Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0041600 | OGI:01113750 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:39850321-39853083 | ||||||||
| Gene Symbol | RLCK50, OsRLCK50, OsSPARK5, SPARK5 | ||||||||||
| DNA seq | atggcgatcgccgcgccgcttttccggctcgccgccgccgccgccgtggtgatgggcgtggtgtcgccggcggtgaaggcggcggggggcgggaacagctcgacggcgtgcccgctcgacctcgggtacgtgcggtcgttcccgtgggacaccgcgccgtgcatgccgccggtggccaaccagaccgcctgctgcacgacgctgctctccgtgctcggcgtcggcctcgccgcgcgcctccgcgccacgggccacttccggctaccgtcggcgaacgcctcggccgcctgcctcggcgccttctccgacgagctcgcctcgccgccgctctcgctccaggacacgctcgttcccgcctgctggcccgtctcgtcccagctcgccatctcgccgtcctactgcgccggggtcaccaccgccaagcagtacgtcgccaccgttggcaacgccgcggttcttggcagcctcaactcctcctgtggctccgacctcgccgacctgtcgctctgctccagctgcctcgccgccgccatcgacgcctcaggtcgactcgtcgccgccgccgcaaagggaaccaatccgcagaactgcttctacctcaccgtcctttacgccgccggcgtctccagctctgccggcccgacctCccccggcaccgccaactgcgccctcggcctcgctctctccaccccttcgtcttcttcgtcgccggcgtccagttccaaccacaccaacatggcggtagccaccgccatcccggtcgcttccgcgctactcgtctccgtcatagcagcgctgcttgtatggaggaggaggcaggacagcatcaggagcaagagccgccgactctccggcgagcggcggttgtcgcgcccgcggccgaacgtcggctcggttctgttcagcctcggcgagctggcgaaggcgacctgcgggttcgccgagcggaacctcatcggccgcggcgggttcggcgtcgtgtaCcgcggcgtgctcgacgacgggtccgtggtcgcggtcaagaagatgctcgacccggacatggagggcggggacgaggagttcaccaacgaggtggagatcatcagccacctccggcaccggaacctcgtgccgctgcgcgggtgctgcatttccgacgacgacgccgacgagggcaagcagatgttcctcgtctacgactacatgccgaacggctcgctcgaccactacatcttcaaggacggcggcgatggcggacgccggccgccgccgctgtcgtgggcgcagcggcgcggcgtggtcctcgacgtggcgagggggctggagtacctgcaccacggcgtcaagccggggatctaccaccgcgacatcaaggcgaccaacatcctcctgggcaccgacatgcgcgcgcgcgtggcggacttcggcctggctcgccggagccgggaggggcagtcccacgtcacgacgcgcgtcgccggcacgcacggctacctctcgccggagtacgcgctgtacgggcagctcaccgagaagagcgacgtgtacagcttcggcgtgctggtgttggaggtgatgagcggccggcgcgcgctcgacctgtccgacccctccggcgtcgtgctgatcaccgactgggcgtgggcgctcgtcagggccgggcgcgcggcggaggtggtcgccgcggcgctgcgcgagcgggagggccccgccggggtgcacgccatggagaggttcgtgctcgtcgggatcctgtgcgcgcacgtcaccgtggcgtgccgccccaccatgccggaggcgctgaggatgctggagggcgacatggacgtgcccgaactgccggaacggccgcagccgtacggccagaggatcgcgttcgacgaaggcgaagccaatttcagcgcctcgtccgtgctgagcggcccgttcatggacttcggcgacatgctccggtgaggacaatggtatcaatcgttgatggatgcaacgagaaatatgttttgagtttggagacatccatggatctgcaattttacaggctgcaatgctgcagtttattgcagcatgtaaaattgcaacgaatgcagaccaactgatgttcagagttagtcaacaccaatagttgatgtaaatgacagtgtatcactgtctttgtgttggaatgctaatgatattatgcataatatatactgtactttaatttgtaagtggtagctaactgatgctcagagcctcagagtcatgtaactcagtaactgacagtatatcatgtgttgaaatgcaagtgaaacgacattagcatgaaaccaagcttgcataaattgtttgttacaatcacaaactactattcaccatctgacaaatgcggtgataacacaagcataccttgcagcttgcacgaagttactgatatctgaggtagctccattgctggtgctatctacagcgaggcagaatggcaagcacagagcttgtactagagacagactatatattggcacacaaagcaactcacatatgacatgctcaatagttcatcgaaacagacatgaaaacagggatacagttgacaatgcactaggacattcaatccagtggtggatcagtggatgagataactgatcgaagtggcggggcaacctagcagcttaattgttctcctgcaggttggggtggctgggctgcacgcggaaggtgatcggcatctgggccgcaaagtccctgtctggatggtacccaagctcaagatccctcatgctcccgctcagcgctatatcttgc
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| CDS seq | atggcgatcgccgcgccgcttttccggctcgccgccgccgccgccgtggtgatgggcgtggtgtcgccggcggtgaaggcggcggggggcgggaacagctcgacggcgtgcccgctcgacctcgggtacgtgcggtcgttcccgtgggacaccgcgccgtgcatgccgccggtggccaaccagaccgcctgctgcacgacgctgctctccgtgctcggcgtcggcctcgccgcgcgcctccgcgccacgggccacttccggctaccgtcggcgaacgcctcggccgcctgcctcggcgccttctccgacgagctcgcctcgccgccgctctcgctccaggacacgctcgttcccgcctgctggcccgtctcgtcccagctcgccatctcgccgtcctactgcgccggggtcaccaccgccaagcagtacgtcgccaccgttggcaacgccgcggttcttggcagcctcaactcctcctgtggctccgacctcgccgacctgtcgctctgctccagctgcctcgccgccgccatcgacgcctcaggtcgactcgtcgccgccgccgcaaagggaaccaatccgcagaactgcttctacctcaccgtcctttacgccgccggcgtctccagctctgccggcccgacctCccccggcaccgccaactgcgccctcggcctcgctctctccaccccttcgtcttcttcgtcgccggcgtccagttccaaccacaccaacatggcggtagccaccgccatcccggtcgcttccgcgctactcgtctccgtcatagcagcgctgcttgtatggaggaggaggcaggacagcatcaggagcaagagccgccgactctccggcgagcggcggttgtcgcgcccgcggccgaacgtcggctcggttctgttcagcctcggcgagctggcgaaggcgacctgcgggttcgccgagcggaacctcatcggccgcggcgggttcggcgtcgtgtaCcgcggcgtgctcgacgacgggtccgtggtcgcggtcaagaagatgctcgacccggacatggagggcggggacgaggagttcaccaacgaggtggagatcatcagccacctccggcaccggaacctcgtgccgctgcgcgggtgctgcatttccgacgacgacgccgacgagggcaagcagatgttcctcgtctacgactacatgccgaacggctcgctcgaccactacatcttcaaggacggcggcgatggcggacgccggccgccgccgctgtcgtgggcgcagcggcgcggcgtggtcctcgacgtggcgagggggctggagtacctgcaccacggcgtcaagccggggatctaccaccgcgacatcaaggcgaccaacatcctcctgggcaccgacatgcgcgcgcgcgtggcggacttcggcctggctcgccggagccgggaggggcagtcccacgtcacgacgcgcgtcgccggcacgcacggctacctctcgccggagtacgcgctgtacgggcagctcaccgagaagagcgacgtgtacagcttcggcgtgctggtgttggaggtgatgagcggccggcgcgcgctcgacctgtccgacccctccggcgtcgtgctgatcaccgactgggcgtgggcgctcgtcagggccgggcgcgcggcggaggtggtcgccgcggcgctgcgcgagcgggagggccccgccggggtgcacgccatggagaggttcgtgctcgtcgggatcctgtgcgcgcacgtcaccgtggcgtgccgccccaccatgccggaggcgctgaggatgctggagggcgacatggacgtgcccgaactgccggaacggccgcagccgtacggccagaggatcgcgttcgacgaaggcgaagccaatttcagcgcctcgtccgtgctgagcggcccgttcatggacttcggcgacatgctccggtga
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| Protein seq | MAIAAPLFRLAAAAAVVMGVVSPAVKAAGGGNSSTACPLDLGYVRSFPWDTAPCMPPVANQTACCTTLLSVLGVGLAARLRATGHFRLPSANASAACLGAFSDELASPPLSLQDTLVPACWPVSSQLAISPSYCAGVTTAKQYVATVGNAAVLGSLNSSCGSDLADLSLCSSCLAAAIDASGRLVAAAAKGTNPQNCFYLTVLYAAGVSSSAGPTSPGTANCALGLALSTPSSSSSPASSSNHTNMAVATAIPVASALLVSVIAALLVWRRRQDSIRSKSRRLSGERRLSRPRPNVGSVLFSLGELAKATCGFAERNLIGRGGFGVVYRGVLDDGSVVAVKKMLDPDMEGGDEEFTNEVEIISHLRHRNLVPLRGCCISDDDADEGKQMFLVYDYMPNGSLDHYIFKDGGDGGRRPPPLSWAQRRGVVLDVARGLEYLHHGVKPGIYHRDIKATNILLGTDMRARVADFGLARRSREGQSHVTTRVAGTHGYLSPEYALYGQLTEKSDVYSFGVLVLEVMSGRRALDLSDPSGVVLITDWAWALVRAGRAAEVVAAALREREGPAGVHAMERFVLVGILCAHVTVACRPTMPEALRMLEGDMDVPELPERPQPYGQRIAFDEGEANFSASSVLSGPFMDFGDMLR |
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| Function | Probable receptor-like protein kinase At1g11050 [UniProtKB/Swiss-Prot:O04086] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0041600 | OsLima_01g0041600.01 | Chr01 | 39850321 | 39853083 | + | NAM | ||
| CDS seq | atggcgatcgccgcgccgcttttccggctcgccgccgccgccgccgtggtgatgggcgtggtgtcgccggcggtgaaggcggcggggggcgggaacagctcgacggcgtgcccgctcgacctcgggtacgtgcggtcgttcccgtgggacaccgcgccgtgcatgccgccggtggccaaccagaccgcctgctgcacgacgctgctctccgtgctcggcgtcggcctcgccgcgcgcctccgcgccacgggccacttccggctaccgtcggcgaacgcctcggccgcctgcctcggcgccttctccgacgagctcgcctcgccgccgctctcgctccaggacacgctcgttcccgcctgctggcccgtctcgtcccagctcgccatctcgccgtcctactgcgccggggtcaccaccgccaagcagtacgtcgccaccgttggcaacgccgcggttcttggcagcctcaactcctcctgtggctccgacctcgccgacctgtcgctctgctccagctgcctcgccgccgccatcgacgcctcaggtcgactcgtcgccgccgccgcaaagggaaccaatccgcagaactgcttctacctcaccgtcctttacgccgccggcgtctccagctctgccggcccgacctCccccggcaccgccaactgcgccctcggcctcgctctctccaccccttcgtcttcttcgtcgccggcgtccagttccaaccacaccaacatggcggtagccaccgccatcccggtcgcttccgcgctactcgtctccgtcatagcagcgctgcttgtatggaggaggaggcaggacagcatcaggagcaagagccgccgactctccggcgagcggcggttgtcgcgcccgcggccgaacgtcggctcggttctgttcagcctcggcgagctggcgaaggcgacctgcgggttcgccgagcggaacctcatcggccgcggcgggttcggcgtcgtgtaCcgcggcgtgctcgacgacgggtccgtggtcgcggtcaagaagatgctcgacccggacatggagggcggggacgaggagttcaccaacgaggtggagatcatcagccacctccggcaccggaacctcgtgccgctgcgcgggtgctgcatttccgacgacgacgccgacgagggcaagcagatgttcctcgtctacgactacatgccgaacggctcgctcgaccactacatcttcaaggacggcggcgatggcggacgccggccgccgccgctgtcgtgggcgcagcggcgcggcgtggtcctcgacgtggcgagggggctggagtacctgcaccacggcgtcaagccggggatctaccaccgcgacatcaaggcgaccaacatcctcctgggcaccgacatgcgcgcgcgcgtggcggacttcggcctggctcgccggagccgggaggggcagtcccacgtcacgacgcgcgtcgccggcacgcacggctacctctcgccggagtacgcgctgtacgggcagctcaccgagaagagcgacgtgtacagcttcggcgtgctggtgttggaggtgatgagcggccggcgcgcgctcgacctgtccgacccctccggcgtcgtgctgatcaccgactgggcgtgggcgctcgtcagggccgggcgcgcggcggaggtggtcgccgcggcgctgcgcgagcgggagggccccgccggggtgcacgccatggagaggttcgtgctcgtcgggatcctgtgcgcgcacgtcaccgtggcgtgccgccccaccatgccggaggcgctgaggatgctggagggcgacatggacgtgcccgaactgccggaacggccgcagccgtacggccagaggatcgcgttcgacgaaggcgaagccaatttcagcgcctcgtccgtgctgagcggcccgttcatggacttcggcgacatgctccggtga
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| Protein seq | MAIAAPLFRLAAAAAVVMGVVSPAVKAAGGGNSSTACPLDLGYVRSFPWDTAPCMPPVANQTACCTTLLSVLGVGLAARLRATGHFRLPSANASAACLGAFSDELASPPLSLQDTLVPACWPVSSQLAISPSYCAGVTTAKQYVATVGNAAVLGSLNSSCGSDLADLSLCSSCLAAAIDASGRLVAAAAKGTNPQNCFYLTVLYAAGVSSSAGPTSPGTANCALGLALSTPSSSSSPASSSNHTNMAVATAIPVASALLVSVIAALLVWRRRQDSIRSKSRRLSGERRLSRPRPNVGSVLFSLGELAKATCGFAERNLIGRGGFGVVYRGVLDDGSVVAVKKMLDPDMEGGDEEFTNEVEIISHLRHRNLVPLRGCCISDDDADEGKQMFLVYDYMPNGSLDHYIFKDGGDGGRRPPPLSWAQRRGVVLDVARGLEYLHHGVKPGIYHRDIKATNILLGTDMRARVADFGLARRSREGQSHVTTRVAGTHGYLSPEYALYGQLTEKSDVYSFGVLVLEVMSGRRALDLSDPSGVVLITDWAWALVRAGRAAEVVAAALREREGPAGVHAMERFVLVGILCAHVTVACRPTMPEALRMLEGDMDVPELPERPQPYGQRIAFDEGEANFSASSVLSGPFMDFGDMLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0883000 | RBH | 0.264360 | 0.133184 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66020 | RBH | 0.232931 | 0.086759 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0883000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042650 | RBH | 0.067511 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042210 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0042550 | RBH | 1.042671 | 0.0 | 0.235288 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041590 | RBH | 0.372011 | 0.000000 | 0.803665 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0631500 | RBH | 1.1134395 | 0.47697 | 4.1240235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041230 | RBH | 0.133580 | 0.000000 | 0.090340 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0631800 | RBH | 0.859203 | 0.046723 | 1.0478845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017630 | RBH | 0.091642 | 0.020473 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0041530 | RBH | 0.464357 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041790 | RBH | 4.835137 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041740 | RBH | 0.000000 | 0.0 | 0.124978 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041610 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042010 | RBH | 0.083204 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0041700 | RBH | 0.168507 | 0.000000 | 0.887580 |
