Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0041000 | OGI:01112430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:39429139-39433352 | ||||||||
| Gene Symbol | DNK2, OsdNK2, dNK2 | ||||||||||
| DNA seq | aagcaacatcacaactgcaccacattggcactcatgaagctaccaccaacacaacagaagcagccaaataatcatttacagggacgccttttattgacgacgaagaagagtgaacatttacatggacgagtttgatactactattgtacagcattggctagcgctatacagaaacctatatttcaataaatcttcagcatttacagggtcgtcagttcaaggctatctgagacgcagatatgacgatggaccattcagaatttgtaatactggaacatatggtggccaggaattggctatttcatatgggatgttggCccctaagctgagaggaaggaagacattgctcttctgaaatccagagagttcagagcagatcctggtaaagggttaccttcgggaacccacaaaccacctctgtggggaagcataatctgtttgttggtactcttatcaccaccacttgactccgcagaaggatcttctttctttttctttacaaattcaaagaactccgcaacttgtcgggcatatcttcatggacaagatggaaatatcagacacagaaaatttgaactcaagggcaccacaggatgttcagctgaagctatagaaaagatccaaaagtatgtagcattctctaaagaaaatgggcatcgcaaaaatgcgggaatgaatagcataaatacataaactccatcataaggttcggcagaaaaataatactacaacagatgaaacagagcgtattggataccaaatcaggccgggaaatgcatggataccaaaactagggccacataaagtcaaggaacaatagtcacatactaaattagagatatagcaacagcacataaacgtttgttgattttgcaaaatattttctgttttaagtaccaaagctgaaccaaactctcccctagatatccaaaaaatgaacccatgggcatactgaattatctcatcaagctaccgcaattagcatcagttccaatgttcttacaataaattggtcaggttgtagtgctatagtggaaagagaccttaggagcagtttaataacattttaagtacaagactcttcatataaatgaactataatgaaaagtgcaaaaacaaaataattgagttcctaatatgtcataaaccatgtcatatacggatatgttgctagcagttgagttggtactaaacattcgatgtaaggaatttaagcaagaagtgtcatgcaactaaactagcagaaagaaacttcataccaagtactacaaaatacatgtatgccatacacaaaggaagaatgatgcatgagctataggataatagttgtactctgatccctcttaacttgaagccacatacaagaaaagcatttcttttttgtgctcctatagtctttctagcatttcaacagttgtaaagttgaactttgaaatcttgaccactatgaataaagatcaaggtagacctaccgtgtgactagaacgcagccactatacgaacagggttgagttcaattttggaataaatataatgtttgtgtttgttaagaagaatgaactagtaaataaatacaggctagcactagatgttcttagatgttcttttcttatgaaataaatacaggctagcactagaaGaaaataatataaggttgacaattgtcctatggacaaaataaaggttttgcaaaacttactgtcgtttggcttcaatatccttgttaaaatcaatgtcatgttcgcagtcgaggaccagagcaggaacctgattgagaagaaatttcgttcatttaaccaaacaaaccttactaatatcTtttgaaactaaggagaacattaccttctggatactagaatgcatatgatctccttctaagtagaatactcgttctcttatatccggaggcaaagagccctccatatggactggaacttgactgaccgataatacaccagaaccttgtcctttggaaggaagcagccagctctcatgtttctcatgcaaacctcgaaggtaatcaagagtaacaccaccctcttcagatcttttccgaaccatcattcttttgtggcaagtgtcgggactagctcttagataaataaaaccatctggaataagtcctGggagtgatgacaccactgggtcaaaccaggagtcatagatgctgatctccatctcgttcatccagttggcttcatggacagcacgaacaaaaaccttcaaaaatttaactttgaaaattttaactaggagaagaaaataacaatgggaaatataaagactgcaatcgtatcaaagctctagattcacaatccaagcggactttgacggaaagatttacctaccattctatcactgaaaacacttctttccatcaacctgagaggctttatgccacttgaagattccttctcttgcatgacccttgtaacaaacacataattctggaaagtgtatgcatacctctgtggctcagcatagaaagcatcaagtatgttgaagtgatcagggccaacatcttgccatttagcaataggttcaggcactatctctacaaggtcacgtaattcgatggtctcattggcaattctttgaaggaatgtagtttttccgacactgatgttcccttccacacaaaaggtcagcctcttatttttggaaacatttggtgagtcagttcctttcagctcttcatcaacactttctttaatgaacaaagttatactctcagcatgattcttgtgtatgatgccaacagaactttgcaagaactcaaccattttctcattggacttgccaaagaactgcaaaaactcatgaagtgtcagtgtcaggtatgcggaaattaggataaataaagagggaaaaagacatctaatattcgtgcagtaaggtcgccacaatgaaataaatatcacaaatcaggcctggaggagaacccacaattgtactctgttcttttcctgacactaaggtttttcttttcaggatcttagttgtgttacaacaagaaaattaactttcacccaaaacagtttcaacacaaaatttgacatatatgttgaacacgggcatcaatttcaccaattcttctgtcatctctcctaacgagcacaagaatgcaagatctcctatgatgcagaattggacatcagcatggatcaataattcaccaatgaccacgaaacacacagttgcttgcaagcgcaacacaacacctacagtatccttatgtgtcagtcgactcacttacatacaggtatgtgagtgtaggcaaaggcatgcaaagtacttgacttaagtgactacaactaagcatatataTttctcacatgttcaataaacaacaacaaaacagatatagtactactccctccaggttgataatatttattgttttgaacaagaatgatgttatgattttggatatgaatcatttctaaaatatttgtcagaccatatgcacagattagttttaaaaagtactctaataaaagtatatatttgttgatactatatatattataatagaaaataaaggttatgattgtttcctagagaccgtgctcttgttgaaaacgataagtattatcgatctgaaggagtacaagctaatatttcacagttCAcacacacacacacaccttatccctgtacagctgcttgagctgtgccacgccatcgaatcccttgtccacgagcttcctcaggttgcgcggcccgactccaggaatcgcgagcagctcgccgctccccatcgccgcatcgccccgacttctctgcctcctatccaccaccggacggctcccacctcccccggcgacgctctgctcgccatcctcctcggcatcatcatccccgcacctcttcgccgcatcggcggagcaggagagccccctcctcgagcgcagcagccgccacggggagaggcggaggcggaggcggctagggtttggtgggcccgaacgcgcggcgagaagcgggcccgcctgggtggtgagcagcggcggggcgccgaggaaggaggcggcggcgcggggtacgagcctgtgcatcgctgcccgcggcgtcggctgcagggctcatcaatcgcgcctccagcacccccagtaggccgccggccaacgtggctgcggcggcggcggaattgcggctgcggtggttggaggggttcagggttttgctggcgctatcacctcgctgacttcact
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| CDS seq | atgcacaggctcgtaccccgcgccgccgcctccttcctcggcgccccgccgctgctcaccacccaggcgggcccgcttctcgccgcgcgttcgggcccaccaaaccctagccgcctccgcctccgcctctccccgtggcggctgctgcgctcgaggagggggctctcctgctccgccgatgcggcgaagaggtgcggggatgatgatgccgaggaggatggcgagcagagcgtcgccgggggaggtgggagccgtccggtggtggataggaggcagagaagtcggggcgatgcggcgatggggagcggcgagctgctcgcgattcctggagtcgggccgcgcaacctgaggaagctcgtggacaagggattcgatggcttctttggcaagtccaatgagaaaatggttgagttcttgcaaagttctgttggcatcatacacaagaatcatgctgagagtataactttgttcattaaagaaagtgttgatgaagagctgaaaggaactgactcaccaaatgtttccaaaaataagaggctgaccttttgtgtggaagggaacatcagtgtcggaaaaactacattccttcaaagaattgccaatgagaccatcgaattacgtgaccttgtagagatagtgcctgaacctattgctaaatggcaagatgttggccctgatcacttcaacatacttgatgctttctatgctgagccacagaggtatgcatacactttccagaattatgtgtttgttacaagggtcatgcaagagaaggaatcttcaagtggcataaagcctctcaggttgatggaaagaagtgttttcagtgatagaatggtttttgttcgtgctgtccatgaagccaactggatgaacgagatggagatcagcatctatgactcctggtttgacccagtggtgtcatcactccCaggacttattccagatggttttatttatctaagagctagtcccgacacttgccacaaaagaatgatggttcggaaaagatctgaagagggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgcttccttccaaaggacaaggttctggtgtattatcggtcagtcaagttccagtccatatggagggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcattctagtatccagaaggttcctgctctggtcctcgactgcgaacatgacattgattttaacaaggatattgaagccaaacgacaatatgcccgacaagttgcggagttctttgaatttgtaaagaaaaagaaagaagatccttctgcggagtcaagtggtggtgataagagtaccaacaaacagattatgcttccccacagaggtggtttgtgggttcccgaaggtaaccctttaccaggatctgctctgaactctctggatttcagaagagcaatgtcttccttcctctcagcttag
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| Protein seq | MHRLVPRAAASFLGAPPLLTTQAGPLLAARSGPPNPSRLRLRLSPWRLLRSRRGLSCSADAAKRCGDDDAEEDGEQSVAGGGGSRPVVDRRQRSRGDAAMGSGELLAIPGVGPRNLRKLVDKGFDGFFGKSNEKMVEFLQSSVGIIHKNHAESITLFIKESVDEELKGTDSPNVSKNKRLTFCVEGNISVGKTTFLQRIANETIELRDLVEIVPEPIAKWQDVGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQEKESSSGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMVRKRSEEGGVTLDYLRGLHEKHESWLLPSKGQGSGVLSVSQVPVHMEGSLPPDIRERVFYLEGDHMHSSIQKVPALVLDCEHDIDFNKDIEAKRQYARQVAEFFEFVKKKKEDPSAESSGGDKSTNKQIMLPHRGGLWVPEGNPLPGSALNSLDFRRAMSSFLSA |
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| Function | Deoxycytidine kinase [UniProtKB/Swiss-Prot:P27707] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0041000 | OsLima_01g0041000.01 | Chr01 | 39429195 | 39433196 | - | NAM | ||
| CDS seq | atgcacaggctcgtaccccgcgccgccgcctccttcctcggcgccccgccgctgctcaccacccaggcgggcccgcttctcgccgcgcgttcgggcccaccaaaccctagccgcctccgcctccgcctctccccgtggcggctgctgcgctcgaggagggggctctcctgctccgccgatgcggcgaagaggtgcggggatgatgatgccgaggaggatggcgagcagagcgtcgccgggggaggtgggagccgtccggtggtggataggaggcagagaagtcggggcgatgcggcgatggggagcggcgagctgctcgcgattcctggagtcgggccgcgcaacctgaggaagctcgtggacaagggattcgatggcttctttggcaagtccaatgagaaaatggttgagttcttgcaaagttctgttggcatcatacacaagaatcatgctgagagtataactttgttcattaaagaaagtgttgatgaagagctgaaaggaactgactcaccaaatgtttccaaaaataagaggctgaccttttgtgtggaagggaacatcagtgtcggaaaaactacattccttcaaagaattgccaatgagaccatcgaattacgtgaccttgtagagatagtgcctgaacctattgctaaatggcaagatgttggccctgatcacttcaacatacttgatgctttctatgctgagccacagaggtatgcatacactttccagaattatgtgtttgttacaagggtcatgcaagagaaggaatcttcaagtggcataaagcctctcaggttgatggaaagaagtgttttcagtgatagaatggtttttgttcgtgctgtccatgaagccaactggatgaacgagatggagatcagcatctatgactcctggtttgacccagtggtgtcatcactccCaggacttattccagatggttttatttatctaagagctagtcccgacacttgccacaaaagaatgatggttcggaaaagatctgaagagggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgcttccttccaaaggacaaggttctggtgtattatcggtcagtcaagttccagtccatatggagggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcattctagtatccagaaggttcctgctctggtcctcgactgcgaacatgacattgattttaacaaggatattgaagccaaacgacaatatgcccgacaagttgcggagttctttgaatttgtaaagaaaaagaaagaagatccttctgcggagtcaagtggtggtgataagagtaccaacaaacagattatgcttccccacagaggtggtttgtgggttcccgaaggtaaccctttaccaggatctgctctgaactctctggatttcagaagagcaatgtcttccttcctctcagcttag
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| Protein seq | MHRLVPRAAASFLGAPPLLTTQAGPLLAARSGPPNPSRLRLRLSPWRLLRSRRGLSCSADAAKRCGDDDAEEDGEQSVAGGGGSRPVVDRRQRSRGDAAMGSGELLAIPGVGPRNLRKLVDKGFDGFFGKSNEKMVEFLQSSVGIIHKNHAESITLFIKESVDEELKGTDSPNVSKNKRLTFCVEGNISVGKTTFLQRIANETIELRDLVEIVPEPIAKWQDVGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQEKESSSGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMVRKRSEEGGVTLDYLRGLHEKHESWLLPSKGQGSGVLSVSQVPVHMEGSLPPDIRERVFYLEGDHMHSSIQKVPALVLDCEHDIDFNKDIEAKRQYARQVAEFFEFVKKKKEDPSAESSGGDKSTNKQIMLPHRGGLWVPEGNPLPGSALNSLDFRRAMSSFLSA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0041000 | OsLima_01g0041000.02 | Chr01 | 39429139 | 39433352 | - | IsoSeq | ||
| CDS seq | atgcggcgaagaggtgcggggatgatgatgccgaggaggatggcgagcagagcgtcgccgggggaggtgggagccgtccggtggtggataggaggcagagaagtcggggcgatgcggcgatggggagcggcgagctgctcgcgattcctggagtcgggccgcgca |
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| Protein seq | MRRRGAGMMMPRRMASRASPGEVGAVRWWIGGREVGAMRRWGAASCSRFLESGRA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 39431945 | 39432819 | - | OsLima_01g0041000.02 | OsLima_01g0041000.01,OsLima_01g0041000.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.623440 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0874100 | RBH | 3.629708 | 2.462270 | 3.903144 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g65350 | RBH | 2.514379 | 1.654152 | 1.092289 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0874100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042040 | RBH | 1.525731 | 2.601577 | 3.146908 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041620 | RBH | 0.210543 | 0.909299 | 2.229686 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041960 | RBH | 3.604609 | 2.479914 | 6.071934 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0041430 | RBH | 0.341887 | 0.030452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041000 | RBH | 13.292430 | 8.557687 | 10.214021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0623200 | RBH | 9.635402 | 10.1057235 | 2.437844 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040640 | RBH | 0.724864 | 0.082045 | 0.833004 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0623900 | RBH | 6.8488635 | 10.370019 | 7.773928 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018020 | RBH | 0.194462 | 0.120324 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040950 | RBH | 1.573217 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041180 | RBH | 5.324318 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041150 | RBH | 2.454978 | 0.508726 | 1.510087 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041010 | RBH | 0.706997 | 0.530456 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G041430 | RBH | 0.836718 | 0.0 | 2.776601 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0041090 | RBH | 2.995562 | 6.131077 | 8.344761 |
