEQQQAAPMARNRKVVLREYIAGRPPREDDMVLVDGGTVALRVPEAAAPAPAVLVKNLYLSCDPYMRGRMRDFHGSYIPPFKPGSVIEGLGVARVVDSTHPGFSAGDIVSGMTGWEEYSLIDRPEQLSKIQQSDIPLSYHLGLLGMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLAKLHGCYVVGSAGTNQKVELLKGKFGFDAAFNYKEEPDLTAALKRYFPEGIDIYFENVGGPMLDAVLLNMRTHGRIAICGMVSQNALTDPVGIHNIFCLVPKRIRMQGFIQSDHLHMFPQFVSDMAKHYRDGKIVYVEDMSIGLENAPAALVGLFSGKNVGKKVVCVSQELSQCTF |
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| Function | 2-alkenal reductase (NADP(+)-dependent) [UniProtKB/Swiss-Prot:Q9SLN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0042180 | OsLima_01g0042180.01 | Chr01 | 40296470 | 40298806 | + | NAM | ||
| CDS seq | atggagcagcaacaggcggcgcccatggcgaggaacaggaaggtggtgctgcgcgagtacatcgccggccggccgccgagggaggacgacatggtgctcgtcgacggcggcacggtggccctgcgcgtgccggaggccgccgcccccgccccggcggtcctcgtgaagaatctctacctctcctgcgacccctacatgcgcggccggatgcgggacttccacggatcctacatcccgccgttcaagcccggatccgttattgaagggcttggagtggcgagagtggtggattccacccatccgggattcagcgcgggcgacattgtctccgggatgactggttgggaggaatacagtctgatcgacaggcctgaacagctgagcaagattcagcaaagtgacatacccctctcttaccatttggggcttcttggcatgcctggttttacagcttatgctggtttctatgagatctgctcaccgaagaagggcgagtttgtttttgtttcggctgcatcaggagcagttgggcaaattgtaggacaactcgcaaagcttcatggatgctatgttgtgggaagtgctggaacaaatcagaaagttgagctcttgaagggcaagtttggatttgatgcagctttcaactataaagaggagcctgacttgactgcagccttgaaaaggtatttccctgaaggtattgacatctactttgagaacgtaggtggtccaatgcttgatgctgtactcctcaacatgaggacccatggtcgcattgccatatgcgggatggtctctcagaatgcgctgactgatcctgtagggatccacaacatcttctgccttgtaccaaagaggataagaatgcaggggttcatccagagcgaccacctccatatgttcccacagtttgtcagtgacatggcaaagcattacagagatggcaagattgtgtatgtagaagacatgagcatagggttggagaatgcaccggctgcgttggttggtctattcagtggaaaaaatgttggcaagaaggttgtgtgtgtgtcacaggagttaagtcagtgtacattctga
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| Protein seq | MEQQQAAPMARNRKVVLREYIAGRPPREDDMVLVDGGTVALRVPEAAAPAPAVLVKNLYLSCDPYMRGRMRDFHGSYIPPFKPGSVIEGLGVARVVDSTHPGFSAGDIVSGMTGWEEYSLIDRPEQLSKIQQSDIPLSYHLGLLGMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLAKLHGCYVVGSAGTNQKVELLKGKFGFDAAFNYKEEPDLTAALKRYFPEGIDIYFENVGGPMLDAVLLNMRTHGRIAICGMVSQNALTDPVGIHNIFCLVPKRIRMQGFIQSDHLHMFPQFVSDMAKHYRDGKIVYVEDMSIGLENAPAALVGLFSGKNVGKKVVCVSQELSQCTF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.195343 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0891300 | RBH | 0.0 | 0.0 | 2.532403 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66720 | RBH | 0.0 | 0.0 | 0.634884 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0891300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043210 | RBH | 0.0 | 4.030930 | 2.522527 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042800 | RBH | 0.049205 | 0.000000 | 0.768774 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043150 | RBH | 0.0 | 7.162929 | 3.169701 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042600 | RBH | 0.0 | 0.185347 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042200 | RBH | 0.0 | 5.403420 | 5.641905 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0638300 | SBH | 0 | 0.055903 | 0.017119 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041830 | RBH | 0.000000 | 0.455717 | 0.096135 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0638800 | RBH | 3.521081 | 1.9652275 | 6.754401 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042200 | SBH | 0.026820 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042120 | RBH | 0.146860 | 9.729593 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042400 | RBH | 0.000000 | 14.905930 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042330 | RBH | 0.0 | 0.666676 | 0.369202 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042190 | RBH | 0.000000 | 2.791198 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042600 | RBH | 0.249457 | 1.405788 | 1.545794 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042300 | RBH | 0.000000 | 8.201664 | 4.156037 |
